Nocardioides panzhihuensis (DSM 26487, KCTC 19888, NBRC 108680)

Name: Nocardioides panzhihuensis (DSM 26487, KCTC 19888, NBRC 108680)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11156

Type strain

Culture col. no. DSM 26487 KCTC 19888 NBRC 108680 KLBMP 1050

NCBI tax ID(s) 860243

Special Collections DSMZ KCTC

History DSMZ <- KCTC; KCTC 19888

Links

Nocardioides panzhihuensis DSM 26487 is a bacterium that was isolated from stem of the oil-seed plant Jatropha curcas L..

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 399974

KCTC 19888,NBRC 108680,DSM 26487

@ref 20215

Last LPSN update 2026-05-29 08:27:30

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Nocardioidaceae

Genus Nocardioides

Species Nocardioides panzhihuensis

Full scientific name Nocardioides panzhihuensis corrig. Qin et al. 2012

Synonyms (1)

Nocardioides panzhihuaensis

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	90.411
125439	positive	98.796

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
18247	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
18247	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.739

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Stem (Branch)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
18247	stem of the oil-seed plant Jatropha curcas L.	Jatropha curcas	Sichuan Province	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence HM153774 (>99% sequence identity) for Nocardioides from Microbeatlas

Aquatic Samples	920
Soil Samples	9755
Animal Samples	2174
Plant Samples	2869
Total Samples	15718

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18247	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1340833v1 assembly for Nocardioides panzhihuensis DSM 26487	contig	GCA_013408335	860243.3	2833997711	860243	74.37

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
18247	Nocardioides panzhihuensis strain KLBMP 1050 16S ribosomal RNA gene, partial sequence	HM153774	1449		860243

GC content

18247

GC-content (mol%)70.1

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1340833v1 assembly for Nocardioides panzhihuensis DSM 26487
BV-BRC: 860243.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.74	no
125439	gram_stain	BacteriaNetⓘ	positive	98.80	no
125439	spore_formation	BacteriaNetⓘ	no	66.08	no
125439	motility	BacteriaNetⓘ	no	87.64	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nocardioides panzhihuensis strain DSM 26487
PATRIC: 860243.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.41	no
125438	anaerobic	anaerobicⓘ	no	97.84	no
125438	aerobic	aerobicⓘ	yes	89.65	no
125438	spore-forming	spore-formingⓘ	yes	62.92	no
125438	thermophilic	thermophileⓘ	no	98.11	yes
125438	flagellated	motile2+ⓘ	no	89.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	The Roman Houses of the Caelian Hill (Rome, Italy): Multitemporal Evaluation of Biodeterioration Patterns.	Isola D, Bartoli F, Morretta S, Caneva G.	Microorganisms	10.3390/microorganisms11071770	2023
Genetics	Polyphasic characterization and genomic insights into Nocardioides turkmenicus sp. nov. isolated from a desert soil.	Saygin H, Guven K, Cetin D, Sahin N.	Antonie Van Leeuwenhoek	10.1007/s10482-023-01920-2	2024
Phylogeny	Nocardioides panzhihuaensis sp. nov., a novel endophytic actinomycete isolated from medicinal plant Jatropha curcas L.	Qin S, Yuan B, Zhang YJ, Bian GK, Tamura T, Sun BZ, Li WJ, Jiang JH	Antonie Van Leeuwenhoek	10.1007/s10482-012-9745-8	2012

References

#18247	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26487
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nocardioides panzhihuensis (DSM 26487, KCTC 19888, NBRC 108680)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_013408335

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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