Name: Nocardioides mesophilus MSL-22
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11149

Type strain:

Species: Nocardioides mesophilus

Strain Designation: MSL-22

Culture col. no.: DSM 19432, KCTC 19310, MSL 22, NBRC 107606

Strain history: <- CJ Kim, KRIBB

NCBI tax ID(s): 433659 (species)

SI-ID 370984

DSM 19432, KCTC 19310

Section

Nocardioides mesophilus MSL-22 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from soil.

Gram-positive
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Nocardioides*
	Species	**Nocardioides mesophilus**
	Full Scientific Name (LPSN)	Nocardioides mesophilus Dastager et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29703]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #29703]	Cell length	0.9-1.4 µm

[Ref.: #29703]	Cell width	0.3-0.8 µm

[Ref.: #29703]	Cell shape	rod-shaped

[Ref.: #29703]	Motility	yes

[Ref.: #29703]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8012]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #8012]

Culture medium growth

[Ref.: #8012]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8012]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8012]	growth	28 °C
[Ref.: #29703]	growth	20-37 °C
[Ref.: #29703]	optimum	28 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #8012]	Temperature range	mesophilic
[Ref.: #29703]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29703]			optimum	7-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29703]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #29703]

Ability of spore formation

[Ref.: #29703]

Observation

aggregates in chains

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29703]		mannitol ChEBI	+	carbon source
[Ref.: #29703]		raffinose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #29703]	acid phosphatase	+	3.1.3.2
[Ref.: #29703]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29703]	catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8012]	Sample type/isolated from	soil
[Ref.: #8012]	Geographic location (country and/or sea, region)	Bigeum Island, Jeollanam-do Province
[Ref.: #8012]	Country	Republic of Korea
[Ref.: #8012]	Country ISO 3 Code	KOR
[Ref.: #8012]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From farming field
[Ref.: #67771]	Geographic location (country and/or sea, region)	Bikeum island
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8012]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8012]	Nocardioides mesophilus strain MSL 22 16S ribosomal RNA gene, partial sequence	EF466117	1403	ENA	433659 tax ID

[Ref.: #8012]	GC-content	68.7 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29703]	GC-content	68.7 mol%

Availability in culture collections External links

[Ref.: #8012]

Culture collection no.

DSM 19432, KCTC 19310, MSL 22, NBRC 107606

[Ref.: #80398]

SI-ID 370984

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides daejeonensis sp. nov., a denitrifying bacterium isolated from sludge in a sewage-disposal plant.	Woo SG, Srinivasan S, Yang J, Jung YA, Kim MK, Lee M	Int J Syst Evol Microbiol	10.1099/ijs.0.033308-0	2011	*
Phylogeny	Nocardioides iriomotensis sp. nov., an actinobacterium isolated from forest soil.	Yamamura H, Ohkubo SY, Nakagawa Y, Ishida Y, Hamada M, Otoguro M, Tamura T, Hayakawa M	Int J Syst Evol Microbiol	10.1099/ijs.0.025080-0	2010	*
Phylogeny	Nocardioides mesophilus sp. nov., isolated from soil.	Dastager SG, Lee JC, Pandey A, Kim CJ	Int J Syst Evol Microbiol	10.1099/ijs.0.019059-0	2009	*

References

#8012

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19432

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29703

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26086 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#80398

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID370984.1 )

#26086

IJSEM 2288 2010 ( DOI 10.1099/ijs.0.019059-0 , PubMed 19915109 )

* These data were automatically processed and therefore are not curated

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