Nocardioides halotolerans (DSM 19273, KCTC 19274, MSL-23)

Name: Nocardioides halotolerans (DSM 19273, KCTC 19274, MSL-23)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11138

Type strain

Strain Designation MSL-23

Culture col. no. DSM 19273 KCTC 19274 MSL-23 MSL 23

NCBI tax ID(s) 1122609 433660

Special Collections DSMZ KCTC

History <- Chang-Jin Kim; MSL-23 <- CJ Kim, KRIBB

Links

Nocardioides halotolerans MSL-23 is an aerobe, Gram-positive bacterium that was isolated from soil, farming field.

Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400980

KCTC 19274,DSM 19273

@ref 20215

Last LPSN update 2026-02-09 11:20:27

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Nocardioidaceae

Genus Nocardioides

Species Nocardioides halotolerans

Full scientific name Nocardioides halotolerans Dastager et al. 2009

Morphology

Cell morphology

@ref	Confidence	Gram stain
67771		positive
125438	92.1
125439	99.8	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7991	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
7991	positive	growth	28
67771	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67771	aerobe
125439	obligate aerobe	99.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7991	soil, farming field	Bikeum Island	Republic of Korea	KOR	Asia
67771	From farming field	Bikeum island	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence EF466122 (>99% sequence identity) for Nocardioides from Microbeatlas

Aquatic Samples	209
Soil Samples	1598
Animal Samples	473
Plant Samples	30
Total Samples	2310

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7991	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM42280v1 assembly for Nocardioides halotolerans DSM 19273	scaffold	GCA_000422805	1122609.3	2523533541	1122609	72.32

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7991	Nocardioides halotolerans strain MSL-23 16S ribosomal RNA gene, partial sequence	EF466122	1407		1122609

GC content

7991

GC-content (mol%)69.7

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Nocardioides halotolerans DSM 19273
NCBI: GCA_000422805

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	72.70	no
125439	motility	BacteriaNetⓘ	no	79.30	no
125439	gram_stain	BacteriaNetⓘ	positive	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nocardioides halotolerans DSM 19273 DSM 19273
NCBI: GCA_000422805.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.77	no
125438	anaerobic	anaerobicⓘ	no	97.81	yes
125438	aerobic	aerobicⓘ	yes	89.56	yes
125438	spore-forming	spore-formingⓘ	no	57.22	no
125438	thermophilic	thermophileⓘ	no	96.61	yes
125438	flagellated	motile2+ⓘ	no	92.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	High-throughput sequencing reveals the structure and metabolic resilience of desert microbiome confronting climate change.	Mousa WK, Abu-Izneid T, Salah-Tantawy A.	Front Plant Sci	10.3389/fpls.2024.1294173	2024
	Microbial community structure analysis in Acer palmatum bark and isolation of novel bacteria IAD-21 of the candidate division FBP.	Kobayashi K, Aoyagi H.	PeerJ	10.7717/peerj.7876	2019
	Composition and biodiversity of soil and root-associated microbiome in Vitis vinifera cultivar Lambrusco distinguish the microbial terroir of the Lambrusco DOC protected designation of origin area on a local scale.	Nanetti E, Palladino G, Scicchitano D, Trapella G, Cinti N, Fabbrini M, Cozzi A, Accetta G, Tassini C, Iannaccone L, Candela M, Rampelli S.	Front Microbiol	10.3389/fmicb.2023.1108036	2023
	The structure and diversity of microbial communities in Paederus fuscipes (Coleoptera: Staphylinidae): from ecological paradigm to pathobiome.	Chamankar B, Maleki-Ravasan N, Karami M, Forouzan E, Karimian F, Naeimi S, Choobdar N.	Microbiome	10.1186/s40168-022-01456-z	2023
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Genetics	Noncontiguous finished genome sequence and description of Nocardioides massiliensis sp. nov. GD13(T).	Dubourg G, Sankar SA, Rathored J, Lagier JC, Robert C, Couderc C, Papazian L, Raoult D, Fournier PE.	New Microbes New Infect	10.1016/j.nmni.2016.01.001	2016
Phylogeny	Nocardioides convexus sp. nov. and Nocardioides anomalus sp. nov., isolated from soil and mineral water.	Park Y, Liu Q, Maeng S, Choi WJ, Chang Y, Im WT.	Int J Syst Evol Microbiol	10.1099/ijsem.0.004547	2020
Phylogeny	Nocardioides flavescens sp. nov., isolated from soil of Gaoligong Mountain, PR China.	Zhang K, Jiang LQ, An DF, Lang L, Li GD, Jiang MG, Li QY, Jiang CL, Jiang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004473	2020
Phylogeny	Nocardioides halotolerans sp. nov., isolated from soil on Bigeum Island, Korea.	Dastager SG, Lee JC, Ju YJ, Park DJ, Kim CJ	Syst Appl Microbiol	10.1016/j.syapm.2007.10.003	2008

References

#7991	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19273
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nocardioides halotolerans (DSM 19273, KCTC 19274, MSL-23)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000422805

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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