Name: Nocardioides daphniae D287
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11131

Type strain:

Species: Nocardioides daphniae

Strain Designation: D287

Culture col. no.: DSM 18664, CCM 7403, JCM 16608

Strain history: CCM 7403 <-- DSM 18664 <-- E. M. Tóth D287.

NCBI tax ID(s): 402297 (species)

SI-ID 408088

DSM 18664

Section

Nocardioides daphniae D287 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from Daphnia cucullata.

Gram-positive
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Nocardioides*
	Species	**Nocardioides daphniae**
	Full Scientific Name (LPSN)	Nocardioides daphniae Tóth et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32319]	Gram stain	positive

[Ref.: #32319]	Cell length	1.7 µm

[Ref.: #32319]	Cell width	0.9 µm

[Ref.: #32319]	Cell shape	rod-shaped

[Ref.: #32319]	Motility	no

[Ref.: #19770]	Colony color	Zinc yellow (1018)
[Ref.: #19770]	Incubation period	10-14 days
[Ref.: #19770]	Cultivation medium used	ISP 2

[Ref.: #19770]	Colony color	Zinc yellow (1018)
[Ref.: #19770]	Incubation period	10-14 days
[Ref.: #19770]	Cultivation medium used	ISP 3

[Ref.: #19770]	Colony color	Zinc yellow (1018)
[Ref.: #19770]	Incubation period	10-14 days
[Ref.: #19770]	Cultivation medium used	ISP 4

[Ref.: #19770]	Colony color	Zinc yellow (1018)
[Ref.: #19770]	Incubation period	10-14 days
[Ref.: #19770]	Cultivation medium used	ISP 5

[Ref.: #19770]	Colony color	Zinc yellow (1018)
[Ref.: #19770]	Incubation period	10-14 days
[Ref.: #19770]	Cultivation medium used	ISP 6

[Ref.: #19770]	Colony color	Zinc yellow (1018)
[Ref.: #19770]	Incubation period	10-14 days
[Ref.: #19770]	Cultivation medium used	ISP 7

[Ref.: #32319]

Pigment production

yes

[Ref.: #19770]	Multicellular complex forming ability	no
[Ref.: #19770]	Medium Name (multicellularity)	ISP 2

[Ref.: #19770]	Multicellular complex forming ability	no
[Ref.: #19770]	Medium Name (multicellularity)	ISP 3

[Ref.: #19770]	Multicellular complex forming ability	no
[Ref.: #19770]	Medium Name (multicellularity)	ISP 4

[Ref.: #19770]	Multicellular complex forming ability	no
[Ref.: #19770]	Medium Name (multicellularity)	ISP 5

[Ref.: #19770]	Multicellular complex forming ability	no
[Ref.: #19770]	Medium Name (multicellularity)	ISP 6

[Ref.: #19770]	Multicellular complex forming ability	no
[Ref.: #19770]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7645]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #7645]

Culture medium growth

[Ref.: #7645]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7645]

Culture medium composition

expand / minimize

[Ref.: #19770]

Culture medium

ISP 2

[Ref.: #19770]

Culture medium growth

[Ref.: #19770]

Culture medium composition

expand / minimize

[Ref.: #19770]

Culture medium

ISP 3

[Ref.: #19770]

Culture medium growth

[Ref.: #19770]

Culture medium composition

expand / minimize

[Ref.: #19770]

Culture medium

ISP 4

[Ref.: #19770]

Culture medium growth

[Ref.: #19770]

Culture medium composition

expand / minimize

[Ref.: #19770]

Culture medium

ISP 5

[Ref.: #19770]

Culture medium growth

[Ref.: #19770]

Culture medium composition

expand / minimize

[Ref.: #19770]

Culture medium

ISP 6

[Ref.: #19770]

Culture medium growth

[Ref.: #19770]

Culture medium composition

expand / minimize

[Ref.: #19770]

Culture medium

ISP 7

[Ref.: #19770]

Culture medium growth

[Ref.: #19770]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7645]	growth	28 °C
[Ref.: #19770]	optimum	28 °C
[Ref.: #32319]	growth	04-38 °C
[Ref.: #32319]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #7645]	Temperature range	mesophilic
[Ref.: #19770]	Temperature range	mesophilic
[Ref.: #32319]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32319]			optimum	8
[Ref.: #32319]			growth	5.5-10.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32319]

Oxygen tolerance

aerobe

[Ref.: #32319]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32319]		NaCl		growth	0-5	%

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32319]	2,3-butanediol ChEBI	+	carbon source
[Ref.: #32319]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #32319]	acetate ChEBI	+	carbon source
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #32319]	fructose ChEBI	+	carbon source
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #32319]	glucose ChEBI	+	carbon source
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #32319]	inosine ChEBI	+	carbon source
[Ref.: #32319]	lactate ChEBI	+	carbon source
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #32319]	malate ChEBI	+	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #32319]	mannose ChEBI	+	carbon source
[Ref.: #32319]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #32319]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #32319]	pyruvate ChEBI	+	carbon source
[Ref.: #32319]	ribose ChEBI	+	carbon source
[Ref.: #32319]	sorbitol ChEBI	+	carbon source
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #32319]	thymidine ChEBI	+	carbon source
[Ref.: #32319]	trehalose ChEBI	+	carbon source
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #32319]	uridine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #32319]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68379]	pyrazinamidase	+	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #19770]	310	-	+	+	+	-	-	+	-	-	+	+	not determinedn.d.	-	-	-	-	-	-	+	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19770]	594	not determinedn.d.	+	+	+	+	+	-	-	+	-	+	-	-	-	-	+	-	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	lipoate biosynthesis	100	5 of 5
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	teichoic acid biosynthesis	100	1 of 1
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	isoleucine metabolism	100	8 of 8
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	flavin biosynthesis	86.67	13 of 15
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	glycolate and glyoxylate degradation	83.33	5 of 6
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	80	4 of 5
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	leucine metabolism	76.92	10 of 13
[Ref.: #66794]	alanine metabolism	75.86	22 of 29
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	lactate fermentation	75	3 of 4
[Ref.: #66794]	pentose phosphate pathway	72.73	8 of 11
[Ref.: #66794]	NAD metabolism	72.22	13 of 18
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	71.43	5 of 7
[Ref.: #66794]	propionate fermentation	70	7 of 10
[Ref.: #66794]	threonine metabolism	70	7 of 10
[Ref.: #66794]	pyrimidine metabolism	68.89	31 of 45
[Ref.: #66794]	glutamate and glutamine metabolism	67.86	19 of 28
[Ref.: #66794]	lipid metabolism	67.74	21 of 31
[Ref.: #66794]	purine metabolism	67.02	63 of 94
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	serine metabolism	66.67	6 of 9
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	valine metabolism	66.67	6 of 9
[Ref.: #66794]	oxidative phosphorylation	65.93	60 of 91
[Ref.: #66794]	histidine metabolism	65.52	19 of 29
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	heme metabolism	64.29	9 of 14
[Ref.: #66794]	citric acid cycle	64.29	9 of 14
[Ref.: #66794]	photosynthesis	64.29	9 of 14
[Ref.: #66794]	non-pathway related	63.16	24 of 38
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	vitamin B1 metabolism	61.54	8 of 13
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	tryptophan metabolism	60.53	23 of 38
[Ref.: #66794]	methionine metabolism	57.69	15 of 26
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	glutathione metabolism	57.14	8 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	57.14	8 of 14
[Ref.: #66794]	isoprenoid biosynthesis	53.85	14 of 26
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	vitamin B12 metabolism	50	17 of 34
[Ref.: #66794]	Entner Doudoroff pathway	50	5 of 10
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	tyrosine metabolism	50	7 of 14
[Ref.: #66794]	coenzyme A metabolism	50	2 of 4
[Ref.: #66794]	gluconeogenesis	50	4 of 8
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	peptidoglycan biosynthesis	46.67	7 of 15
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	46.15	6 of 13
[Ref.: #66794]	arginine metabolism	45.83	11 of 24
[Ref.: #66794]	proline metabolism	45.45	5 of 11
[Ref.: #66794]	ginsenoside metabolism	43.75	7 of 16
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
[Ref.: #66794]	lysine metabolism	40.48	17 of 42
[Ref.: #66794]	starch degradation	40	4 of 10
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	glycogen metabolism	40	2 of 5
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	creatinine degradation	40	2 of 5
[Ref.: #66794]	sulfate reduction	38.46	5 of 13
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	metabolism of disaccharids	36.36	4 of 11
[Ref.: #66794]	vitamin B6 metabolism	36.36	4 of 11
[Ref.: #66794]	phenol degradation	35	7 of 20
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	1,4-dihydroxy-6-naphthoate biosynthesis	33.33	2 of 6
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	methane metabolism	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	degradation of pentoses	32.14	9 of 28
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	29.41	5 of 17
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	degradation of hexoses	27.78	5 of 18
[Ref.: #66794]	chlorophyll metabolism	27.78	5 of 18
[Ref.: #66794]	arachidonic acid metabolism	27.78	5 of 18
[Ref.: #66794]	d-xylose degradation	27.27	3 of 11
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	ascorbate metabolism	27.27	6 of 22
[Ref.: #66794]	vitamin E metabolism	25	1 of 4
[Ref.: #66794]	butanoate fermentation	25	1 of 4
[Ref.: #66794]	androgen and estrogen metabolism	25	4 of 16
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	carotenoid biosynthesis	22.73	5 of 22
[Ref.: #66794]	aspartate and asparagine metabolism	22.22	2 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7645]	Sample type/isolated from	Daphnia cucullata
[Ref.: #7645]	Geographic location (country and/or sea, region)	Lake Balaton
[Ref.: #7645]	Country	Hungary
[Ref.: #7645]	Country ISO 3 Code	HUN
[Ref.: #7645]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Water flea Daphnia cucullata originating from Lake Balaton
[Ref.: #67770]	Host species	Daphnia cucullata
[Ref.: #67770]	Country	Hungary
[Ref.: #67770]	Country ISO 3 Code	HUN
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host

#Arthropoda

#Crustacea

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM398438 (>99% sequence identity) for Nocardioides daphniae subclade from Microbeatlas

Aquatic Samples	150
Soil Samples	571
Animal Samples	280
Plant Samples	86
Total Samples	1087

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7645]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19770]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7645]	Nocardioides daphniae partial 16S RNA gene, type strain D287T	AM398438	1371	ENA	402297 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Nocardioides daphniae CCM 7403	GCA_014635145	scaffold	GenBank	402297 tax ID	*
[Ref.: #66792]	Nocardioides daphniae JCM 16608	GCA_004777465	complete	GenBank	402297 tax ID	*
[Ref.: #66792]	Nocardioides daphniae strain CCM 7403	402297.4	wgs	PATRIC	402297 tax ID	*
[Ref.: #66792]	Nocardioides daphniae strain JCM 16608	402297.3	complete	PATRIC	402297 tax ID	*
[Ref.: #66792]	Nocardioides daphniae JCM 16608	2841404167	complete	JGI IMG/M	402297 tax ID	*

[Ref.: #7645]	GC-content	69.9 mol%	high performance liquid chromatography (HPLC)
[Ref.: #32319]	GC-content	69.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nocardioides daphniae JCM 16608 NCBI: GCA_004777465.1
[Ref.: #69480]	flagellated	no	93.913	yes
[Ref.: #69480]	gram-positive	yes	88.715	yes
[Ref.: #69480]	anaerobic	no	98.36	yes
[Ref.: #69480]	aerobic	yes	92.432	yes
[Ref.: #69480]	halophile	no	93.951	no
[Ref.: #69480]	spore-forming	no	88.322	yes
[Ref.: #69480]	glucose-util	yes	84.926	yes
[Ref.: #69480]	thermophile	no	98.039	no
[Ref.: #69480]	motile	no	81.977	yes
[Ref.: #69480]	glucose-ferment	no	88.748	yes

Availability in culture collections External links

[Ref.: #7645]

Culture collection no.

DSM 18664, CCM 7403, JCM 16608

[Ref.: #80380]

SI-ID 408088

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides yefusunii sp. nov., isolated from Equus kiang (Tibetan wild ass) faeces.	Huang Y, Wang X, Yang J, Lu S, Lai XH, Jin D, Pu J, Huang Y, Ren Z, Zhu W, Meng J, Dong K, Ge Y, Zhou J, Zhang G, Zhang S, Lei W, Liang H, Xu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.003674	2019	*
Phylogeny	Nocardioides solisilvae sp. nov., isolated from a forest soil.	Sultanpuram VR, Mothe T, Mohammed F	Antonie Van Leeuwenhoek	10.1007/s10482-015-0455-x	2015	*
Phylogeny	Nocardioides daphniae sp. nov., isolated from Daphnia cucullata (Crustacea: Cladocera).	Toth EM, Keki Z, Homonnay ZG, Borsodi AK, Marialigeti K, Schumann P	Int J Syst Evol Microbiol	10.1099/ijs.0.65305-0	2008	*

References

#7645

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18664

#19770

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32319

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28555 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#80380

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408088.1 )

#28555

IJSEM 78 2008 ( DOI 10.1099/ijs.0.65305-0 , PubMed 18175687 )

* These data were automatically processed and therefore are not curated

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