Name: Nocardioides furvisabuli SBS-26
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11121

Type strain:

Species: Nocardioides furvisabuli

Strain Designation: SBS-26

Culture col. no.: DSM 18445, JCM 13813, NRRL B-24465, CIP 109516

Strain history: CIP <- 2007, JCM <- 2006, S.D. Lee, Cheju Nat. Univ., Jeju, Korea: strain SBS-26

NCBI tax ID(s): 375542 (species)

SI-ID 297273

JCM 13813, NRRL B-24465, DSM 18445, CIP 109516

Special Collections

Section

Nocardioides furvisabuli SBS-26 is an aerobe, Gram-positive, motile bacterium that was isolated from beach, black sand.

Gram-positive
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Nocardioides*
	Species	**Nocardioides furvisabuli**
	Full Scientific Name (LPSN)	Nocardioides furvisabuli Lee 2007

Information on morphological and physiological properties Morphology

[Ref.: #31829]	Gram stain	positive
[Ref.: #119498]	Gram stain	positive

[Ref.: #31829]	Cell length	0.9 µm

[Ref.: #31829]	Cell width	0.45 µm

[Ref.: #31829]	Cell shape	rod-shaped
[Ref.: #119498]	Cell shape	rod-shaped

[Ref.: #31829]	Motility	yes
[Ref.: #119498]	Motility	no

[Ref.: #31829]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7474]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7474]

Culture medium growth

[Ref.: #7474]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7474]

Culture medium composition

expand / minimize

[Ref.: #37750]

Culture medium

MEDIUM 112 - for Janibacter

[Ref.: #37750]

Culture medium growth

[Ref.: #37750]

Culture medium composition

expand / minimize

[Ref.: #119498]

Culture medium

CIP Medium 112

[Ref.: #119498]

Culture medium growth

[Ref.: #119498]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7474]	growth	28 °C
[Ref.: #31829]	growth	4-37 °C
[Ref.: #31829]	optimum	30 °C
[Ref.: #37750]	growth	30 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #31829]			optimum	7.1
[Ref.: #31829]			growth	5.1-10.1

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31829]

Oxygen tolerance

aerobe

[Ref.: #31829]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31829]		NaCl		growth	0-6	%
[Ref.: #31829]		NaCl		optimum	3	%

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31829]	acetate ChEBI	+	carbon source
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31829]	arabinose ChEBI	+	carbon source
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31829]	cellobiose ChEBI	+	carbon source
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31829]	citrate ChEBI	+	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31829]	formate ChEBI	+	carbon source
[Ref.: #31829]	fructose ChEBI	+	carbon source
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31829]	galactose ChEBI	+	carbon source
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31829]	glucose ChEBI	+	carbon source
[Ref.: #31829]	glycerol ChEBI	+	carbon source
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31829]	lactose ChEBI	+	carbon source
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31829]	malate ChEBI	+	carbon source
[Ref.: #31829]	maltose ChEBI	+	carbon source
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31829]	mannitol ChEBI	+	carbon source
[Ref.: #31829]	mannose ChEBI	+	carbon source
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31829]	myo-inositol ChEBI	+	carbon source
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31829]	nitrate ChEBI	+	reduction
[Ref.: #119498]	nitrate ChEBI	+	reduction
[Ref.: #119498]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31829]	raffinose ChEBI	+	carbon source
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31829]	ribitol ChEBI	+	carbon source
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31829]	sorbitol ChEBI	+	carbon source
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31829]	succinate ChEBI	+	carbon source
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31829]	trehalose ChEBI	+	carbon source
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31829]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #119498]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #31829]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #31829]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31829]	catalase	+	1.11.1.6
[Ref.: #119498]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119498]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119498]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #119498]	11577	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119498]	11923	-	+	+	+	-	+	+	+	-	-	+	+	+	+	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7474]	Sample type/isolated from	beach, black sand
[Ref.: #7474]	Geographic location (country and/or sea, region)	Jeju
[Ref.: #7474]	Country	Republic of Korea
[Ref.: #7474]	Country ISO 3 Code	KOR
[Ref.: #7474]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Black sand around Samyang Beach
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jeju Island
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #119498]	Sample type/isolated from	Environment, Black sand
[Ref.: #119498]	Geographic location (country and/or sea, region)	Samyang beach, Jeju Island
[Ref.: #119498]	Country	Republic of Korea
[Ref.: #119498]	Country ISO 3 Code	KOR
[Ref.: #119498]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Coast
#Environmental	#Terrestrial	#Sandy

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ411542 (>99% sequence identity) for Nocardioides from Microbeatlas

Aquatic Samples	100
Soil Samples	65
Animal Samples	125
Plant Samples	16
Total Samples	306

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7474]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119498]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7474]	Nocardioides furvisabuli strain SBS-26 16S ribosomal RNA gene, partial sequence	DQ411542	1398	GenBank ENA	375542 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Nocardioides furvisabuli JCM 13813	GCA_021083185	contig	GenBank ENA	375542 tax ID	*

[Ref.: #7474]	GC-content	69.1 mol%
[Ref.: #67770]	GC-content	69.1 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nocardioides furvisabuli JCM 13813 NCBI: GCA_021083185.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	88.505	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.273	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.925	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	63.069	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.486	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	72.6	no

Availability in culture collections External links

[Ref.: #7474]

Culture collection no.

DSM 18445, JCM 13813, NRRL B-24465, CIP 109516

[Ref.: #80370]

SI-ID 297273

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides lacusdianchii sp. nov., an attached bacterium of Microcystis aeruginosa.	Xiao Y, Wang L, Wang X, Chen M, Chen J, Tian BY, Zhang BH	Antonie Van Leeuwenhoek	10.1007/s10482-021-01690-9	2021	*
Phylogeny	Nocardioides astragali sp. nov., isolated from a nodule of wild Astragalus chrysopterus in northwestern China.	Xu L, Zhang Y, Li C, Wang X, Liu J, Friman VP	Antonie Van Leeuwenhoek	10.1007/s10482-018-1020-1	2018	*
Phylogeny	Nocardioides cavernae sp. nov., an actinobacterium isolated from a karst cave.	Han MX, Fang BZ, Tian Y, Zhang WQ, Jiao JY, Liu L, Zhang ZT, Xiao M, Wei DQ, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001676	2017	*
Phylogeny	Nocardioides flavus sp. nov., isolated from marine sediment.	Wang S, Zhou Y, Zhang G	Int J Syst Evol Microbiol	10.1099/ijsem.0.001507	2016	*
Phylogeny	Nocardioides hwasunensis sp. nov.	Lee SD, Lee DW, Kim JS	Int J Syst Evol Microbiol	10.1099/ijs.0.65015-0	2008	*
Phylogeny	Nocardioides furvisabuli sp. nov., isolated from black sand.	Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.64444-0	2007	*

References

#7474

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18445

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31829

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28095 (see below)

#37750 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#80370

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297273.1 )

#119498 Collection of Institut Pasteur ; Curators of the CIP; CIP 109516

#28095

IJSEM 35 2007 ( DOI 10.1099/ijs.0.64444-0 , PubMed 17220437 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Nocardioides furvisabuli in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Nocardioides furvisabuli JCM 13813

Change proposal

Change proposal