Name: Nocardioides aquiterrae GW-9
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11118

Type strain:

Species: Nocardioides aquiterrae

Strain Designation: GW-9

Culture col. no.: DSM 17295, CIP 108375, JCM 11813, KCCM 41647

Strain history: CIP <- 2004, JCM <- 2002, J.H. Yoon: strain GW-9

NCBI tax ID(s): 203799 (species)

SI-ID 130848

JCM 11813, CIP 108375, DSM 17295

Special Collections

Section

Nocardioides aquiterrae GW-9 is an aerobe, Gram-positive, motile bacterium that was isolated from groundwater.

Gram-positive
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Nocardioides*
	Species	**Nocardioides aquiterrae**
	Full Scientific Name (LPSN)	Nocardioides aquiterrae Yoon et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #29907]	Gram stain	positive
[Ref.: #116463]	Gram stain	positive

[Ref.: #29907]	Cell length	1.7-2.0 µm

[Ref.: #29907]	Cell width	0.8-1 µm

[Ref.: #29907]	Cell shape	rod-shaped
[Ref.: #116463]	Cell shape	rod-shaped

[Ref.: #29907]	Motility	yes
[Ref.: #116463]	Motility	no

[Ref.: #29907]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6880]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #6880]

Culture medium growth

[Ref.: #6880]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6880]

Culture medium composition

expand / minimize

[Ref.: #33953]

Culture medium

MEDIUM 116 - for Streptomyces, Nocardia, Streptosporangium and Mycobacterium chlorophenolicum

[Ref.: #33953]

Culture medium growth

[Ref.: #33953]

Culture medium composition

expand / minimize

[Ref.: #116463]

Culture medium

CIP Medium 116

[Ref.: #116463]

Culture medium growth

[Ref.: #116463]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6880]		growth	28 °C
[Ref.: #29907]		growth	15-42 °C
[Ref.: #29907]		optimum	30 °C
[Ref.: #33953]		growth	30 °C
[Ref.: #67770]		growth	28 °C
[Ref.: #116463]		growth	25-37 °C
[Ref.: #116463]	no	growth	10 °C
[Ref.: #116463]	no	growth	41 °C
[Ref.: #116463]	no	growth	45 °C

	pH	Kind of pH		pH
[Ref.: #29907]			optimum	6.5
[Ref.: #29907]			growth	6.0-7.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29907]	Oxygen tolerance	aerobe
[Ref.: #116463]	Oxygen tolerance	obligate aerobe

[Ref.: #29907]

Ability of spore formation

	Salt	Tested relation		Salt conc.
[Ref.: #116463]	NaCl		growth	0-2	%
[Ref.: #116463]	NaCl	no	growth	4	%
[Ref.: #116463]	NaCl	no	growth	6	%
[Ref.: #116463]	NaCl	no	growth	8	%
[Ref.: #116463]	NaCl	no	growth	10	%

[Ref.: #29907]	Observation	aggregates in clumps
[Ref.: #67770]	Observation	quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #116463]	citrate ChEBI	-	carbon source
[Ref.: #116463]	esculin ChEBI	+	hydrolysis
[Ref.: #116463]	hippurate ChEBI	-	hydrolysis
[Ref.: #116463]	nitrate ChEBI	+	reduction
[Ref.: #116463]	nitrate ChEBI	-	respiration
[Ref.: #116463]	nitrite ChEBI	-	reduction
[Ref.: #29907]	rhamnose ChEBI	+	carbon source
[Ref.: #29907]	ribose ChEBI	+	carbon source
[Ref.: #29907]	tween 80 ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #116463]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #116463]		acetoin ChEBI	-
[Ref.: #116463]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #116463]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #116463]	amylase	-
[Ref.: #116463]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116463]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #29907]	cytochrome oxidase	+	1.9.3.1
[Ref.: #116463]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #116463]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #116463]	gelatinase	+/-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #116463]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116463]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116463]	oxidase	+
[Ref.: #116463]	phenylalanine ammonia-lyase	+	4.3.1.24
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #116463]	tryptophan deaminase	-
[Ref.: #116463]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #116463]	2723	not determinedn.d.	+	+	-	+	-	-	-	+	-	+	+	-	-	-	-	+	+	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	+	+	-	-	+	-	-	-	-	+	+	+	+	-	-	-	+	+	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116463]	11129	-	+	+	+	-	+	+	+	+	-	+	+	-	-	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6880]	Sample type/isolated from	groundwater
[Ref.: #6880]	Country	Republic of Korea
[Ref.: #6880]	Country ISO 3 Code	KOR
[Ref.: #6880]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Groundwater
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #116463]	Sample type/isolated from	Environment, Groundwater
[Ref.: #116463]	Country	Republic of Korea
[Ref.: #116463]	Country ISO 3 Code	KOR
[Ref.: #116463]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Groundwater

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6880]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116463]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6880]	Nocardioides aquiterrae strain GW-9 16S ribosomal RNA gene, partial sequence	AF529063	1484	GenBank ENA	203799 tax ID

[Ref.: #6880]	GC-content	73 mol%
[Ref.: #67770]	GC-content	73 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #6880]

Culture collection no.

DSM 17295, CIP 108375, JCM 11813, KCCM 41647

[Ref.: #80367]

SI-ID 130848

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides mangrovi sp. nov., a novel endophytic actinobacterium isolated from root of Kandelia candel.	Chen MS, Chen F, Chen XH, Zheng ZQ, Ma X, Tuo L	Int J Syst Evol Microbiol	10.1099/ijsem.0.005295	2022	*
Phylogeny	Nocardioides gansuensis sp. nov., isolated from geopark soil.	Wu S, Xia X, Zhou Z, Wang D, Wang G	Int J Syst Evol Microbiol	10.1099/ijsem.0.003157	2018	*
Phylogeny	Nocardioides intraradicalis sp. nov., isolated from the roots of Psammosilene tunicoides W. C. Wu et C. Y. Wu.	Huang MJ, Huang HQ, Salam N, Xiao M, Duan YQ, Kim CJ, Li QQ, Chen W, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001274	2016	*
Phylogeny	Nocardioides ginkgobilobae sp. nov., an endophytic actinobacterium isolated from the root of the living fossil Ginkgo biloba L.	Xu H, Zhang S, Cheng J, Asem MD, Zhang MY, Manikprabhu D, Zhang TY, Wu YY, Li WJ, Zhang YX	Int J Syst Evol Microbiol	10.1099/ijsem.0.000983	2016	*
Phylogeny	Nocardioides soli sp. nov., a carbendazim-degrading bacterium isolated from soil under the long-term application of carbendazim.	Sun LN, Zhang J, Gong FF, Wang X, Hu G, Li SP, Hong Q	Int J Syst Evol Microbiol	10.1099/ijs.0.057935-0	2014	*
Phylogeny	Nocardioides panaciterrulae sp. nov., isolated from soil of a ginseng field, with ginsenoside converting activity.	Kim JK, Liu QM, Park HY, Kang MS, Kim SC, Im WT, Yoon MH	Antonie Van Leeuwenhoek	10.1007/s10482-013-9919-z	2013	*
Phylogeny	Nocardioides hungaricus sp. nov., isolated from a drinking water supply system.	Toth EM, Keki Z, Makk J, Homonnay ZG, Marialigeti K, Schumann P	Int J Syst Evol Microbiol	10.1099/ijs.0.022939-0	2010	*
Phylogeny	Nocardioides caricicola sp. nov., an endophytic bacterium isolated from a halophyte, Carex scabrifolia Steud.	Song GC, Yasir M, Bibi F, Chung EJ, Jeon CO, Chung YR	Int J Syst Evol Microbiol	10.1099/ijs.0.019919-0	2010	*
Phylogeny	Nocardioides panacisoli sp. nov., isolated from the soil of a ginseng field.	Cho CH, Lee JS, An DS, Whon TW, Kim SG	Int J Syst Evol Microbiol	10.1099/ijs.0.012690-0	2009	*
Phylogeny	Nocardioides koreensis sp. nov., Nocardioides bigeumensis sp. nov. and Nocardioides agariphilus sp. nov., isolated from soil from Bigeum Island, Korea.	Dastager SG, Lee JC, Ju YJ, Park DJ, Kim CJ	Int J Syst Evol Microbiol	10.1099/ijs.0.65566-0	2008	*
Phylogeny	Nocardioides fonticola sp. nov., a novel actinomycete isolated from spring water.	Chou JH, Cho NT, Arun AB, Young CC, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.65810-0	2008	*
Phylogeny	Nocardioides ganghwensis sp. nov., isolated from tidal flat sediment.	Yi H, Chun J	Int J Syst Evol Microbiol	10.1099/ijs.0.03040-0	2004	*
Phylogeny	Nocardioides aquiterrae sp. nov., isolated from groundwater in Korea.	Yoon JH, Kim IG, Kang KH, Oh TK, Park YH	Int J Syst Evol Microbiol	10.1099/ijs.0.02585-0	2004	*

References

#6880

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17295

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29907

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26279 (see below)

#33953 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#80367

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID130848.1 )

#116463 Collection of Institut Pasteur ; Curators of the CIP; CIP 108375

#26279

IJSEM 71 2004 ( DOI 10.1099/ijs.0.02585-0 , PubMed 14742461 )

* These data were automatically processed and therefore are not curated

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