Name: Nocardioides nitrophenolicus DSM 15529
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11110

Type strain:

Species: Nocardioides nitrophenolicus

Culture col. no.: DSM 15529, CIP 107017, JCM 10703, KCTC 0457BP, NRRL B-24725, NSP 41

Strain history: Y.-H. Park NSP41.

NCBI tax ID(s): 1303688 (strain), 60489 (species)

Section

Nocardioides nitrophenolicus DSM 15529 is a mesophilic bacterium of the family Nocardioidaceae.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Nocardioides*
	Species	**Nocardioides nitrophenolicus**
	Full Scientific Name (LPSN)	Nocardioides nitrophenolicus Yoon et al. 1999

Information on morphological and physiological properties Morphology

[Ref.: #69480]

Gram stain

positive Confidence in %99.719

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5980]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #5980]

Culture medium growth

[Ref.: #5980]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5980]

Culture medium composition

expand / minimize

[Ref.: #39638]

Culture medium

MEDIUM 263 - for Clavibacter, Rathayibacter ratayi, Nocardiodes plantarum

[Ref.: #39638]

Culture medium growth

[Ref.: #39638]

Culture medium composition

expand / minimize

[Ref.: #5980]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #5980]

Culture medium growth

[Ref.: #5980]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5980]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #5980]	growth	28 °C
[Ref.: #39638]	growth	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #5980]	Temperature range	mesophilic
[Ref.: #39638]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %93
[Ref.: #69480]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5980]	Sample type/isolated from	Industrial wastewater
[Ref.: #5980]	Country	Republic of Korea
[Ref.: #5980]	Country ISO 3 Code	KOR
[Ref.: #5980]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Industrial wastewater
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #39638]	Country	Republic of Korea
[Ref.: #39638]	Country ISO 3 Code	KOR
[Ref.: #39638]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered

#Waste

#Industrial wastewater

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5980]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5980]	Nocardioides nitrophenolicus strain NSP 41 16S ribosomal RNA gene, partial sequence	AF005024	1475	ENA	60489 tax ID
[Ref.: #20218]	Nocardioides sp. NSP 41 16S-23S internal transcribed spacer, complete sequence	AF017507	328	ENA	60489 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Nocardioides nitrophenolicus DSM 15529	GCA_016907515	contig	GenBank	60489 tax ID	*
[Ref.: #66792]	Nocardioides nitrophenolicus JCM 10703 JCM 10703	GCA_001313605	contig	GenBank	1303688 tax ID	*
[Ref.: #66792]	Nocardioides nitrophenolicus JCM 10703	1303688.4	wgs	PATRIC	1303688 tax ID	*
[Ref.: #66792]	Nocardioides nitrophenolicus strain DSM 15529	60489.4	wgs	PATRIC	60489 tax ID	*
[Ref.: #66792]	Nocardioides nitrophenolicus DSM 15529	2893560988	draft	JGI IMG/M	60489 tax ID	*
[Ref.: #66792]	Nocardioides nitrophenolicus JCM 10703	2734481954	draft	JGI IMG/M	1303688 tax ID	*

[Ref.: #5980]

GC-content

71.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nocardioides nitrophenolicus JCM 10703 PATRIC: 1303688.4
[Ref.: #69480]	gram-positive	yes	99.719	no
[Ref.: #69480]	anaerobic	no	96.037	no
[Ref.: #69480]	spore-forming	no	100	yes
[Ref.: #69480]	thermophile	no	92.387	yes
[Ref.: #69480]	motile	no	71.055	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Nocardioides nitrophenolicus JCM 10703 PATRIC: 1303688.4
[Ref.: #69481]	spore-forming	no	93	no

Availability in culture collections External links

[Ref.: #5980]

Culture collection no.

DSM 15529, CIP 107017, JCM 10703, KCTC 0457BP, NRRL B-24725, NSP 41

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides vastitatis sp. nov., isolated from Taklamakan desert soil.	Liu SW, Xue CM, Li FN, Sun CH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003718	2020	*
Phylogeny	Nocardioides panacisoli sp. nov., isolated from the soil of a ginseng field.	Cho CH, Lee JS, An DS, Whon TW, Kim SG	Int J Syst Evol Microbiol	10.1099/ijs.0.012690-0	2009	*
Phylogeny	Nocardioides caeni sp. nov., isolated from wastewater.	Yoon JH, Kang SJ, Park S, Kim W, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.010124-0	2009	*
Phylogeny	Nocardioides humi sp. nov., a beta-glucosidase-producing bacterium isolated from soil of a ginseng field.	Kim MK, Srinivasan S, Park MJ, Sathiyaraj G, Kim YJ, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.008821-0	2009	*
Phylogeny	Nocardioides nitrophenolicus sp. nov., a p-nitrophenol-degrading bacterium.	Yoon JH, Cho YG, Lee ST, Suzuki K, Nakase T, Park YH	Int J Syst Bacteriol	10.1099/00207713-49-2-675	1999	*
Phylogeny	Nocardioides carbamazepini sp. nov., an ibuprofen degrader isolated from a biofilm bacterial community enriched on carbamazepine.	Benedek T, Papai M, Gharieb K, Bedics A, Tancsics A, Toth E, Daood H, Maroti G, Wirth R, Menashe O, Boka K, Kriszt B	Syst Appl Microbiol	10.1016/j.syapm.2022.126339	2022	*

References

#5980

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15529

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39638 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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