Nocardioides luteus 939-9 is an aerobe, mesophilic prokaryote that was isolated from soil.
aerobe mesophilic genome sequence 16S sequence| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Propionibacteriales |
| Family Nocardioidaceae |
| Genus Nocardioides |
| Species Nocardioides luteus |
| Full scientific name Nocardioides luteus Prauser 1985 |
| BacDive ID | Other strains from Nocardioides luteus (1) | Type strain |
|---|---|---|
| 11103 | N. luteus 71-N54, DSM 46114, IFO 14031, IFO 14396, ... |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 10986 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | Medium recipe at MediaDive | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water | ||
| 40646 | MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulum | Distilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g);Calcium carbonate (2.000 g) | |||
| 10986 | R2A MEDIUM (DSMZ Medium 830) | Medium recipe at MediaDive | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water | ||
| 120707 | CIP Medium 57 | Medium recipe at CIP | |||
| 120707 | CIP Medium 236 | Medium recipe at CIP |
| 67770 | Observationquinones: MK-8(H4) |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 18488 | 22599 ChEBI | arabinose | + | ||
| 68368 | 29016 ChEBI | arginine | + | hydrolysis | from API 20E |
| 18488 | 62968 ChEBI | cellulose | - | ||
| 68368 | 16947 ChEBI | citrate | + | assimilation | from API 20E |
| 18488 | 28757 ChEBI | fructose | + | ||
| 68368 | 5291 ChEBI | gelatin | + | hydrolysis | from API 20E |
| 18488 | 17234 ChEBI | glucose | + | ||
| 68368 | 25094 ChEBI | lysine | + | degradation | from API 20E |
| 18488 | 29864 ChEBI | mannitol | + | ||
| 18488 | 17268 ChEBI | myo-inositol | - | ||
| 68368 | 18257 ChEBI | ornithine | + | degradation | from API 20E |
| 18488 | 16634 ChEBI | raffinose | - | ||
| 18488 | 26546 ChEBI | rhamnose | - | ||
| 18488 | 17992 ChEBI | sucrose | + | ||
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | + | hydrolysis | from API 20E |
| 18488 | 18222 ChEBI | xylose | - |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68368 | arginine dihydrolase | + | 3.5.3.6 | from API 20E |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68368 | gelatinase | + | from API 20E | |
| 68368 | lysine decarboxylase | + | 4.1.1.18 | from API 20E |
| 68368 | ornithine decarboxylase | + | 4.1.1.17 | from API 20E |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 68368 | urease | + | 3.5.1.5 | from API 20E |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | lipoate biosynthesis | 100 | 5 of 5 | ||
| 66794 | vitamin K metabolism | 100 | 5 of 5 | ||
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | ||
| 66794 | biotin biosynthesis | 100 | 4 of 4 | ||
| 66794 | urea cycle | 100 | 13 of 13 | ||
| 66794 | Entner Doudoroff pathway | 100 | 10 of 10 | ||
| 66794 | L-lactaldehyde degradation | 100 | 3 of 3 | ||
| 66794 | resorcinol degradation | 100 | 2 of 2 | ||
| 66794 | valine metabolism | 100 | 9 of 9 | ||
| 66794 | glycolate and glyoxylate degradation | 100 | 6 of 6 | ||
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | ||
| 66794 | enterobactin biosynthesis | 100 | 3 of 3 | ||
| 66794 | adipate degradation | 100 | 2 of 2 | ||
| 66794 | propanol degradation | 100 | 7 of 7 | ||
| 66794 | kanosamine biosynthesis II | 100 | 2 of 2 | ||
| 66794 | teichoic acid biosynthesis | 100 | 1 of 1 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | acetate fermentation | 100 | 4 of 4 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | ||
| 66794 | taurine degradation | 100 | 1 of 1 | ||
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | ethylmalonyl-CoA pathway | 100 | 5 of 5 | ||
| 66794 | octane oxidation | 100 | 3 of 3 | ||
| 66794 | cellulose degradation | 100 | 5 of 5 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | aerobactin biosynthesis | 100 | 1 of 1 | ||
| 66794 | NAD metabolism | 94.44 | 17 of 18 | ||
| 66794 | flavin biosynthesis | 93.33 | 14 of 15 | ||
| 66794 | pentose phosphate pathway | 90.91 | 10 of 11 | ||
| 66794 | phenol degradation | 90 | 18 of 20 | ||
| 66794 | threonine metabolism | 90 | 9 of 10 | ||
| 66794 | tryptophan metabolism | 89.47 | 34 of 38 | ||
| 66794 | molybdenum cofactor biosynthesis | 88.89 | 8 of 9 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | allantoin degradation | 88.89 | 8 of 9 | ||
| 66794 | aspartate and asparagine metabolism | 88.89 | 8 of 9 | ||
| 66794 | 4-hydroxymandelate degradation | 88.89 | 8 of 9 | ||
| 66794 | isoleucine metabolism | 87.5 | 7 of 8 | ||
| 66794 | ketogluconate metabolism | 87.5 | 7 of 8 | ||
| 66794 | reductive acetyl coenzyme A pathway | 85.71 | 6 of 7 | ||
| 66794 | citric acid cycle | 85.71 | 12 of 14 | ||
| 66794 | leucine metabolism | 84.62 | 11 of 13 | ||
| 66794 | phenylalanine metabolism | 84.62 | 11 of 13 | ||
| 66794 | alanine metabolism | 82.76 | 24 of 29 | ||
| 66794 | glutamate and glutamine metabolism | 82.14 | 23 of 28 | ||
| 66794 | proline metabolism | 81.82 | 9 of 11 | ||
| 66794 | purine metabolism | 80.85 | 76 of 94 | ||
| 66794 | gallate degradation | 80 | 4 of 5 | ||
| 66794 | factor 420 biosynthesis | 80 | 4 of 5 | ||
| 66794 | phenylacetate degradation (aerobic) | 80 | 4 of 5 | ||
| 66794 | propionate fermentation | 80 | 8 of 10 | ||
| 66794 | 3-chlorocatechol degradation | 80 | 4 of 5 | ||
| 66794 | 4-hydroxyphenylacetate degradation | 80 | 8 of 10 | ||
| 66794 | glycine betaine biosynthesis | 80 | 4 of 5 | ||
| 66794 | arginine metabolism | 79.17 | 19 of 24 | ||
| 66794 | tetrahydrofolate metabolism | 78.57 | 11 of 14 | ||
| 66794 | photosynthesis | 78.57 | 11 of 14 | ||
| 66794 | glutathione metabolism | 78.57 | 11 of 14 | ||
| 66794 | heme metabolism | 78.57 | 11 of 14 | ||
| 66794 | d-mannose degradation | 77.78 | 7 of 9 | ||
| 66794 | serine metabolism | 77.78 | 7 of 9 | ||
| 66794 | CO2 fixation in Crenarchaeota | 77.78 | 7 of 9 | ||
| 66794 | methionine metabolism | 76.92 | 20 of 26 | ||
| 66794 | vitamin B12 metabolism | 76.47 | 26 of 34 | ||
| 66794 | pyrimidine metabolism | 75.56 | 34 of 45 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | cyclohexanol degradation | 75 | 3 of 4 | ||
| 66794 | gluconeogenesis | 75 | 6 of 8 | ||
| 66794 | sulfopterin metabolism | 75 | 3 of 4 | ||
| 66794 | CMP-KDO biosynthesis | 75 | 3 of 4 | ||
| 66794 | butanoate fermentation | 75 | 3 of 4 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 75 | 6 of 8 | ||
| 66794 | peptidoglycan biosynthesis | 73.33 | 11 of 15 | ||
| 66794 | d-xylose degradation | 72.73 | 8 of 11 | ||
| 66794 | histidine metabolism | 72.41 | 21 of 29 | ||
| 66794 | cardiolipin biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | non-pathway related | 71.05 | 27 of 38 | ||
| 66794 | glycolysis | 70.59 | 12 of 17 | ||
| 66794 | starch degradation | 70 | 7 of 10 | ||
| 66794 | vitamin B1 metabolism | 69.23 | 9 of 13 | ||
| 66794 | lipid metabolism | 67.74 | 21 of 31 | ||
| 66794 | methane metabolism | 66.67 | 2 of 3 | ||
| 66794 | sulfoquinovose degradation | 66.67 | 2 of 3 | ||
| 66794 | IAA biosynthesis | 66.67 | 2 of 3 | ||
| 66794 | 3-phenylpropionate degradation | 66.67 | 10 of 15 | ||
| 66794 | selenocysteine biosynthesis | 66.67 | 4 of 6 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | cyanate degradation | 66.67 | 2 of 3 | ||
| 66794 | cysteine metabolism | 66.67 | 12 of 18 | ||
| 66794 | oxidative phosphorylation | 65.93 | 60 of 91 | ||
| 66794 | metabolism of disaccharids | 63.64 | 7 of 11 | ||
| 66794 | degradation of sugar alcohols | 62.5 | 10 of 16 | ||
| 66794 | dTDPLrhamnose biosynthesis | 62.5 | 5 of 8 | ||
| 66794 | androgen and estrogen metabolism | 62.5 | 10 of 16 | ||
| 66794 | C4 and CAM-carbon fixation | 62.5 | 5 of 8 | ||
| 66794 | lysine metabolism | 61.9 | 26 of 42 | ||
| 66794 | degradation of hexoses | 61.11 | 11 of 18 | ||
| 66794 | degradation of pentoses | 60.71 | 17 of 28 | ||
| 66794 | glycogen metabolism | 60 | 3 of 5 | ||
| 66794 | D-cycloserine biosynthesis | 60 | 3 of 5 | ||
| 66794 | degradation of sugar acids | 60 | 15 of 25 | ||
| 66794 | bile acid biosynthesis, neutral pathway | 58.82 | 10 of 17 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 58.33 | 7 of 12 | ||
| 66794 | tyrosine metabolism | 57.14 | 8 of 14 | ||
| 66794 | ubiquinone biosynthesis | 57.14 | 4 of 7 | ||
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | ||
| 66794 | aminopropanol phosphate biosynthesis | 50 | 1 of 2 | ||
| 66794 | sphingosine metabolism | 50 | 3 of 6 | ||
| 66794 | ribulose monophosphate pathway | 50 | 1 of 2 | ||
| 66794 | myo-inositol biosynthesis | 50 | 5 of 10 | ||
| 66794 | carnitine metabolism | 50 | 4 of 8 | ||
| 66794 | ethanol fermentation | 50 | 1 of 2 | ||
| 66794 | isoprenoid biosynthesis | 50 | 13 of 26 | ||
| 66794 | quinate degradation | 50 | 1 of 2 | ||
| 66794 | phenylmercury acetate degradation | 50 | 1 of 2 | ||
| 66794 | lactate fermentation | 50 | 2 of 4 | ||
| 66794 | glycine metabolism | 50 | 5 of 10 | ||
| 66794 | mannosylglycerate biosynthesis | 50 | 1 of 2 | ||
| 66794 | sulfate reduction | 46.15 | 6 of 13 | ||
| 66794 | vitamin B6 metabolism | 45.45 | 5 of 11 | ||
| 66794 | cholesterol biosynthesis | 45.45 | 5 of 11 | ||
| 66794 | nitrate assimilation | 44.44 | 4 of 9 | ||
| 66794 | lipid A biosynthesis | 44.44 | 4 of 9 | ||
| 66794 | benzoyl-CoA degradation | 42.86 | 3 of 7 | ||
| 66794 | ascorbate metabolism | 40.91 | 9 of 22 | ||
| 66794 | coenzyme M biosynthesis | 40 | 4 of 10 | ||
| 66794 | arachidonate biosynthesis | 40 | 2 of 5 | ||
| 66794 | metabolism of amino sugars and derivatives | 40 | 2 of 5 | ||
| 66794 | chlorophyll metabolism | 38.89 | 7 of 18 | ||
| 66794 | phenylpropanoid biosynthesis | 38.46 | 5 of 13 | ||
| 66794 | phosphatidylethanolamine bioynthesis | 38.46 | 5 of 13 | ||
| 66794 | polyamine pathway | 34.78 | 8 of 23 | ||
| 66794 | 1,4-dihydroxy-6-naphthoate biosynthesis | 33.33 | 2 of 6 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | (5R)-carbapenem carboxylate biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | arachidonic acid metabolism | 33.33 | 6 of 18 | ||
| 66794 | aclacinomycin biosynthesis | 28.57 | 2 of 7 | ||
| 66794 | dolichyl-diphosphooligosaccharide biosynthesis | 27.27 | 3 of 11 | ||
| 66794 | vitamin E metabolism | 25 | 1 of 4 | ||
| 66794 | toluene degradation | 25 | 1 of 4 | ||
| 66794 | alginate biosynthesis | 25 | 1 of 4 | ||
| 66794 | catecholamine biosynthesis | 25 | 1 of 4 | ||
| 66794 | carotenoid biosynthesis | 22.73 | 5 of 22 | ||
| 66794 | daunorubicin biosynthesis | 22.22 | 2 of 9 |
Global distribution of 16S sequence AF005007 (>99% sequence identity) for Nocardioides from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 124043 | ASM3145821v1 assembly for Nocardioides luteus DSM 43366 | contig | 1844 | 77.19 | ||||
| 124043 | ASM4243096v1 assembly for Nocardioides luteus JCM 3358 | scaffold | 1844 | 67.84 | ||||
| 124043 | ASM2792180v1 assembly for Nocardioides luteus VKM Ac-1246 | scaffold | 1844 | 60.47 | ||||
| 66792 | ASM1464859v1 assembly for Nocardioides luteus JCM 3358 | scaffold | 1844 | 57.02 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Nocardioides luteus 16S ribosomal RNA gene, partial sequence | AF005007 | 1469 | 1844 | ||
| 20218 | Nocardioides luteus strain KCTC 9575 16S-23S internal transcribed spacer, complete sequence | AF017492 | 473 | 1844 | ||
| 20218 | Nocardioides luteus partial 16S rRNA | X53212 | 1447 | 1844 | ||
| 124043 | Nocardioides luteus strain JCM 3358 16S ribosomal RNA gene, partial sequence. | MT760455 | 1312 | 1844 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 67770 | 67.5 | thermal denaturation, midpoint method (Tm) |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | yes | 57.40 | no |
| 125439 | motility | BacteriaNetⓘ | no | 80.40 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 99.90 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 99.50 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 90.04 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 99.19 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 91.70 | yes |
| 125438 | spore-forming | spore-formingⓘ | yes | 62.02 | no |
| 125438 | thermophilic | thermophileⓘ | no | 95.11 | no |
| 125438 | flagellated | motile2+ⓘ | no | 90.60 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Compilation of small ribosomal subunit RNA structures. | Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R. | Nucleic Acids Res | 10.1093/nar/21.13.3025 | 1993 | ||
| Detection of antibiotic-producing Actinobacteria in the sediment and water of Ma'in thermal springs (Jordan). | Hussein EI, Jacob JH, Shakhatreh MAK, Al-Razaq MAA, Juhmani AF, Cornelison CT. | Germs | 10.18683/germs.2018.1146 | 2018 | ||
| Metabolic characterization of alkane monooxygenases and the growth phenotypes of Pseudomonas aeruginosa ATCC 33988 on hydrocarbons. | Gunasekera TS, Bowen LL, Alger JC. | J Bacteriol | 10.1128/jb.00508-24 | 2025 | ||
| Rokubacteria in Northern Peatlands: Habitat Preferences and Diversity Patterns. | Ivanova AA, Oshkin IY, Danilova OV, Philippov DA, Ravin NV, Dedysh SN. | Microorganisms | 10.3390/microorganisms10010011 | 2021 | ||
| Metabolism | Conversion of 7-deoxy-10-deacetylbaccatin-III into 6-alpha-hydroxy-7-deoxy-10-deacetylbaccatin-III by Nocardioides luteus. | Hanson RL, Kant J, Patel RN. | Biotechnol Appl Biochem | 10.1042/ba20030093 | 2004 | |
| Metabolism | Characterization of JP-7 jet fuel degradation by the bacterium Nocardioides luteus strain BAFB. | Jung CM, Broberg C, Giuliani J, Kirk LL, Hanne LF. | J Basic Microbiol | 10.1002/1521-4028(200205)42:2<127::aid-jobm127>3.0.co;2-c | 2002 | |
| Cross-Bioaugmentation Among Four Remote Soil Samples Contaminated With Oil Exerted Just Inconsistent Effects on Oil-Bioremediation. | Al-Mailem DM, Kansour MK, Radwan SS. | Front Microbiol | 10.3389/fmicb.2019.02827 | 2019 | ||
| Bioaugmentation failed to enhance oil bioremediation in three soil samples from three different continents. | Radwan SS, Al-Mailem DM, Kansour MK. | Sci Rep | 10.1038/s41598-019-56099-2 | 2019 | ||
| Fermentation and isolation of C10-deacetylase for the production of 10-deacetylbaccatin III from baccatin III. | Nanduri VB, Hanson RL, Laporte TL, Ko RY, Patel RN, Szarka LJ. | Biotechnol Bioeng | 10.1002/bit.260480518 | 1995 | ||
| Enzymology | Application of multiplex PCR using species-specific primers within the 16S rRNA gene for rapid identification of Nocardioides strains. | Park YH, Yoon JH, Lee ST. | Int J Syst Bacteriol | 10.1099/00207713-48-3-895 | 1998 | |
| Genetic analyses of the genus Nocardioides and related taxa based on 16S-23S rDNA internally transcribed spacer sequences. | Yoon HJ, Lee ST, Park YH. | Int J Syst Bacteriol | 10.1099/00207713-48-3-641 | 1998 | ||
| Genetics | New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes. | Kroeger ME, Delmont TO, Eren AM, Meyer KM, Guo J, Khan K, Rodrigues JLM, Bohannan BJM, Tringe SG, Borges CD, Tiedje JM, Tsai SM, Nusslein K. | Front Microbiol | 10.3389/fmicb.2018.01635 | 2018 | |
| Metabolism | Site-specific enzymatic hydrolysis of taxanes at C-10 and C-13. | Hanson RL, Wasylyk JM, Nanduri VB, Cazzulino DL, Patel RN, Szarka LJ. | J Biol Chem | 10.1016/s0021-9258(17)31767-2 | 1994 | |
| Genetics | Genome-wide analysis of horizontally acquired genes in the genus Mycobacterium. | Panda A, Drancourt M, Tuller T, Pontarotti P. | Sci Rep | 10.1038/s41598-018-33261-w | 2018 | |
| Enzymology | Renibacterium salmoninarum, the causative agent of bacterial kidney disease in salmonid fish, detected by nested reverse transcription-PCR of 16S rRNA sequences. | Magnusson HB, Fridjonsson OH, Andresson OS, Benediktsdottir E, Gudmundsdottir S, Andresdottir V. | Appl Environ Microbiol | 10.1128/aem.60.12.4580-4583.1994 | 1994 | |
| Genetics | Structure of a teichoic acid from Nocardioides luteus VKM Ac-1246T cell wall. | Shashkov AS, Tul'skaya EM, Evtushenko LI, Gratchev AA, Naumova IB | Biochemistry (Mosc) | BCM65040598 | 2000 | |
| Phylogeny | Inter- and intraspecific phylogenetic analysis of the genus Nocardioides and related taxa based on 16S rDNA sequences. | Yoon JH, Lee ST, Park YH | Int J Syst Bacteriol | 10.1099/00207713-48-1-187 | 1998 | |
| Genetics | Polyphasic characterization and genomic insights into Nocardioides turkmenicus sp. nov. isolated from a desert soil. | Saygin H, Guven K, Cetin D, Sahin N. | Antonie Van Leeuwenhoek | 10.1007/s10482-023-01920-2 | 2024 | |
| Genetics | Noncontiguous finished genome sequence and description of Nocardioides massiliensis sp. nov. GD13(T). | Dubourg G, Sankar SA, Rathored J, Lagier JC, Robert C, Couderc C, Papazian L, Raoult D, Fournier PE. | New Microbes New Infect | 10.1016/j.nmni.2016.01.001 | 2016 | |
| Phylogeny | Nocardioides albertanoniae sp. nov., isolated from Roman catacombs. | Alias-Villegas C, Jurado V, Laiz L, Miller AZ, Saiz-Jimenez C | Int J Syst Evol Microbiol | 10.1099/ijs.0.043885-0 | 2012 | |
| Phylogeny | Nocardioides panzhihuaensis sp. nov., a novel endophytic actinomycete isolated from medicinal plant Jatropha curcas L. | Qin S, Yuan B, Zhang YJ, Bian GK, Tamura T, Sun BZ, Li WJ, Jiang JH | Antonie Van Leeuwenhoek | 10.1007/s10482-012-9745-8 | 2012 | |
| Phylogeny | Nocardioides aestuarii sp. nov., isolated from tidal flat sediment. | Yi H, Chun J | Int J Syst Evol Microbiol | 10.1099/ijs.0.63192-0 | 2004 |
| #10986 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43366 |
| #18488 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #40646 | ; Curators of the CIP; |
| #54000 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 37986 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #120707 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103450 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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