Name: Nocardioides jensenii DSM 20641
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11099

Type strain:

Species: Nocardioides jensenii

Culture col. no.: DSM 20641, ATCC 49810, IAM 12581, IFO 14755, IMET 10678, JCM 1364, NBRC 14755, NCIB 9770, CCUG 37988, CIP 102404, CNF 091, IMSNU 22036, KCTC 9134, LMG 16325, NCIMB 9770, PCM 2328, VKM Ac-1878

Strain history: CIP <- 1986, DSM, Pimelobacter jensenii <- NCIB <- C.W. Evans <- H.L. Jensen, Corynebacterium simplex

NCBI tax ID(s): 1303683 (strain), 1843 (species)

SI-ID 9324

LMG 16325, CIP 102404, DSM 20641, IAM 12581, IFO 14755, IMET 10678, JCM 1364, NCIMB 9770, ATCC 49810, NCIB9770, CCUG 37988, VKM Ac-1878, KCTC 9134, NBRC 14755

Special Collections

Other strains from Nocardioides jensenii

Section

Nocardioides jensenii DSM 20641 is a bacterium that was isolated from Soil.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Nocardioides*
	Species	**Nocardioides jensenii**
	Full Scientific Name (LPSN)	Nocardioides jensenii (Suzuki and Komagata 1983) Collins et al. 1989

Synonym

Pimelobacter jensenii

Information on morphological and physiological properties Morphology

[Ref.: #18452]	Colony color	Transparent
[Ref.: #18452]	Incubation period	10-14 days
[Ref.: #18452]	Cultivation medium used	ISP 2

[Ref.: #18452]	Colony color	Transparent
[Ref.: #18452]	Incubation period	10-14 days
[Ref.: #18452]	Cultivation medium used	ISP 3

[Ref.: #18452]	Colony color	Transparent
[Ref.: #18452]	Incubation period	10-14 days
[Ref.: #18452]	Cultivation medium used	ISP 4

[Ref.: #18452]	Colony color	Transparent
[Ref.: #18452]	Incubation period	10-14 days
[Ref.: #18452]	Cultivation medium used	ISP 5

[Ref.: #18452]	Colony color	Transparent
[Ref.: #18452]	Incubation period	10-14 days
[Ref.: #18452]	Cultivation medium used	ISP 6

[Ref.: #18452]	Colony color	Transparent
[Ref.: #18452]	Incubation period	10-14 days
[Ref.: #18452]	Cultivation medium used	ISP 7

[Ref.: #18452]	Multicellular complex forming ability	no
[Ref.: #18452]	Medium Name (multicellularity)	ISP 2

[Ref.: #18452]	Multicellular complex forming ability	no
[Ref.: #18452]	Medium Name (multicellularity)	ISP 3

[Ref.: #18452]	Multicellular complex forming ability	no
[Ref.: #18452]	Medium Name (multicellularity)	ISP 4

[Ref.: #18452]	Multicellular complex forming ability	no
[Ref.: #18452]	Medium Name (multicellularity)	ISP 5

[Ref.: #18452]	Multicellular complex forming ability	no
[Ref.: #18452]	Medium Name (multicellularity)	ISP 6

[Ref.: #18452]	Multicellular complex forming ability	no
[Ref.: #18452]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8987]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #8987]

Culture medium growth

[Ref.: #8987]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8987]

Culture medium composition

expand / minimize

[Ref.: #18452]

Culture medium

ISP 2

[Ref.: #18452]

Culture medium growth

[Ref.: #18452]

Culture medium composition

expand / minimize

[Ref.: #18452]

Culture medium

ISP 3

[Ref.: #18452]

Culture medium growth

[Ref.: #18452]

Culture medium composition

expand / minimize

[Ref.: #18452]

Culture medium

ISP 4

[Ref.: #18452]

Culture medium growth

[Ref.: #18452]

Culture medium composition

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[Ref.: #18452]

Culture medium

ISP 5

[Ref.: #18452]

Culture medium growth

[Ref.: #18452]

Culture medium composition

expand / minimize

[Ref.: #18452]

Culture medium

ISP 6

[Ref.: #18452]

Culture medium growth

[Ref.: #18452]

Culture medium composition

expand / minimize

[Ref.: #18452]

Culture medium

ISP 7

[Ref.: #18452]

Culture medium growth

[Ref.: #18452]

Culture medium composition

expand / minimize

[Ref.: #39665]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #39665]

Culture medium growth

[Ref.: #39665]

Culture medium composition

expand / minimize

[Ref.: #120342]

Culture medium

CIP Medium 3

[Ref.: #120342]

Culture medium growth

[Ref.: #120342]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8987]	growth	28 °C
[Ref.: #39665]	growth	25 °C
[Ref.: #54002]	growth	30 °C
[Ref.: #67770]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18452]		NaCl		maximum	5	%

[Ref.: #8987]	Murein short key	A41.01
[Ref.: #8987]	Murein types	A3gamma LL-Dpm-Gly

[Ref.: #20216]	Observation	Degrades dinitro-o-cresol herbicides
[Ref.: #67770]	Observation	quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #54002]

Fatty acid	Percentage	ECL
C18:1 ω9c	15	17.769
C16:0 iso	13.9	15.626
C15:0 ISO	8.6	14.621
Unidentified	8	15.938
C17:1 ω8c	5.6	16.792
C17:0 iso	5.3	16.629
C16:0	4.1	16
C17:0	3.5	17
C17:1 ω6c	3.4	16.862
C16:1 ω7c	3.1	15.819
Unidentified	3	18.098
C16:1 ISO H	2.7	15.461
TBSA 10Me18:0	2	18.392
C18:0	2	18
C17:0 anteiso	1.8	16.722
C17:1 ω9c ISO	1.8	16.416
Unidentified	1.6	17.115
Unidentified	1.4	17.304
Unidentified	1.4	14.929
C15:0	1.3	15
Unidentified	1.2	16.296
Unidentified	1.1	17.879
C17:0 10-methyl	1.1	17.41
Unidentified	1.1	16.938
C18:1 ω7c /12t/9t	0.9	17.824
C14:0 ISO	0.6	13.618
C15:0 ANTEISO	0.6	14.711
C18:0 ISO	0.5	17.632
Unidentified	0.5	18.31
C16:0 2OH	0.5	17.233
C19:0 ANTEISO	0.4	18.729
C15:0 ISO 3OH	0.4	16.135
C14:0	0.4	14
C16:1 ω9c	0.3	15.774
C13:0 3OH/C15:1 i I/H	0.3	14.469
C15:1 ω6c	0.3	14.856
C13:0 iso	0.2	12.612

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18452]	39	-	-	-	-	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18452]	163	not determinedn.d.	+	-	-	+	+	+	+	+	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #54002]	Sample type/isolated from	Soil

[Ref.: #67770]	Sample type/isolated from	Soil

[Ref.: #120342]	Sample type/isolated from	Environment, Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Z78210 (>99% sequence identity) for Nocardioides jensenii from Microbeatlas

Aquatic Samples	5
Soil Samples	23
Animal Samples	24
Plant Samples	3
Total Samples	55

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18452]	Biosafety level	1
[Ref.: #8987]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120342]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Nocardioides jensenii partial 16S rRNA	X53214	1452	GenBank ENA	1843 tax ID	*
[Ref.: #20218]	N.jensenii 16S rRNA gene	Z78210	1467	GenBank ENA	1843 tax ID	*
[Ref.: #20218]	Nocardioides jensenii 16S ribosomal RNA gene, partial sequence	AF005006	1473	GenBank ENA	1843 tax ID	*
[Ref.: #20218]	Nocardioides jensenii strain KCTC 9134 16S-23S internal transcribed spacer, complete sequence	AF017491	344	GenBank ENA	1843 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Nocardioides jensenii JCM 1364 = NBRC 14755	GCA_001552535	contig	GenBank ENA	1303683 tax ID
[Ref.: #66792]	Nocardioides jensenii JCM 1364 = NBRC 14755	GCA_001313485	contig	GenBank ENA	1303683 tax ID	*
[Ref.: #66792]	Nocardioides jensenii JCM 1364 = NBRC 14755	1303683.6	wgs	PATRIC	1303683 tax ID	*
[Ref.: #66792]	Nocardioides jensenii JCM 1364 = NBRC 14755	1303683.4	wgs	PATRIC	1303683 tax ID	*
[Ref.: #66792]	Nocardioides jensenii JCM 1364, NBRC 14755	2731957589	draft	JGI IMG/M	1303683 tax ID	*
[Ref.: #66792]	Nocardioides jensenii JCM 1364, NBRC 14755	2734481948	draft	JGI IMG/M	1303683 tax ID	*

[Ref.: #8987]	GC-content	68.8 mol%
[Ref.: #67770]	GC-content	68.8 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nocardioides jensenii JCM 1364 = NBRC 14755 PATRIC: 1303683.6
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	83.395	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.571	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	68.218	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	82.973	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.486	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88.25	no

Availability in culture collections External links

[Ref.: #8987]

Culture collection no.

DSM 20641, ATCC 49810, IAM 12581, IFO 14755, IMET 10678, JCM 1364, NBRC 14755, NCIB 9770, CCUG 37988, CIP 102404, CNF 091, IMSNU 22036, KCTC 9134, LMG 16325, NCIMB 9770, PCM 2328, VKM Ac-1878

[Ref.: #80348]

SI-ID 9324

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides jejuensis sp. nov., isolated from soil.	Jang JH, Maeng S, Jung HY, Kim MK, Subramani G	Antonie Van Leeuwenhoek	10.1007/s10482-019-01343-y	2019	*
Phylogeny	Nocardioides gilvus sp. nov., isolated from Namtso Lake.	Zhang HX, Wang K, Xu ZX, Chen GJ, Du ZJ	Antonie Van Leeuwenhoek	10.1007/s10482-016-0735-0	2016	*
Phylogeny	Nocardioides pakistanensis sp. nov., isolated from a hot water spring of Tatta Pani in Pakistan.	Amin A, Ahmed I, Habib N, Abbas S, Xiao M, Hozzein WN, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-016-0711-8	2016	*
Phylogeny	Nocardioides daejeonensis sp. nov., a denitrifying bacterium isolated from sludge in a sewage-disposal plant.	Woo SG, Srinivasan S, Yang J, Jung YA, Kim MK, Lee M	Int J Syst Evol Microbiol	10.1099/ijs.0.033308-0	2011	*
Phylogeny	Nocardioides iriomotensis sp. nov., an actinobacterium isolated from forest soil.	Yamamura H, Ohkubo SY, Nakagawa Y, Ishida Y, Hamada M, Otoguro M, Tamura T, Hayakawa M	Int J Syst Evol Microbiol	10.1099/ijs.0.025080-0	2010	*
Phylogeny	Nocardioides mesophilus sp. nov., isolated from soil.	Dastager SG, Lee JC, Pandey A, Kim CJ	Int J Syst Evol Microbiol	10.1099/ijs.0.019059-0	2009	*
Phylogeny	Nocardioides daedukensis sp. nov., a halotolerant bacterium isolated from soil.	Yoon JH, Park S, Kang SJ, Lee JS, Lee KC, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.015354-0	2009	*
Phylogeny	Nocardioides dilutes sp. nov. isolated from soil in Bigeum Island, Korea.	Dastager SG, Lee JC, Ju YJ, Park DJ, Kim CJ	Curr Microbiol	10.1007/s00284-008-9125-9	2008	*
Phylogeny	Marmoricola aequoreus sp. nov., a novel actinobacterium isolated from marine sediment.	Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.64696-0	2007	*

References

#8987

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20641

#18452

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39665 ; Curators of the CIP;
#54002 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 37988

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#80348

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID9324.1 )

#120342 Collection of Institut Pasteur ; Curators of the CIP; CIP 102404
* These data were automatically processed and therefore are not curated

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Search for species Nocardioides jensenii in external resources:
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PANGAEA
GBIF

Nocardioides jensenii JCM 1364 = NBRC 14755

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