Nocardioides jensenii DSM 20641 is a mesophilic prokaryote that was isolated from Soil.
mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Propionibacteriales |
| Family Nocardioidaceae |
| Genus Nocardioides |
| Species Nocardioides jensenii |
| Full scientific name Nocardioides jensenii (Suzuki and Komagata 1983) Collins et al. 1989 |
| Synonyms (1) |
| BacDive ID | Other strains from Nocardioides jensenii (1) | Type strain |
|---|---|---|
| 104698 | N. jensenii ST027449(HKI), |
| @ref | Gram stain | Confidence | |
|---|---|---|---|
| 125439 | positive | 99.4 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 8987 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Medium recipe at MediaDive | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water | ||
| 18452 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 18452 | ISP 3 | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |||
| 18452 | ISP 4 | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |||
| 18452 | ISP 5 | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |||
| 18452 | ISP 6 | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 18452 | ISP 7 | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 39665 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 120342 | CIP Medium 3 | Medium recipe at CIP |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | obligate aerobe | 99 |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 18452 | NaCl | positive | maximum | 5 % |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 8987 | A41.01 | A3gamma LL-Dpm-Gly |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 68368 | 16947 ChEBI | citrate | + | assimilation | from API 20E |
| 68368 | 5291 ChEBI | gelatin | + | hydrolysis | from API 20E |
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | + | hydrolysis | from API 20E |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | - | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68368 | beta-galactosidase | - | 3.2.1.23 | from API 20E |
| 68382 | cystine arylamidase | + | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 68368 | gelatinase | + | from API 20E | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | + | from API zym | |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 68368 | urease | + | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | + | from API zym |
| Metadata FA analysis | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| method/protocol | CCUG | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| @ref | 54002 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Global distribution of 16S sequence Z78210 (>99% sequence identity) for Nocardioides jensenii from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | ASM155253v1 assembly for Nocardioides jensenii JCM 1364 = NBRC 14755 | contig | 1303683 | 41.27 | ||||
| 66792 | ASM131348v1 assembly for Nocardioides jensenii JCM 1364 = NBRC 14755 | contig | 1303683 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Nocardioides jensenii partial 16S rRNA | X53214 | 1452 | 1843 | ||
| 20218 | N.jensenii 16S rRNA gene | Z78210 | 1467 | 1843 | ||
| 20218 | Nocardioides jensenii 16S ribosomal RNA gene, partial sequence | AF005006 | 1473 | 1843 | ||
| 20218 | Nocardioides jensenii strain KCTC 9134 16S-23S internal transcribed spacer, complete sequence | AF017491 | 344 | 1843 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 59.30 | no |
| 125439 | motility | BacteriaNetⓘ | no | 80.40 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 99.40 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 99.00 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 83.40 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 93.57 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 68.22 | no |
| 125438 | aerobic | aerobicⓘ | yes | 82.97 | no |
| 125438 | thermophilic | thermophileⓘ | no | 93.49 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 88.25 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Metabolism | Isolation and characterization of microorganisms capable of cleaving the ether bond of 2-phenoxyacetophenone. | Oya S, Tonegawa S, Nakagawa H, Habe H, Furuya T. | Sci Rep | 10.1038/s41598-022-06816-1 | 2022 | |
| Enzymology | Application of multiplex PCR using species-specific primers within the 16S rRNA gene for rapid identification of Nocardioides strains. | Park YH, Yoon JH, Lee ST. | Int J Syst Bacteriol | 10.1099/00207713-48-3-895 | 1998 | |
| Enzymology | Microcolony cultivation on a soil substrate membrane system selects for previously uncultured soil bacteria. | Ferrari BC, Binnerup SJ, Gillings M. | Appl Environ Microbiol | 10.1128/aem.71.12.8714-8720.2005 | 2005 | |
| Metabolism | Characterization of S-triazine herbicide metabolism by a Nocardioides sp. isolated from agricultural soils. | Topp E, Mulbry WM, Zhu H, Nour SM, Cuppels D. | Appl Environ Microbiol | 10.1128/aem.66.8.3134-3141.2000 | 2000 | |
| Genetics | Solicola gregarius gen. nov., sp. nov., a soil actinobacterium isolated after enhanced cultivation with Micrococcus luteus culture supernatant. | Lopez Marin MA, Suman J, Jani K, Ulbrich P, Cajthaml T, Filipova A, Pajer P, Neumann-Schaal M, Strejcek M, Uhlik O. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005678 | 2023 | |
| Genetics | Draft genome and description of Aeromicrobium phoceense strain Marseille-Q0843T sp. nov., a new bacterium isolated from human healthy skin. | Boxberger M, Ben Khedher M, Magnien S, Cassir N, La Scola B. | New Microbes New Infect | 10.1016/j.nmni.2020.100809 | 2020 | |
| Phylogeny | Nocardia niwae sp. nov., isolated from human pulmonary sources. | Moser BD, Klenk HP, Schumann P, Potter G, Lasker BA, Steigerwalt AG, Hinrikson HP, Brown JM. | Int J Syst Evol Microbiol | 10.1099/ijs.0.020370-0 | 2011 | |
| Phylogeny | Nocardioides donggukensis sp. nov. and Hyunsoonleella aquatilis sp. nov., isolated from Jeongbang Waterfall on Jeju Island. | Kim I, Chhetri G, Kim J, Kang M, So Y, Lee B, Jang W, Seo T. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005176 | 2021 | |
| Phylogeny | Nocardioides dubius sp. nov., isolated from an alkaline soil. | Yoon JH, Lee CH, Oh TK. | Int J Syst Evol Microbiol | 10.1099/ijs.0.63748-0 | 2005 | |
| Phylogeny | Nocardioides jejuensis sp. nov., isolated from soil. | Jang JH, Maeng S, Jung HY, Kim MK, Subramani G | Antonie Van Leeuwenhoek | 10.1007/s10482-019-01343-y | 2019 | |
| Phylogeny | Nocardioides gilvus sp. nov., isolated from Namtso Lake. | Zhang HX, Wang K, Xu ZX, Chen GJ, Du ZJ | Antonie Van Leeuwenhoek | 10.1007/s10482-016-0735-0 | 2016 | |
| Phylogeny | Nocardioides pakistanensis sp. nov., isolated from a hot water spring of Tatta Pani in Pakistan. | Amin A, Ahmed I, Habib N, Abbas S, Xiao M, Hozzein WN, Li WJ | Antonie Van Leeuwenhoek | 10.1007/s10482-016-0711-8 | 2016 | |
| Phylogeny | Nocardioides daejeonensis sp. nov., a denitrifying bacterium isolated from sludge in a sewage-disposal plant. | Woo SG, Srinivasan S, Yang J, Jung YA, Kim MK, Lee M | Int J Syst Evol Microbiol | 10.1099/ijs.0.033308-0 | 2011 | |
| Phylogeny | Nocardioides iriomotensis sp. nov., an actinobacterium isolated from forest soil. | Yamamura H, Ohkubo SY, Nakagawa Y, Ishida Y, Hamada M, Otoguro M, Tamura T, Hayakawa M | Int J Syst Evol Microbiol | 10.1099/ijs.0.025080-0 | 2010 | |
| Phylogeny | Nocardioides mesophilus sp. nov., isolated from soil. | Dastager SG, Lee JC, Pandey A, Kim CJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.019059-0 | 2009 | |
| Phylogeny | Nocardioides daedukensis sp. nov., a halotolerant bacterium isolated from soil. | Yoon JH, Park S, Kang SJ, Lee JS, Lee KC, Oh TK | Int J Syst Evol Microbiol | 10.1099/ijs.0.015354-0 | 2009 | |
| Phylogeny | Nocardioides dilutes sp. nov. isolated from soil in Bigeum Island, Korea. | Dastager SG, Lee JC, Ju YJ, Park DJ, Kim CJ | Curr Microbiol | 10.1007/s00284-008-9125-9 | 2008 | |
| Phylogeny | Marmoricola aequoreus sp. nov., a novel actinobacterium isolated from marine sediment. | Lee SD | Int J Syst Evol Microbiol | 10.1099/ijs.0.64696-0 | 2007 |
| #8987 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20641 |
| #18452 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20216 | Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) . Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI): |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #39665 | ; Curators of the CIP; |
| #54002 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 37988 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #120342 | Collection of Institut Pasteur ; Curators of the CIP; CIP 102404 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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