Name: Kribbella sancticallisti DSM 19602
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11082

Type strain:

Species: Kribbella sancticallisti

Culture col. no.: DSM 19602, JCM 14969, BC 633, NBRC 105865

Strain history: DSM 19602 <-- C. Urzì BC633.

NCBI tax ID(s): 460087 (species)

SI-ID 402973

DSM 19602

Section

Kribbella sancticallisti DSM 19602 is an aerobe, spore-forming, mesophilic bacterium that was isolated from tufacean surface, catacomb St. callistus.

Gram-positive
rod-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Kribbellaceae*
	Genus	*Kribbella*
	Species	**Kribbella sancticallisti**
	Full Scientific Name (LPSN)	Kribbella sancticallisti Urzì et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32517]	Gram stain	positive

[Ref.: #32517]	Cell width	0.51 µm

[Ref.: #32517]	Cell shape	rod-shaped

[Ref.: #32517]	Motility	no

[Ref.: #18339]	Colony color	Cream (9001)
[Ref.: #18339]	Incubation period	10-14 days
[Ref.: #18339]	Cultivation medium used	ISP 2

[Ref.: #18339]	Colony color	Cream (9001)
[Ref.: #18339]	Incubation period	10-14 days
[Ref.: #18339]	Cultivation medium used	ISP 3

[Ref.: #18339]	Colony color	Cream (9001)
[Ref.: #18339]	Incubation period	10-14 days
[Ref.: #18339]	Cultivation medium used	ISP 4

[Ref.: #18339]	Colony color	Cream (9001)
[Ref.: #18339]	Incubation period	10-14 days
[Ref.: #18339]	Cultivation medium used	ISP 5

[Ref.: #18339]	Colony color	Cream (9001)
[Ref.: #18339]	Incubation period	10-14 days
[Ref.: #18339]	Cultivation medium used	ISP 6

[Ref.: #18339]	Colony color	Cream (9001)
[Ref.: #18339]	Incubation period	10-14 days
[Ref.: #18339]	Cultivation medium used	ISP 7

[Ref.: #32517]

Pigment production

yes

[Ref.: #18339]	Multicellular complex forming ability	no
[Ref.: #18339]	Medium Name (multicellularity)	ISP 2

[Ref.: #18339]	Multicellular complex forming ability	no
[Ref.: #18339]	Medium Name (multicellularity)	ISP 3

[Ref.: #18339]	Multicellular complex forming ability	no
[Ref.: #18339]	Medium Name (multicellularity)	ISP 4

[Ref.: #18339]	Multicellular complex forming ability	no
[Ref.: #18339]	Medium Name (multicellularity)	ISP 5

[Ref.: #18339]	Multicellular complex forming ability	no
[Ref.: #18339]	Medium Name (multicellularity)	ISP 6

[Ref.: #18339]	Multicellular complex forming ability	no
[Ref.: #18339]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8205]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #8205]

Culture medium growth

[Ref.: #8205]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8205]

Culture medium composition

expand / minimize

[Ref.: #18339]

Culture medium

ISP 2

[Ref.: #18339]

Culture medium growth

[Ref.: #18339]

Culture medium composition

expand / minimize

[Ref.: #18339]

Culture medium

ISP 3

[Ref.: #18339]

Culture medium growth

[Ref.: #18339]

Culture medium composition

expand / minimize

[Ref.: #18339]

Culture medium

ISP 4

[Ref.: #18339]

Culture medium growth

[Ref.: #18339]

Culture medium composition

expand / minimize

[Ref.: #18339]

Culture medium

ISP 5

[Ref.: #18339]

Culture medium growth

[Ref.: #18339]

Culture medium composition

expand / minimize

[Ref.: #18339]

Culture medium

ISP 6

[Ref.: #18339]

Culture medium growth

[Ref.: #18339]

Culture medium composition

expand / minimize

[Ref.: #18339]

Culture medium

ISP 7

[Ref.: #18339]

Culture medium growth

[Ref.: #18339]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8205]	growth	28 °C
[Ref.: #18339]	optimum	28 °C
[Ref.: #32517]	growth	10-37 °C
[Ref.: #32517]	optimum	10-37 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #8205]	Temperature range	mesophilic
[Ref.: #18339]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32517]			optimum	7
[Ref.: #32517]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32517]

Oxygen tolerance

aerobe

[Ref.: #32517]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32517]		NaCl		growth	0-5	%
[Ref.: #32517]		NaCl		optimum	0-5	%

[Ref.: #32517]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32517]	arabinose ChEBI	+	carbon source
[Ref.: #32517]	esculin ChEBI	+	hydrolysis
[Ref.: #32517]	fructose ChEBI	+	carbon source
[Ref.: #32517]	galactose ChEBI	+	carbon source
[Ref.: #32517]	gluconate ChEBI	+	carbon source
[Ref.: #32517]	glycerol ChEBI	+	carbon source
[Ref.: #32517]	lactose ChEBI	+	carbon source
[Ref.: #32517]	malate ChEBI	+	carbon source
[Ref.: #32517]	maltose ChEBI	+	carbon source
[Ref.: #32517]	mannitol ChEBI	+	carbon source
[Ref.: #32517]	mannose ChEBI	+	carbon source
[Ref.: #32517]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32517]	nitrate ChEBI	+	reduction
[Ref.: #32517]	raffinose ChEBI	+	carbon source
[Ref.: #32517]	rhamnose ChEBI	+	carbon source
[Ref.: #32517]	sucrose ChEBI	+	carbon source
[Ref.: #32517]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #32517]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #32517]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18339]	49	not determinedn.d.	+	+	+	+	+	-	-	-	-	+	-	+	+	-	+	+	+	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8205]	Sample type/isolated from	tufacean surface, catacomb St. callistus
[Ref.: #8205]	Geographic location (country and/or sea, region)	Rome
[Ref.: #8205]	Country	Italy
[Ref.: #8205]	Country ISO 3 Code	ITA
[Ref.: #8205]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Tufacean surfaces in the Roman catacombs of St Callistus
[Ref.: #67770]	Geographic location (country and/or sea, region)	Rome
[Ref.: #67770]	Country	Italy
[Ref.: #67770]	Country ISO 3 Code	ITA
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	-
#Environmental	#Terrestrial	#Geologic

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18339]	Biosafety level	1	German classification
[Ref.: #8205]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8205]	Kribbella sancallistae partial 16S rRNA gene, type strain BC633T	AM778577	1380	ENA	460087 tax ID

Availability in culture collections External links

[Ref.: #8205]

Culture collection no.

DSM 19602, JCM 14969, BC 633, NBRC 105865

[Ref.: #80331]

SI-ID 402973

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kribbella monticola sp. nov., a novel actinomycete isolated from soil.	Song W, Duan L, Zhao J, Jiang S, Guo X, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003007	2018	*
Phylogeny	Kribbella qitaiheensis sp. nov., a novel actinomycete isolated from soil.	Guo L, Zhao J, Liu C, Han C, Bai L, Sun P, Li J, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-015-0446-y	2015	*
Phylogeny	Kribbella catacumbae sp. nov. and Kribbella sancticallisti sp. nov., isolated from whitish-grey patinas in the catacombs of St Callistus in Rome, Italy.	Urzi C, De Leo F, Schumann P	Int J Syst Evol Microbiol	10.1099/ijs.0.65613-0	2008	*

References

#8205

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19602

#18339

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32517

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28737 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#80331

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402973.1 )

#28737

IJSEM 2090 2008 ( DOI 10.1099/ijs.0.65613-0 , PubMed 18768610 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Kribbella sancticallisti in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF