Name: Aeromicrobium ponti HSW-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11065

Type strain:

Species: Aeromicrobium ponti

Strain Designation: HSW-1

Culture col. no.: DSM 19178, KACC 20565, JCM 16375

Strain history: KACC 20565 <-- S. D. Lee HSW-1.

NCBI tax ID(s): 460257 (species)

SI-ID 397644

DSM 19178

Section

Aeromicrobium ponti HSW-1 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from sea water.

Gram-positive
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Aeromicrobium*
	Species	**Aeromicrobium ponti**
	Full Scientific Name (LPSN)	Aeromicrobium ponti Lee and Lee 2008

Information on morphological and physiological properties Morphology

[Ref.: #32492]	Gram stain	positive

[Ref.: #32492]	Cell length	2.4 µm

[Ref.: #32492]	Cell width	0.7 µm

[Ref.: #32492]	Cell shape	rod-shaped

[Ref.: #32492]	Motility	no

[Ref.: #19776]	Colony color	Saffron yellow (1017)
[Ref.: #19776]	Incubation period	10-14 days
[Ref.: #19776]	Cultivation medium used	ISP 2

[Ref.: #19776]	Colony color	Saffron yellow (1017)
[Ref.: #19776]	Incubation period	10-14 days
[Ref.: #19776]	Cultivation medium used	ISP 7

[Ref.: #32492]

Pigment production

yes

[Ref.: #19776]	Multicellular complex forming ability	no
[Ref.: #19776]	Medium Name (multicellularity)	ISP 2

[Ref.: #19776]	Multicellular complex forming ability	no
[Ref.: #19776]	Medium Name (multicellularity)	ISP 3

[Ref.: #19776]	Multicellular complex forming ability	no
[Ref.: #19776]	Medium Name (multicellularity)	ISP 4

[Ref.: #19776]	Multicellular complex forming ability	no
[Ref.: #19776]	Medium Name (multicellularity)	ISP 5

[Ref.: #19776]	Multicellular complex forming ability	no
[Ref.: #19776]	Medium Name (multicellularity)	ISP 6

[Ref.: #19776]	Multicellular complex forming ability	no
[Ref.: #19776]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7950]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #7950]

Culture medium growth

[Ref.: #7950]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7950]

Culture medium composition

expand / minimize

[Ref.: #19776]

Culture medium

ISP 2

[Ref.: #19776]

Culture medium growth

[Ref.: #19776]

Culture medium composition

expand / minimize

[Ref.: #19776]

Culture medium

ISP 7

[Ref.: #19776]

Culture medium growth

[Ref.: #19776]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7950]	growth	28 °C
[Ref.: #19776]	optimum	28 °C
[Ref.: #32492]	growth	04-42 °C
[Ref.: #32492]	optimum	33.5 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #7950]	Temperature range	mesophilic
[Ref.: #19776]	Temperature range	mesophilic
[Ref.: #32492]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32492]			optimum	6.1
[Ref.: #32492]			growth	4.1-12.1

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32492]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32492]		NaCl		growth	<10	%

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32492]	arabinose ChEBI	+	carbon source
[Ref.: #32492]	cellobiose ChEBI	+	carbon source
[Ref.: #32492]	citrate ChEBI	+	carbon source
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #32492]	galactose ChEBI	+	carbon source
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #32492]	glucose ChEBI	+	carbon source
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #32492]	maltose ChEBI	+	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #32492]	salicin ChEBI	+	carbon source
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #32492]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32492]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #32492]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #32492]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #32492]	gelatinase	+
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #19776]	315	-	-	-	+	-	-	+	-	-	+	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19776]	600	not determinedn.d.	+	-	+	+	+	-	-	+	-	+	+	-	-	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7950]	Sample type/isolated from	sea water
[Ref.: #7950]	Geographic location (country and/or sea, region)	Jeju
[Ref.: #7950]	Country	Republic of Korea
[Ref.: #7950]	Country ISO 3 Code	KOR
[Ref.: #7950]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Seawater at Hwasun Beach on the coast of Jeju Island
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM778683 (>99% sequence identity) for Aeromicrobium ponti from Microbeatlas

Aquatic Samples	41
Soil Samples	144
Animal Samples	40
Plant Samples	21
Total Samples	246

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7950]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19776]	Biosafety level	1	Risk group

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7950]	Aeromicrobium ponti partial 16S rRNA gene, type strain HSW-1T	AM778683	1396	ENA	460257 tax ID

[Ref.: #7950]	GC-content	74 mol%
[Ref.: #67770]	GC-content	74 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #7950]

Culture collection no.

DSM 19178, KACC 20565, JCM 16375

[Ref.: #80314]

SI-ID 397644

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aeromicrobium lacus sp. nov., a novel actinobacterium isolated from a drinking-water reservoir.	Sun Y, Liu WH, Ai MJ, Su J, Yu LY, Zhang YQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003181	2018	*
Phylogeny	Aeromicrobium halocynthiae sp. nov., a taurocholic acid-producing bacterium isolated from the marine ascidian Halocynthia roretzi.	Kim SH, Yang HO, Sohn YC, Kwon HC	Int J Syst Evol Microbiol	10.1099/ijs.0.016618-0	2010	*
Phylogeny	Aeromicrobium ponti sp. nov., isolated from seawater.	Lee DW, Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.65575-0	2008	*

References

#7950

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19178

#19776

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32492

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28712 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#80314

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397644.1 )

#28712

IJSEM 987 2008 ( DOI 10.1099/ijs.0.65575-0 , PubMed 18398207 )

* These data were automatically processed and therefore are not curated

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