Name: Aeromicrobium alkaliterrae KSL-107
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11058

Type strain:

Species: Aeromicrobium alkaliterrae

Strain Designation: KSL-107

Culture col. no.: DSM 16824, CIP 108938, JCM 13518, KCTC 19073, BCRC 16830

Strain history: CIP <- 2005, DSMZ <- J-H Yoon, KRIBB, Taejon, Korea: strain KSL-107

NCBI tax ID(s): 302168 (species)

SI-ID 232306

KCTC 19073, DSM 16824, JCM 13518, CIP 108938, BCRC 16830, CCRC 16830

Special Collections

Section

Aeromicrobium alkaliterrae KSL-107 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from soil.

coccus-shaped
Gram-positive
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Aeromicrobium*
	Species	**Aeromicrobium alkaliterrae**
	Full Scientific Name (LPSN)	Aeromicrobium alkaliterrae Yoon et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31446]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #116249]	Gram stain	positive

[Ref.: #31446]	Cell length	1.25 µm

[Ref.: #31446]	Cell width	1.25 µm

[Ref.: #31446]	Cell shape	coccus-shaped
[Ref.: #116249]	Cell shape	oval-shaped

[Ref.: #31446]	Motility	no
[Ref.: #116249]	Motility	no

[Ref.: #18405]	Colony color	Beige (1001)
[Ref.: #18405]	Incubation period	10-14 days
[Ref.: #18405]	Cultivation medium used	ISP 2

[Ref.: #18405]	Colony color	Beige (1001)
[Ref.: #18405]	Incubation period	10-14 days
[Ref.: #18405]	Cultivation medium used	ISP 3

[Ref.: #18405]	Colony color	Beige (1001)
[Ref.: #18405]	Incubation period	10-14 days
[Ref.: #18405]	Cultivation medium used	ISP 4

[Ref.: #18405]	Colony color	Beige (1001)
[Ref.: #18405]	Incubation period	10-14 days
[Ref.: #18405]	Cultivation medium used	ISP 6

[Ref.: #18405]	Incubation period	10-14 days
[Ref.: #18405]	Cultivation medium used	ISP 5

[Ref.: #18405]	Incubation period	10-14 days
[Ref.: #18405]	Cultivation medium used	ISP 7

[Ref.: #31446]

Pigment production

yes

[Ref.: #18405]	Multicellular complex forming ability	no
[Ref.: #18405]	Medium Name (multicellularity)	ISP 2

[Ref.: #18405]	Multicellular complex forming ability	no
[Ref.: #18405]	Medium Name (multicellularity)	ISP 3

[Ref.: #18405]	Multicellular complex forming ability	no
[Ref.: #18405]	Medium Name (multicellularity)	ISP 4

[Ref.: #18405]	Multicellular complex forming ability	no
[Ref.: #18405]	Medium Name (multicellularity)	ISP 5

[Ref.: #18405]	Multicellular complex forming ability	no
[Ref.: #18405]	Medium Name (multicellularity)	ISP 6

[Ref.: #18405]	Multicellular complex forming ability	no
[Ref.: #18405]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6616]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #6616]

Culture medium growth

[Ref.: #6616]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6616]

Culture medium composition

expand / minimize

[Ref.: #18405]

Culture medium

ISP 2

[Ref.: #18405]

Culture medium growth

[Ref.: #18405]

Culture medium composition

expand / minimize

[Ref.: #18405]

Culture medium

ISP 7

[Ref.: #18405]

Culture medium growth

[Ref.: #18405]

Culture medium composition

expand / minimize

[Ref.: #18405]

Culture medium

ISP 6

[Ref.: #18405]

Culture medium growth

[Ref.: #18405]

Culture medium composition

expand / minimize

[Ref.: #18405]

Culture medium

ISP 5

[Ref.: #18405]

Culture medium growth

[Ref.: #18405]

Culture medium composition

expand / minimize

[Ref.: #18405]

Culture medium

ISP 4

[Ref.: #18405]

Culture medium growth

[Ref.: #18405]

Culture medium composition

expand / minimize

[Ref.: #18405]

Culture medium

ISP 3

[Ref.: #18405]

Culture medium growth

[Ref.: #18405]

Culture medium composition

expand / minimize

[Ref.: #6616]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #6616]

Culture medium growth

[Ref.: #6616]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6616]

Culture medium composition

expand / minimize

[Ref.: #116249]

Culture medium

CIP Medium 338

[Ref.: #116249]

Culture medium growth

[Ref.: #116249]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #6616]	growth	28 °C
[Ref.: #18405]	optimum	28 °C
[Ref.: #31446]	growth	4.0-35.0 °C
[Ref.: #31446]	optimum	19.5 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #31446]			optimum	7.25
[Ref.: #31446]			growth	6.0-11.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31446]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #116249]	Oxygen tolerance	obligate aerobe

[Ref.: #31446]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31446]		NaCl		growth	0-9	%

[Ref.: #31446]	Observation	aggregates in clumps
[Ref.: #67770]	Observation	quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31446]	arginine ChEBI	+	carbon source
[Ref.: #31446]	cellobiose ChEBI	+	carbon source
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #31446]	galactose ChEBI	+	carbon source
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #31446]	malate ChEBI	+	carbon source
[Ref.: #116249]	nitrate ChEBI	-	reduction
[Ref.: #116249]	nitrite ChEBI	-	reduction
[Ref.: #31446]	succinate ChEBI	+	carbon source
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #31446]	tween 20 ChEBI	+	carbon source
[Ref.: #31446]	tween 40 ChEBI	+	carbon source
[Ref.: #31446]	tween 60 ChEBI	+	carbon source
[Ref.: #31446]	tween 80 ChEBI	+	carbon source
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #31446]	hydrogen sulfide ChEBI	yes
[Ref.: #31446]	indole ChEBI	yes
[Ref.: #116249]	indole ChEBI	no

	Physiological tests	Metabolite	Indole test
[Ref.: #31446]		indole ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #116249]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #116249]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #116249]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #116249]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116249]	oxidase	-
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #116249]	urease	-	3.5.1.5
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #18405]	89	not determinedn.d.	-	+	+	-	-	+	-	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	+	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18405]	115	not determinedn.d.	+	+	+	+	+	-	-	+	+	+	-	-	-	-	+	-	-	-	-
[Ref.: #116249]	11562	-	+	+	+	+	+	+	-	-	-	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6616]	Sample type/isolated from	soil
[Ref.: #6616]	Geographic location (country and/or sea, region)	Kwangchun
[Ref.: #6616]	Country	Republic of Korea
[Ref.: #6616]	Country ISO 3 Code	KOR
[Ref.: #6616]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Alkaline soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kwangchun
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #116249]	Sample type/isolated from	Environment, Alkaline soil
[Ref.: #116249]	Geographic location (country and/or sea, region)	Kwangchun
[Ref.: #116249]	Country	Republic of Korea
[Ref.: #116249]	Country ISO 3 Code	KOR
[Ref.: #116249]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18405]	Biosafety level	1	German classification
[Ref.: #6616]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116249]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6616]	Aeromicrobium alkaliterrae 16S ribosomal RNA gene, partial sequence	AY822044	1473	GenBank ENA	302168 tax ID

[Ref.: #6616]	GC-content	71.5 mol%
[Ref.: #67770]	GC-content	71.5 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #6616]

Culture collection no.

DSM 16824, CIP 108938, JCM 13518, KCTC 19073, BCRC 16830

[Ref.: #80307]

SI-ID 232306

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aeromicrobium camelliae sp. nov., isolated from Pu'er tea.	Niu L, Xiong M, Tang T, Song L, Hu X, Zhao M, Zhang K	Int J Syst Evol Microbiol	10.1099/ijsem.0.000583	2015	*
Phylogeny	Aeromicrobium alkaliterrae sp. nov., isolated from an alkaline soil, and emended description of the genus Aeromicrobium.	Yoon JH, Lee CH, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.63582-0	2005	*

References

#6616

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16824

#18405

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31446

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27749 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#80307

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID232306.1 )

#116249 Collection of Institut Pasteur ; Curators of the CIP; CIP 108938

#27749

IJSEM 2171 2005 ( DOI 10.1099/ijs.0.63582-0 , PubMed 16166727 )

* These data were automatically processed and therefore are not curated

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