Rhodococcus nanhaiensis (DSM 45608, CCTCC AB 2011024, SCSIO 10187)

Name: Rhodococcus nanhaiensis (DSM 45608, CCTCC AB 2011024, SCSIO 10187)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11050

Type strain

Culture col. no. DSM 45608 CCTCC AB 2011024 SCSIO 10187

NCBI tax ID(s) 1081097

Special Collections DSMZ Wink compendium Literature strains

History <- J. Li, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China; SCSIO 10187

Links

Rhodococcus nanhaiensis DSM 45608 is an aerobe, Gram-positive bacterium that was isolated from marine sediment.

Gram-positive aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 405307

DSM 45608

@ref 20215

Last LPSN update 2026-02-09 11:20:25

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Nocardiaceae

Genus Rhodococcus

Species Rhodococcus nanhaiensis

Full scientific name Rhodococcus nanhaiensis Li et al. 2012

BacDive ID	Other strains from **Rhodococcus nanhaiensis** (1)	Type strain
11051	R. nanhaiensis DSM 45609, CCTCC AB 2011025, SCSIO 10197

Morphology

Cell morphology

@ref	Gram stain	Motility
30525	positive

Colony morphology

@ref	Colony color	Medium used
69412	Honey yellow (1005)	suter without tyrosine
69412	Maize yellow (1006)	ISP 7
69412	Sand yellow (1002)	ISP 2
69412	Sand yellow (1002)	ISP 4
69412	Sand yellow (1002)	ISP 5
69412	Sand yellow (1002), brown beige (1011)	suter with tyrosine

Multicellular morphology

@ref	Complex name	Medium name
69412	Aerial mycelium	ISP 2
69412	Aerial mycelium	ISP 3
69412	Aerial mycelium	ISP 4
69412	Aerial mycelium	ISP 5
69412	Aerial mycelium	ISP 6
69412	Aerial mycelium	ISP 7
69412	Aerial mycelium	suter with tyrosine
69412	Aerial mycelium	suter without tyrosine

Pigmentation

@ref	Production	Name
30525
69412		soluble pigment

Multimedia

@ref:	17762
multimedia content:	DSM_45608.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45608.jpg
caption:	Medium 535 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

@ref:	69412
multimedia content:	DSM_45608_image3.jpeg
multimedia.multimedia content:	DSM_45608_image3.jpeg
caption:	Plates (535, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

@ref:	69412
multimedia content:	DSM_45608_image4.jpeg
multimedia.multimedia content:	DSM_45608_image4.jpeg
caption:	Plates (535, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17762	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17762	positive	growth	28
30525	positive	growth	15-35
30525	positive	optimum	28

Culture pH

@ref	Ability	Type	PH
30525	positive	optimum	6
30525	positive	growth	05-08

Physiology and metabolism

Oxygen tolerance

30525

Oxygen toleranceaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30525	NaCl	positive	growth	0-10 %
30525	NaCl	positive	optimum	5 %
69412	NaCl	positive	growth	0-2.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69412	22599 ChEBI	arabinose	-	growth
69412	62968 ChEBI	cellulose	-	growth
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
30525	28757 ChEBI	fructose	+	carbon source
69412	28757 ChEBI	fructose	+	growth
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
69412	17234 ChEBI	glucose	-	growth
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
69412	17268 ChEBI	inositol	+	growth
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
69412	37684 ChEBI	mannose	-	growth
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
69412	16634 ChEBI	raffinose	-	growth
69412	26546 ChEBI	rhamnose	-	growth
69412	17992 ChEBI	sucrose	-	growth
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
69412	18222 ChEBI	xylose	-	growth

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
30525	catalase	+	1.11.1.6
30525	cytochrome oxidase	+	1.9.3.1
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	-		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68379	urease	-	3.5.1.5	from API Coryne
68382	valine arylamidase	+		from API zym

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69412	-	-	-	+	-	-	+/-	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69412	not determinedn.d.	+	+/-	+	-	+	+	+/-	-	+/-	+	+	-	-	-	+	+/-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
17762	marine sediment	South China Sea (20° 44.8951' N 114° 15.2932' E) at a depth of 84.5 m	China	CHN	Asia	20.7483	114.255 20.7483/114.255

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17762	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17762	Rhodococcus nanhaiensis strain SCSIO 10187 16S ribosomal RNA gene, partial sequence	JN582175	1400		1081097

GC content

@ref	GC-content (mol%)	Method
17762	63.7	high performance liquid chromatography (HPLC)
30525	63.7

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Microorganisms Associated with the Marine Sponge Scopalina hapalia: A Reservoir of Bioactive Molecules to Slow Down the Aging Process.	Said Hassane C, Fouillaud M, Le Goff G, Sklirou AD, Boyer JB, Trougakos IP, Jerabek M, Bignon J, de Voogd NJ, Ouazzani J, Gauvin-Bialecki A, Dufosse L.	Microorganisms	10.3390/microorganisms8091262	2020
Phylogeny	Rhodococcus nanhaiensis sp. nov., an actinobacterium isolated from marine sediment.	Li J, Zhao GZ, Long LJ, Wang FZ, Tian XP, Zhang S, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.038067-0	2011

References

#17762	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45608
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26857	IJSEM 2517 2012 ( DOI 10.1099/ijs.0.038067-0 , PubMed 22180608 )
#30525	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26857
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69412	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Rhodococcus nanhaiensis (DSM 45608, CCTCC AB 2011024, SCSIO 10187)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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