Rhodococcus cercidiphylli (DSM 45141, CCTCC AB 207160, YIM 65003)

Name: Rhodococcus cercidiphylli (DSM 45141, CCTCC AB 207160, YIM 65003)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11049

Type strain

Culture col. no. DSM 45141 CCTCC AB 207160 YIM 65003

NCBI tax ID(s) 489916

Special Collections DSMZ

History <- S.-K. Tang; YIM 65003 <- J. Li

Links

Rhodococcus cercidiphylli DSM 45141 is a mesophilic prokaryote that was isolated from surface sterilized leaf sample of Cercidiphyllum japonicum.

mesophilic 16S sequence

Name and taxonomic classification

SI-ID 400369

DSM 45141

@ref 20215

Last LPSN update 2025-12-16 09:49:29

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Nocardiaceae

Genus Rhodococcus

Species Rhodococcus cercidiphylli

Full scientific name Rhodococcus cercidiphylli Li et al. 2012

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
12385	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
12385	positive	growth	28	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Leaf (Phyllosphere)
#Host Body-Site	#Plant	#Sterilized plant part

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
12385	surface sterilized leaf sample of Cercidiphyllum japonicum	Cercidiphyllum japonicum	Yunnan	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU325542 (>99% sequence identity) for Rhodococcus fascians from Microbeatlas

Aquatic Samples	1939
Soil Samples	894
Animal Samples	3728
Plant Samples	436
Total Samples	6997

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
12385	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
12385	Rhodococcus cercidiphylli strain YIM 65003 16S ribosomal RNA gene, partial sequence	EU325542	1480		489916
124043	Rhodococcus cercidiphylli strain YIM 65003 16S ribosomal RNA gene, partial sequence.	MT569980	1220		489916

GC content

@ref	GC-content (mol%)	Method
12385	67.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Insights into the antibacterial, antioxidant, and fabric colorant applications by pigment-producing actinomycetes from Sof-Umer cave rocks and sediments.	Girma D, Feyisa A, Chaluma E, Mulu D, Geta S, Tafesse M.	BMC Microbiol	10.1186/s12866-025-03959-9	2025
	Impact of a biorepair treatment on the diversity of calcifying bacterial communities at the surface of cracked concrete walls.	Lors C, Gassie C, Guyoneaud R, Damidot D.	Appl Microbiol Biotechnol	10.1007/s00253-022-12313-2	2023
	Antifungal Activity of Phyllospheric Bacteria Isolated from Coffea arabica against Hemileia vastatrix.	Ogata-Gutierrez K, Chumpitaz-Segovia C, Lirio-Paredes J, Zuniga-Davila D.	Microorganisms	10.3390/microorganisms12030582	2024
	Variation of the seed endophytic bacteria among plant populations and their plant growth-promoting activities in a wild mustard plant species, Capsella bursa-pastoris.	Choi B, Jeong S, Kim E.	Ecol Evol	10.1002/ece3.8683	2022
	The Lipid- and Polysaccharide-Rich Extracellular Polymeric Substances of Rhodococcus Support Biofilm Formation and Protection from Toxic Hydrocarbons.	Krivoruchko A, Nurieva D, Luppov V, Kuyukina M, Ivshina I.	Polymers (Basel)	10.3390/polym17141912	2025
	Draft Genome Sequence of the Actinomycete Rhodococcus sp. Strain AW25M09, Isolated from the Hadsel Fjord, Northern Norway.	Hjerde E, Pierechod MM, Williamson AK, Bjerga GE, Willassen NP, Smalas AO, Altermark B.	Genome Announc	10.1128/genomea.00055-13	2013
	Culturable Bacterial Diversity from the Basaltic Subsurface of the Young Volcanic Island of Surtsey, Iceland.	Bergsten P, Vannier P, Frion J, Mougeolle A, Marteinsson VTh.	Microorganisms	10.3390/microorganisms10061177	2022
Phylogeny	Spatially explicit depiction of a floral epiphytic bacterial community reveals role for environmental filtering within petals.	Hayes RA, Rebolleda-Gomez M, Butela K, Cabo LF, Cullen N, Kaufmann N, O'Neill S, Ashman TL.	Microbiologyopen	10.1002/mbo3.1158	2021
Metabolism	Hydrocarbon-associated substrates reveal promising fungi for poly (ethylene terephthalate) (PET) depolymerization.	Malafatti-Picca L, de Barros Chaves MR, de Castro AM, Valoni E, de Oliveira VM, Marsaioli AJ, de Franceschi de Angelis D, Attili-Angelis D.	Braz J Microbiol	10.1007/s42770-019-00093-3	2019
	Rhizospheric Bacterial Community of Endemic Rhododendron arboreum Sm. Ssp. delavayi along Eastern Himalayan Slope in Tawang.	Debnath R, Yadav A, Gupta VK, Singh BP, Handique PJ, Saikia R.	Front Plant Sci	10.3389/fpls.2016.01345	2016
Phylogeny	Rhodococcus sovatensis sp. nov., an actinomycete isolated from the hypersaline and heliothermal Lake Ursu.	Tancsics A, Mathe I, Benedek T, Toth EM, Atasayar E, Sproer C, Marialigeti K, Felfoldi T, Kriszt B	Int J Syst Evol Microbiol	10.1099/ijsem.0.001514	2017
Phylogeny	Rhodococcus cercidiphylli sp. nov., a new endophytic actinobacterium isolated from a Cercidiphyllum japonicum leaf.	Li J, Zhao GZ, Chen HH, Qin S, Xu LH, Jiang CL, Li WJ	Syst Appl Microbiol	10.1016/j.syapm.2008.03.004	2008

References

#12385	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45141
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Rhodococcus cercidiphylli (DSM 45141, CCTCC AB 207160, YIM 65003)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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