Name: Rhodococcus cercidiphylli DSM 45141
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11049

Type strain:

Species: Rhodococcus cercidiphylli

Culture col. no.: DSM 45141, CCTCC AB 207160, YIM 65003

Strain history: <- S.-K. Tang; YIM 65003 <- J. Li

NCBI tax ID(s): 489916 (species)

SI-ID 400369

DSM 45141

Section

Rhodococcus cercidiphylli DSM 45141 is a mesophilic prokaryote that was isolated from surface sterilized leaf sample of Cercidiphyllum japonicum.

mesophilic
16S sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Genus	*Rhodococcus*
	Species	**Rhodococcus cercidiphylli**
	Full Scientific Name (LPSN)	Rhodococcus cercidiphylli Li et al. 2012

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12385]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #12385]

Culture medium growth

[Ref.: #12385]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12385]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #12385]			growth	28 °C

[Ref.: #12385]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12385]	Sample type/isolated from	surface sterilized leaf sample of Cercidiphyllum japonicum
[Ref.: #12385]	Host species	Cercidiphyllum japonicum
[Ref.: #12385]	Geographic location (country and/or sea, region)	Yunnan
[Ref.: #12385]	Country	China
[Ref.: #12385]	Country ISO 3 Code	CHN
[Ref.: #12385]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Leaf (Phyllosphere)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU325542 (>99% sequence identity) for Rhodococcus fascians from Microbeatlas

Aquatic Samples	1939
Soil Samples	894
Animal Samples	3728
Plant Samples	436
Total Samples	6997

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12385]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12385]	Rhodococcus cercidiphylli strain YIM 65003 16S ribosomal RNA gene, partial sequence	EU325542	1480	ENA	489916 tax ID

[Ref.: #12385]

GC-content

67.2 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #12385]

Culture collection no.

DSM 45141, CCTCC AB 207160, YIM 65003

[Ref.: #80299]

SI-ID 400369

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhodococcus sovatensis sp. nov., an actinomycete isolated from the hypersaline and heliothermal Lake Ursu.	Tancsics A, Mathe I, Benedek T, Toth EM, Atasayar E, Sproer C, Marialigeti K, Felfoldi T, Kriszt B	Int J Syst Evol Microbiol	10.1099/ijsem.0.001514	2017	*
Phylogeny	Rhodococcus cercidiphylli sp. nov., a new endophytic actinobacterium isolated from a Cercidiphyllum japonicum leaf.	Li J, Zhao GZ, Chen HH, Qin S, Xu LH, Jiang CL, Li WJ	Syst Appl Microbiol	10.1016/j.syapm.2008.03.004	2008	*

References

#12385

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45141

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#80299

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400369.1 )

* These data were automatically processed and therefore are not curated

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