Name: Rhodococcus maanshanensis M712
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11031

Type strain:

Species: Rhodococcus maanshanensis

Strain Designation: M712

Culture col. no.: DSM 44675, AS 4.1720, CIP 107806, JCM 11374, BCRC 16384, CGMCC 4.1720, KCTC 9961, NBRC 100610

Strain history: Z. Liu M712.

NCBI tax ID(s): 1219019 (strain), 183556 (species)

Section

Rhodococcus maanshanensis M712 is a mesophilic bacterium that was isolated from soil sample.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Nocardiaceae*
	Genus	*Rhodococcus*
	Species	**Rhodococcus maanshanensis**
	Full Scientific Name (LPSN)	Rhodococcus maanshanensis Zhang et al. 2002

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %93.912

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11972]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #11972]

Culture medium growth

[Ref.: #11972]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11972]

Culture medium composition

expand / minimize

[Ref.: #33168]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #33168]

Culture medium growth

[Ref.: #33168]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #11972]	growth	28 °C
[Ref.: #33168]	growth	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #11972]	Temperature range	mesophilic
[Ref.: #33168]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %98.658

[Ref.: #67770]

Observation

quinones: MK-8(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11972]	Sample type/isolated from	soil sample
[Ref.: #11972]	Geographic location (country and/or sea, region)	Anhui Province, Maanshan Mountain
[Ref.: #11972]	Country	China
[Ref.: #11972]	Country ISO 3 Code	CHN
[Ref.: #11972]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Maanshan Mountain, Anhui Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF410342 (>99% sequence identity) for Rhodococcus from Microbeatlas

Aquatic Samples	421
Soil Samples	2840
Animal Samples	242
Plant Samples	1144
Total Samples	4647

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11972]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #11972]	Rhodococcus maanshanensis 16S ribosomal RNA gene, partial sequence	AF416566	1411	ENA	183556 tax ID
[Ref.: #20218]	Rhodococcus maanshanensis strain DSM 44675 16S ribosomal RNA gene, partial sequence	KF410342	1369	ENA	183556 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rhodococcus maanshanensis NBRC 100610 NBRC 100610	GCA_001894865	contig	GenBank	1219019 tax ID
[Ref.: #67770]	Rhodococcus maanshanensis DSM 44675	GCA_900109405	contig	GenBank	183556 tax ID
[Ref.: #66792]	Rhodococcus maanshanensis NBRC 100610	1219019.3	wgs	PATRIC	1219019 tax ID	*
[Ref.: #66792]	Rhodococcus maanshanensis strain DSM 44675	183556.3	wgs	PATRIC	183556 tax ID	*
[Ref.: #66792]	Rhodococcus maanshanensis DSM 44675	2675903023	draft	JGI IMG/M	183556 tax ID	*

[Ref.: #11972]	GC-content	66.2 mol%
[Ref.: #67770]	GC-content	69.2 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	66.2 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhodococcus maanshanensis strain DSM 44675 PATRIC: 183556.3
[Ref.: #69480]	spore-forming	no	98.658	yes
[Ref.: #69480]	anaerobic	no	99.832	no
[Ref.: #69480]	gram-positive	yes	100	no
[Ref.: #69480]	thermophile	no	99.722	no
[Ref.: #69480]	motile	no	93.912	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhodococcus maanshanensis strain DSM 44675 PATRIC: 183556.3
[Ref.: #69481]	spore-forming	no	63	no

Availability in culture collections External links

[Ref.: #11972]

Culture collection no.

DSM 44675, AS 4.1720, CIP 107806, JCM 11374, BCRC 16384, CGMCC 4.1720, KCTC 9961, NBRC 100610

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhodococcus oryzae sp. nov., a novel actinobacterium isolated from rhizosphere soil of rice (Oryza sativa L.).	Li C, Cao P, Jiang M, Hou Y, Du C, Xiang W, Zhao J, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.004171	2020	*
Phylogeny	Rhodococcus daqingensis sp. nov., isolated from petroleum-contaminated soil.	Wang L, Zhang L, Zhang X, Zhang S, Yang L, Yuan H, Chen J, Liang C, Huang W, Liu J, Zhao Y, Yang Q	Antonie Van Leeuwenhoek	10.1007/s10482-018-1201-y	2018	*
Metabolism	Novel Three-Component Phenazine-1-Carboxylic Acid 1,2-Dioxygenase in Sphingomonas wittichii DP58.	Zhao Q, Hu HB, Wang W, Huang XQ, Zhang XH	Appl Environ Microbiol	10.1128/AEM.00133-17	2017	*
Phylogeny	Rhodococcus maanshanensis sp. nov., a novel actinomycete from soil.	Zhang J, Zhang Y, Xiao C, Liu Z, Goodfellow M	Int J Syst Evol Microbiol	10.1099/00207713-52-6-2121	2002	*

References

#11972

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44675

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#33168 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Rhodococcus maanshanensis strain DSM 44675

Rhodococcus maanshanensis strain DSM 44675

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