Rhodococcus ruber (CCUG 51069, DSM 43338, IFO 15591)

Cell morphology

Colony morphology

Multicellular morphology

Multimedia

• @ref:	10964
  multimedia content:	DSM_43338-1.jpg
  multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_43338-1.jpg
  intellectual property rights:	© Leibniz-Institut DSMZ
  manual_annotation:	1

• @ref:	10964
  multimedia content:	DSM_43338.jpg
  multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_43338.jpg
  caption:	Medium 535 28°C
  intellectual property rights:	© Leibniz-Institut DSMZ
  manual_annotation:	1

Culture medium

@ref	Name	Growth	Medium link	Composition
10964	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
10964	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
19568	ISP 2			Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19568	ISP 3			Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19568	ISP 4			Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19568	ISP 5			Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19568	ISP 6			Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19568	ISP 7			Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
34921	MEDIUM 3 - Columbia agar			Columbia agar (39.000 g);distilled water (1000.000 ml)
122274	CIP Medium 3		Medium recipe at CIP

Culture temp

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
19568	22599 ChEBI	arabinose	-
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
19568	62968 ChEBI	cellulose	-
122274	16947 ChEBI	citrate	-	carbon source
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
122274	4853 ChEBI	esculin	-	hydrolysis
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
19568	28757 ChEBI	fructose	+
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
19568	17234 ChEBI	glucose	+
122274	606565 ChEBI	hippurate	-	hydrolysis
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
19568	29864 ChEBI	mannitol	+
19568	17268 ChEBI	myo-inositol	-
122274	17632 ChEBI	nitrate	+	reduction
122274	17632 ChEBI	nitrate	-	respiration
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
122274	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
19568	16634 ChEBI	raffinose	-
19568	26546 ChEBI	rhamnose	-
19568	17992 ChEBI	sucrose	-
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
19568	18222 ChEBI	xylose	-

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68368	15688 ChEBI	acetoin		from API 20E
68368	16136 ChEBI	hydrogen sulfide		from API 20E
68369	35581 ChEBI	indole		from API 20NE
122274	35581 ChEBI	indole
68368	35581 ChEBI	indole		from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68369	35581 ChEBI	indole		-	from API 20NE
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
122274	alcohol dehydrogenase	-	1.1.1.1
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
122274	amylase	+
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68382	beta-galactosidase	-	3.2.1.23	from API zym
122274	beta-galactosidase	-	3.2.1.23
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
122274	caseinase	-	3.4.21.50
122274	catalase	+	1.11.1.6
122274	DNase	-
122274	gamma-glutamyltransferase	+	2.3.2.2
122274	gelatinase	-
68369	gelatinase	-		from API 20NE
68368	gelatinase	-		from API 20E
122274	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
122274	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
122274	ornithine decarboxylase	-	4.1.1.17
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
122274	oxidase	-
122274	phenylalanine ammonia-lyase	+	4.3.1.24
122274	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
122274	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68368	urease	-	3.5.1.5	from API 20E

API 20E

API zym

API 20NE

API biotype100

Taxonmaps

69479

Global distribution of 16S sequence X80625 (>99% sequence identity) for Rhodococcus from Microbeatlas

Aquatic Samples	725
Soil Samples	1219
Animal Samples	950
Plant Samples	247
Total Samples	3141

Risk assessment

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM189494v1 assembly for Rhodococcus ruber NBRC 15591	contig	GCA_001894945	1219025.3	2814123366	1219025	68.13
67770	ASM164683v1 assembly for Rhodococcus ruber DSM 43338	contig	GCA_001646835	1830.11	2744054618	1830	46.25

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Rhodococcus ruber strain DSM 43338 note copy 1 16S-23S ribosomal RNA intergenic spacer, complete sequence	AF536496	300		1830
20218	Rhodococcus ruber strain DSM 43338 note copy 2 16S-23S ribosomal RNA intergenic spacer, complete sequence	AF536497	298		1830
20218	Rhodococcus ruber strain DSM 43338 16S ribosomal RNA gene, partial sequence	JQ899233	646		1830
20218	Rhodococcus ruber strain DSM 43338 16S ribosomal RNA gene, partial sequence	KF410343	1373		1830
20218	Rhodococcus ruber 16S rRNA gene, strain DSM43338T	X80625	1481		1830
124043	Rhodococcus ruber strain DSM 43338 16S ribosomal RNA gene, partial sequence.	OQ345823	1488		1830
124043	Rhodococcus ruber strain DSM 43338 16S ribosomal RNA gene, partial sequence.	MZ276293	1424		1830
124043	Rhodococcus ruber strain DSM 43338(T) 16S ribosomal RNA gene, partial sequence.	MH298653	710		1830

GC content

Predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Identification of a Phylogenetically Divergent Vanillate O-Demethylase from Rhodococcus ruber R1 Supporting Growth on Meta-Methoxylated Aromatic Acids.	Donoso RA, Corbinaud R, Garate-Castro C, Galaz S, Perez-Pantoja D.	Microorganisms	10.3390/microorganisms11010078	2022
	Cell wall channels of Rhodococcus species: identification and characterization of the cell wall channels of Rhodococcus corynebacteroides and Rhodococcus ruber.	Piselli C, Benier L, Koy C, Glocker MO, Benz R.	Eur Biophys J	10.1007/s00249-022-01599-9	2022
Genetics	Aerobic Degradation Characteristics of Decabromodiphenyl ether through Rhodococcus ruber TAW-CT127 and Its Preliminary Genome Analysis.	Xu H, Cai Q, An Q, Tang C, Wang W, Wang G, You W, Guo D, Zhao R.	Microorganisms	10.3390/microorganisms10071441	2022
	Biodegradation of Di-(2-ethylhexyl) Phthalate by Rhodococcus ruber YC-YT1 in Contaminated Water and Soil.	Yang T, Ren L, Jia Y, Fan S, Wang J, Wang J, Nahurira R, Wang H, Yan Y.	Int J Environ Res Public Health	10.3390/ijerph15050964	2018
	A new strain of Rhodococcus indonesiensis T22.7.1T and its functional potential for deacetylation of chitin and chitooligsaccharides.	Xie J, Yin D, Ou J, Lu B, Liao S, Yang D, Zhang H, Shen N.	Front Microbiol	10.3389/fmicb.2024.1427143	2024
Metabolism	Rhodococcus as A Versatile Biocatalyst in Organic Synthesis.	Busch H, Hagedoorn PL, Hanefeld U.	Int J Mol Sci	10.3390/ijms20194787	2019
	Microbial degradation of steroid sex hormones: implications for environmental and ecological studies.	Chiang YR, Wei ST, Wang PH, Wu PH, Yu CP.	Microb Biotechnol	10.1111/1751-7915.13504	2020
Metabolism	A new Rhodococcus aetherivorans strain isolated from lubricant-contaminated soil as a prospective phenol-biodegrading agent.	Nogina T, Fomina M, Dumanskaya T, Zelena L, Khomenko L, Mikhalovsky S, Podgorskyi V, Gadd GM.	Appl Microbiol Biotechnol	10.1007/s00253-020-10385-6	2020
Metabolism	Bacterial community dynamics during start-up of a trickle-bed bioreactor degrading aromatic compounds.	Stoffels M, Amann R, Ludwig W, Hekmat D, Schleifer KH.	Appl Environ Microbiol	10.1128/aem.64.3.930-939.1998	1998
Pathogenicity	Relationships between colony morphotypes and oil tolerance in Rhodococcus rhodochrous.	Iwabuchi N, Sunairi M, Anzai H, Nakajima M, Harayama S.	Appl Environ Microbiol	10.1128/aem.66.11.5073-5077.2000	2000
Genetics	Complete genome sequence of Rhodococcus ruber SJ-1, a marine bacterium capable of degrading p-chloro-m-xylenol.	Shi J, Xu D, Ma Q.	Microbiol Resour Announc	10.1128/mra.00675-25	2025
	Site-2 protease-like protein drives organic solvent tolerance in Rhodococcus ruber.	Wu J, Wu Z, Peng R.	J Microbiol Methods	10.1016/j.mimet.2025.107204	2025
	Likelihood of polyhydroxyalkanoates production using canola oil cake and specific bacterial isolates for eco-friendly bioplastics.	Joshi S, Debnath M.	Biomater Sci	10.1039/d5bm00787a	2025
	How Rhodococcus ruber accelerated denitrification with soybean-processing wastewater as the electron donor.	Zhang H, Ma Y, Liu F, Chen S, Peng X, Chen F, Zhang Y, Rittmann BE.	J Environ Manage	10.1016/j.jenvman.2025.124558	2025
	How Rhodococcus ruber accelerated biodegradation of benzophenone-3.	Liu F, Ma Y, Li W, Cai J, Zhang H, Chen F, Zhang Y, Rittmann BE.	J Hazard Mater	10.1016/j.jhazmat.2024.136566	2025
Enzymology	Chemoenzymatic synthesis of Tamsulosin.	de Prado E, Mangas-Sanchez J, Gotor-Fernandez V.	Org Biomol Chem	10.1039/d4ob02047b	2025
	Instigation of neurosporaxanthin from Rhodococcus ruber O16N isolated from Gulf of Khambhat.	Thakker JN, Patel K, Dhandhukia P.	Nat Prod Res	10.1080/14786419.2024.2351533	2025
	Enhancing the stress resistance of nitrile hydratase from Rhodococcus ruber via SpyTag/SpyCatcher-mediated alpha- and beta- subunits ligation.	Wang M, Li F, Yu H.	Mol Biol Rep	10.1007/s11033-024-09760-7	2024
Genetics	Physiology and comparative genomics of the haloalkalitolerant and hydrocarbonoclastic marine strain Rhodococcus ruber MSA14.	Embarcadero-Jimenez S, Araujo-Palomares CL, Moreno-Perlin T, Ramirez-Alvarez N, Quezada-Hernandez C, Batista-Garcia RA, Sanchez-Flores A, Calcaneo-Hernandez G, Silva-Jimenez H.	Arch Microbiol	10.1007/s00203-024-04050-z	2024
	The roles of Rhodococcus ruber in denitrification with quinoline as the electron donor.	Tan C, Chen S, Zhang H, Ma Y, Qu Z, Yan N, Zhang Y, Rittmann BE.	Sci Total Environ	10.1016/j.scitotenv.2023.166128	2023
	Assessment of biodegradation and toxicity of alternative plasticizer di(2-ethylhexyl) terephthalate: Impacts on microbial biofilms, metabolism, and reactive oxygen species-mediated stress response.	Mohamed DFMS, Tarafdar A, Lee SY, Oh HB, Kwon JH.	Environ Pollut	10.1016/j.envpol.2024.124217	2024
	Draft genome sequence of propane- and butane-oxidizing Rhodococcus ruber IEGM 333 able to accumulate cesium.	Ivshina I, Kuyukina M, Krivoruchko A.	Microbiol Resour Announc	10.1128/mra.00101-24	2024
Transcriptome	Identification and analysis of VOCs released by Rhodococcus ruber GXMZU2400 to promote plant growth and inhibit pathogen growth.	Lin Z, Wang K, Feng J.	BMC Plant Biol	10.1186/s12870-025-06582-y	2025
	Mitigating the inhibition of antibacterial agent chloroxylenol on nitrification system-The role of Rhodococcus ruber in a bioaugmentation system.	Guo Y, Gao J, Zhao Y, Liu Y, Zhao M, Li Z.	J Hazard Mater	10.1016/j.jhazmat.2023.130758	2023
	Tsrp1 Is a Novel Cyclic Diguanosine Monophosphate Effector that Plays a Role in the Organic-Solvent Tolerance of Rhodococcus ruber.	Zhang F, Yu H, Ai L, Hao Y, Peng R.	J Microbiol Biotechnol	10.4014/jmb.2410.10039	2025
	How Comamonas testosteroni and Rhodococcus ruber enhance nitrification in the presence of quinoline.	Zhu G, Zhang H, Yuan R, Huang M, Liu F, Li M, Zhang Y, Rittmann BE.	Water Res	10.1016/j.watres.2022.119455	2023
Lipids	A stable isotope assay with 13C-labeled polyethylene to investigate plastic mineralization mediated by Rhodococcus ruber.	Goudriaan M, Morales VH, van der Meer MTJ, Mets A, Ndhlovu RT, van Heerwaarden J, Simon S, Heuer VB, Hinrichs KU, Niemann H.	Mar Pollut Bull	10.1016/j.marpolbul.2022.114369	2023
Enzymology	Enhancement of solubility of recombinant alcohol dehydrogenase from Rhodococcus ruber using predictive tool.	Minich A, Sarkanova J, Levarski Z, Stuchlik S.	World J Microbiol Biotechnol	10.1007/s11274-022-03403-4	2022
	Assessing biodegradation of roadway particles via complementary mass spectrometry and NMR analyses.	Calarnou L, Traikia M, Leremboure M, Malosse L, Dronet S, Delort AM, Besse-Hoggan P, Eyheraguibel B.	Sci Total Environ	10.1016/j.scitotenv.2023.165698	2023
	Insights into the degradation of high-density polyethylene microplastics using microbial strains: Effect of process parameters, degradation kinetics and modeling.	Hooda S, Annu, Mondal P.	Waste Manag	10.1016/j.wasman.2023.04.002	2023
	Genomic insights into heterotrophic nitrifying-aerobic denitrifying bacteria from petroleum terminal effluents.	Medina LR, Silva LCF, Lima HS, Vidigal PMP, de Castro AG, de Paula Sousa M, de Souza RS, de Paula SO, da Silva CC.	Heliyon	10.1016/j.heliyon.2024.e39436	2024
Proteome	Insight into the role of a novel c-di-GMP effector protein in Rhodococcus ruber.	Yuan Y, Zhang F, Ai L, Huang Y, Peng R.	Biochem Biophys Res Commun	10.1016/j.bbrc.2022.03.131	2022
Enzymology	Understanding challenges associated with plastic and bacterial approach toward plastic degradation.	Sharma H, Neelam DK.	J Basic Microbiol	10.1002/jobm.202200428	2023
	Combining Photocatalytic Oxidation of beta-Chlorohydrins with Carbonyl Bioreduction in a Deracemization Approach.	Filgueira S, Rodriguez-Fernandez L, Lavandera I, Gotor-Fernandez V.	ChemSusChem	10.1002/cssc.202500683	2025
	Biodegradation of paracetamol by Amycolatopsis sp. Poz 14.	Jan-Roblero J, Alanis-Sanchez BM, Vallejo-Castillo L, Perez-Tapia SM, Cancino-Diaz JC, Cruz-Maya JA.	BMC Res Notes	10.1186/s13104-025-07317-w	2025
Enzymology	Biocatalytic hydrogen-transfer to access enantiomerically pure proxyphylline, xanthinol, and diprophylline.	Borowiecki P, Rudzka A, Reiter T, Kroutil W.	Bioorg Chem	10.1016/j.bioorg.2022.105967	2022
	Characterization and biodegradability assessment of water-soluble fraction of oily sludge using stir bar sorptive extraction and GCxGC-TOF MS.	Chand P, Dutta S, Mukherji S.	Environ Pollut	10.1016/j.envpol.2022.119177	2022
Enzymology	Expression, Rapid Purification and Functional Analysis of DnaK from Rhodococcus ruber.	Fan X, Yuan Y, Zhang F, Ai L, Wu Z, Peng R.	Protein Pept Lett	10.2174/0929866528666210301150421	2021
	Changes in Fluorescence of Aquatic Dissolved Organic Matter Induced by Plastic Debris.	Popa CL, Dontu SI, Savastru D, Carstea EM.	Materials (Basel)	10.3390/ma18071602	2025
	Stereoselective synthesis of whisky lactone isomers catalyzed by bacteria in the genus Rhodococcus.	Hernik D, Gatti F, Brenna E, Szczepanska E, Olejniczak T, Boratynski F.	Front Microbiol	10.3389/fmicb.2023.1117835	2023
Metabolism	The moonlighting activities of dihydrolipoamide dehydrogenase: Biotechnological and biomedical applications.	Fleminger G, Dayan A.	J Mol Recognit	10.1002/jmr.2924	2021
	Bioballs carrying a syntrophic Rhodococcus and Mycolicibacterium consortium for simultaneous sorption and biodegradation of fuel oil in contaminated freshwater.	Naloka K, Polrit D, Muangchinda C, Thoetkiattikul H, Pinyakong O.	Chemosphere	10.1016/j.chemosphere.2021.130973	2021
Phylogeny	Thiamine-Mediated Microbial Interaction between Auxotrophic Rhodococcus ruber ZM07 and Prototrophic Cooperators in the Tetrahydrofuran-Degrading Microbial Community H-1.	Huang H, Wu H, Qi M, Wang H, Lu Z.	Microbiol Spectr	10.1128/spectrum.04541-22	2023
	Biodegradation of the methylenedioxyphenyl group in piperine and its derivatives: discovery of a novel methylenetransferase in an actinomycete.	Jian P, Kumano T, Kimura M, Kurisaki M, Hashimoto Y, Kobayashi M.	Appl Environ Microbiol	10.1128/aem.01145-23	2023
	The comparative plastisphere microbial community profile at Kung Wiman beach unveils potential plastic-specific degrading microorganisms.	Chaimusik N, Sombuttra N, Nakaramontri Y, Sompongchaiyakul P, Charoenpong C, Intra B, Euanorasetr J.	PeerJ	10.7717/peerj.17165	2024
	Synergy of strains that accelerate biodegradation of pyridine and quinoline.	Zhu G, Xing F, Tao J, Chen S, Li K, Cao L, Yan N, Zhang Y, Rittmann BE.	J Environ Manage	10.1016/j.jenvman.2021.112119	2021
Enzymology	Rational design of deep eutectic solvents for the stabilization of dehydrogenases: an artificial neural network prediction approach.	Radovic M, Jurinjak Tusek A, Reiter T, Kroutil W, Cvjetko Bubalo M, Radojcic Redovnikovic I.	Front Chem	10.3389/fchem.2024.1436049	2024
Enzymology	Expression, purification and characterization of diguanylate cyclase from Rhodococcus ruber.	Kuang S, Yuan Y, Wu Z, Peng R.	Protein Expr Purif	10.1016/j.pep.2019.06.001	2019
	Formation and use of anaerobic consortia for the biotransformation of sulfur-containing extracts from pre-oxidized crude oil and oil fractions.	Maslova O, Senko O, Stepanov N, Gladchenko M, Gaydamaka S, Akopyan A, Polikarpova P, Lysenko S, Anisimov A, Efremenko E.	Bioresour Technol	10.1016/j.biortech.2020.124248	2021
Metabolism	Examining aerobic degradation of chloroethenes mixture in consortium composed of Comamonas testosteroni RF2 and Mycobacterium aurum L1.	Zalesak M, Ruzicka J, Vicha R, Dvorackova M.	Chemosphere	10.1016/j.chemosphere.2020.128770	2021
Genetics	Characteristics and Mechanisms of Simultaneous Quinoline and Ammonium Nitrogen Removal by a Robust Bacterium Pseudomonas stutzeri H3.	Hu J, Xu B, Yan J, Fan G.	Microorganisms	10.3390/microorganisms13030687	2025
	Screening of a New Kosakonia Species for Polyethylene Biodegradation.	Cho JH, Yun SD, Kim HW, Seo MJ, Sung BH, Yeom SJ.	J Microbiol Biotechnol	10.4014/jmb.2411.11058	2025
Metabolism	A CRISPR/Cas9-based genome editing system for Rhodococcus ruber TH.	Liang Y, Jiao S, Wang M, Yu H, Shen Z.	Metab Eng	10.1016/j.ymben.2019.10.003	2020
	Biosphere Plastic Contamination and Microbial Alternatives for a Sustainable Degradation of Plastic Waste.	Baez-Flores ME, Tiznado-Hernandez ME, Gracia-Valenzuela MH, Troncoso-Rojas R.	Microorganisms	10.3390/microorganisms13061246	2025
Enzymology	A Peroxygenase-Alcohol Dehydrogenase Cascade Reaction to Transform Ethylbenzene Derivatives into Enantioenriched Phenylethanols.	Xu X, Brasselet H, Jongkind EPJ, Alcalde M, Paul CE, Hollmann F.	Chembiochem	10.1002/cbic.202200017	2022
	Remediation Approaches to Reduce Hydrocarbon Contamination in Petroleum-Polluted Soil.	Elgazali A, Althalb H, Elmusrati I, Ahmed HM, Banat IM.	Microorganisms	10.3390/microorganisms11102577	2023
	Renal pelvis urobiome dysbiosis is associated with postoperative systemic inflammatory response syndrome after percutaneous nephrolithotomy.	Wang Q, Chen X, Deng G, Huang K, Hong S, Jiang K.	mSystems	10.1128/msystems.00780-25	2025
Metabolism	Improving stress tolerance and cell integrity of Rhodococcus ruber by overexpressing small-shock-protein Hsp16 of Rhodococcus.	Wang M, Chen J, Yu H, Shen Z.	J Ind Microbiol Biotechnol	10.1007/s10295-018-2066-9	2018
Pathogenicity	Adhesion of Rhodococcus ruber IEGM 342 to polystyrene studied using contact and non-contact temperature measurement techniques.	Krivoruchko AV, Iziumova AY, Kuyukina MS, Plekhov OA, Naimark OB, Ivshina IB.	Appl Microbiol Biotechnol	10.1007/s00253-018-9297-6	2018
Enzymology	Resistant Rhodococcus for Biodegradation of Diesel Fuel at High Concentration and Low Temperature.	Ivshina I, Kuyukina M, Krivoruchko A, Elkin A, Peshkur T, Cunningham CJ.	Microorganisms	10.3390/microorganisms12122605	2024
	Flavin-mediated extracellular electron transfer in Gram-positive bacteria Bacillus cereus DIF1 and Rhodococcus ruber DIF2.	Tian T, Fan X, Feng M, Su L, Zhang W, Chi H, Fu D.	RSC Adv	10.1039/c9ra08045g	2019
Metabolism	Highly chemoselective and efficient production of 2,6-difluorobenzamide using Rhodococcus ruber CGMCC3090 resting cells.	Tang R, Shen Y, Wang M, Zhai Y, Gao Q.	J Biosci Bioeng	10.1016/j.jbiosc.2017.07.001	2017
	Studying NAD(P)H cofactor-binding to alcohol dehydrogenases through global analysis of circular dichroism spectra.	Marolt M, Ludeke S.	Phys Chem Chem Phys	10.1039/c8cp04869j	2019
	Biocompatible metal-assisted C-C cross-coupling combined with biocatalytic chiral reductions in a concurrent tandem cascade.	Schaaf P, Bayer T, Koley M, Schnurch M, Bornscheuer UT, Rudroff F, Mihovilovic MD.	Chem Commun (Camb)	10.1039/c8cc05304a	2018
Phylogeny	Data on the characterization of phthalate-degrading bacteria from Asian carp microbiomes and riverine sediments.	Kolb SA, O'Loughlin EJ, Gsell TC.	Data Brief	10.1016/j.dib.2019.104375	2019
	Evaluation of the Deterioration of Untreated Commercial Polystyrene by Psychrotrophic Antarctic Bacterium.	Tang PM, Habib S, Shukor MYA, Alias SA, Smykla J, Yasid NA.	Polymers (Basel)	10.3390/polym15081841	2023
Metabolism	Tuning and elucidation of the colony dimorphism in Rhodococcus ruber associated with cell flocculation in large scale fermentation.	Jiao S, Chen J, Yu H, Shen Z.	Appl Microbiol Biotechnol	10.1007/s00253-017-8319-0	2017
	Effects of Nickel Nanoparticles on Rhodococcus Cell Surface Morphology and Nanomechanical Properties.	Kuyukina MS, Glebov GG, Ivshina IB.	Nanomaterials (Basel)	10.3390/nano12060951	2022
	Physiological changes in Rhodococcus ruber S103 immobilized on biobooms using low-cost media enhance stress tolerance and crude oil-degrading activity.	Naloka K, Jaroonrunganan J, Woratecha N, Khondee N, Nojiri H, Pinyakong O.	Sci Rep	10.1038/s41598-022-14488-0	2022
Enzymology	Recombinant Enzymatic Redox Systems for Preparation of Aroma Compounds by Biotransformation.	Varga V, Stefuca V, Mihalova L, Levarski Z, Struharnanska E, Blasko J, Kubinec R, Farkas P, Sitkey V, Turna J, Rosenberg M, Stuchlik S.	Front Microbiol	10.3389/fmicb.2021.684640	2021
	Intratumor Rhodococcus sp. B513 drives DEN-induced hepatocellular carcinoma progression by modulating gut microbiota and angiogenesis.	Liu Q, Wang J, Yao Y, Sun X, Fang W, Zhang Y, Liu Z, Zheng Y.	Curr Res Microb Sci	10.1016/j.crmicr.2025.100428	2025
	Further Studies on the 3-Ketosteroid 9alpha-Hydroxylase of Rhodococcus ruber Chol-4, a Rieske Oxygenase of the Steroid Degradation Pathway.	Baldanta S, Navarro Llorens JM, Guevara G.	Microorganisms	10.3390/microorganisms9061171	2021
Phylogeny	Characterization of the soil resistome and mobilome in Namib Desert soils.	Naidoo Y, Pierneef RE, Cowan DA, Valverde A.	Int Microbiol	10.1007/s10123-023-00454-x	2024
Enzymology	Generation of novel family of reductases from PCR based library for the synthesis of chiral alcohols and amines.	Sehajpal P, Kirar S, Ghosh S, Banerjee UC.	Enzyme Microb Technol	10.1016/j.enzmictec.2018.07.006	2018
Metabolism	Microbial Community Analysis Provides Insights into the Effects of Tetrahydrofuran on 1,4-Dioxane Biodegradation.	Xiong Y, Mason OU, Lowe A, Zhou C, Chen G, Tang Y.	Appl Environ Microbiol	10.1128/aem.00244-19	2019
Enzymology	Development of a Pre-Modification Strategy to Overcome Restriction-Modification Barriers and Enhance Genetic Engineering in Lactococcus lactis for Nisin Biosynthesis.	Chen C, Zhang Y, Chen R, Liu K, Wu H, Qiao J, Caiyin Q.	Int J Mol Sci	10.3390/ijms26052200	2025
	Thiamine-Mediated Cooperation Between Auxotrophic Rhodococcus ruber ZM07 and Escherichia coli K12 Drives Efficient Tetrahydrofuran Degradation.	Huang H, Qi M, Liu Y, Wang H, Wang X, Qiu Y, Lu Z.	Front Microbiol	10.3389/fmicb.2020.594052	2020
Metabolism	Transcriptomics and Lipidomics of the Environmental Strain Rhodococcus ruber Point out Consumption Pathways and Potential Metabolic Bottlenecks for Polyethylene Degradation.	Gravouil K, Ferru-Clement R, Colas S, Helye R, Kadri L, Bourdeau L, Moumen B, Mercier A, Ferreira T.	Environ Sci Technol	10.1021/acs.est.7b00846	2017
	Chemo-enzymatic synthesis and biological activity evaluation of propenylbenzene derivatives.	Hernik D, Szczepanska E, Ghezzi MC, Brenna E, Wloch A, Pruchnik H, Mularczyk M, Marycz K, Olejniczak T, Boratynski F.	Front Microbiol	10.3389/fmicb.2023.1223123	2023
Enzymology	Ammonium acrylate biomanufacturing by an engineered Rhodococcus ruber with nitrilase overexpression and double-knockout of nitrile hydratase and amidase.	Sun J, Yu H, Chen J, Luo H, Shen Z.	J Ind Microbiol Biotechnol	10.1007/s10295-016-1840-9	2016
	Harnessing and Degradation Mechanism of Persistent Polyethylene Waste by Newly Isolated Bacteria from Waxworm and Termite Gut Symbionts	Ali S, Sun J, Al-Tohamy R, Khalil M, Elsamahy T, Schagerl M, Zhu D, El-Sapagh S.	Microorganisms		2025
Genetics	Improved reference quality genome sequence of the plastic-degrading greater wax moth, Galleria mellonella.	Young R, Ahmed KA, Court L, Castro-Vargas C, Marcora A, Boctor J, Paull C, Wijffels G, Rane R, Edwards O, Walsh T, Pandey G.	G3 (Bethesda)	10.1093/g3journal/jkae070	2024
Enzymology	An ADH toolbox for raspberry ketone production from natural resources via a biocatalytic cascade.	Becker A, Bottcher D, Katzer W, Siems K, Muller-Kuhrt L, Bornscheuer UT.	Appl Microbiol Biotechnol	10.1007/s00253-021-11332-9	2021
	Deciphering the phenol degradation metabolic pathway in Scedosporium apiospermum HDO1.	Diaz Ortiz LL, Botero-Rozo D, Vargas N, Ortiz S, Restrepo S, Vives MJ.	Appl Environ Microbiol	10.1128/aem.01038-25	2025
Enzymology	Overproduction of the Escherichia coli Chaperones GroEL-GroES in Rhodococcus ruber Improves the Activity and Stability of Cell Catalysts Harboring a Nitrile Hydratase.	Tian Y, Chen J, Yu H, Shen Z.	J Microbiol Biotechnol	10.4014/jmb.1509.09084	2016
Metabolism	Bioremediation of PCB-contaminated shallow river sediments: The efficacy of biodegradation using individual bacterial strains and their consortia.	Horvathova H, Laszlova K, Dercova K.	Chemosphere	10.1016/j.chemosphere.2017.11.012	2018
	Artificially sporulated Escherichia coli cells as a robust cell factory for interfacial biocatalysis.	Sun Z, Hubner R, Li J, Wu C.	Nat Commun	10.1038/s41467-022-30915-2	2022
	Soil Microbiome in Conditions of Oil Pollution of Subarctic Ecosystems.	Melekhina EN, Belykh ES, Kanev VA, Taskaeva AA, Tarabukin DV, Zinovyeva AN, Velegzhaninov IO, Rasova EE, Baturina OA, Kabilov MR, Markarova MY.	Microorganisms	10.3390/microorganisms12010080	2023
Metabolism	Biodegradation and chemotaxis of polychlorinated biphenyls, biphenyls, and their metabolites by Rhodococcus spp.	Wang H, Hu J, Xu K, Tang X, Xu X, Shen C.	Biodegradation	10.1007/s10532-017-9809-6	2018
Enzymology	Removal of polycyclic aromatic hydrocarbons in soil spiked with model mixtures of petroleum hydrocarbons and heterocycles using biosurfactants from Rhodococcus ruber IEGM 231.	Ivshina I, Kostina L, Krivoruchko A, Kuyukina M, Peshkur T, Anderson P, Cunningham C.	J Hazard Mater	10.1016/j.jhazmat.2016.03.007	2016
	Chromoselective Photocatalysis Enables Stereocomplementary Biocatalytic Pathways.	Schmermund L, Reischauer S, Bierbaumer S, Winkler CK, Diaz-Rodriguez A, Edwards LJ, Kara S, Mielke T, Cartwright J, Grogan G, Pieber B, Kroutil W.	Angew Chem Weinheim Bergstr Ger	10.1002/ange.202100164	2021
	Chromoselective Photocatalysis Enables Stereocomplementary Biocatalytic Pathways*.	Schmermund L, Reischauer S, Bierbaumer S, Winkler CK, Diaz-Rodriguez A, Edwards LJ, Kara S, Mielke T, Cartwright J, Grogan G, Pieber B, Kroutil W.	Angew Chem Int Ed Engl	10.1002/anie.202100164	2021
Metabolism	Bioconversion of alkaloids to high-value chemicals: Comparative analysis of newly isolated lupanine degrading strains.	Parmaki S, Vyrides I, Vasquez MI, Hartman V, Zacharia I, Hadjiadamou I, Barbeitos CBM, Ferreira FC, Afonso CAM, Drouza C, Koutinas M.	Chemosphere	10.1016/j.chemosphere.2017.10.165	2018
Enzymology	Mechanistic Insight into the Enantioselective Degradation of Esterase QeH to (R)/(S)-Quizalofop-Ethyl with Molecular Dynamics Simulation Using a Residue-Specific Force Field.	Zhu YM, Yao G, Shao S, Liu XY, Xu J, Chen C, Zhang XW, Huang ZR, Xu CZ, Zhang L, Wu XM.	Int J Mol Sci	10.3390/ijms25189964	2024
	Biodegradation Potential of Polyethylene Terephthalate by the Two Insect Gut Symbionts Xanthomonas sp. HY-74 and Bacillus sp. HY-75.	Kim JH, Lee SH, Lee BM, Son KH, Park HY.	Polymers (Basel)	10.3390/polym15173546	2023
Enzymology	The involvement of coordinative interactions in the binding of dihydrolipoamide dehydrogenase to titanium dioxide-Localization of a putative binding site.	Dayan A, Babin G, Ganoth A, Kayouf NS, Nitoker Eliaz N, Mukkala S, Tsfadia Y, Fleminger G.	J Mol Recognit	10.1002/jmr.2617	2017
	Antibiotic's target site affects the potentiation of Lactiplantibacillus plantarum inhibition and inactivation by electroporation.	Lovsin Z, Kotnik T, Klancnik A.	Front Microbiol	10.3389/fmicb.2024.1331714	2024
Metabolism	Drotaverine hydrochloride degradation using cyst-like dormant cells of Rhodococcus ruber.	Ivshina IB, Mukhutdinova AN, Tyumina HA, Vikhareva HV, Suzina NE, El'-Registan GI, Mulyukin AL.	Curr Microbiol	10.1007/s00284-014-0718-1	2015
Metabolism	Biodegradation of high concentrations of mixed polycyclic aromatic hydrocarbons by indigenous bacteria from a river sediment: a microcosm study and bacterial community analysis.	Muangchinda C, Yamazoe A, Polrit D, Thoetkiattikul H, Mhuantong W, Champreda V, Pinyakong O.	Environ Sci Pollut Res Int	10.1007/s11356-016-8185-9	2017
Metabolism	Individual or synchronous biodegradation of di-n-butyl phthalate and phenol by Rhodococcus ruber strain DP-2.	He Z, Niu C, Lu Z.	J Hazard Mater	10.1016/j.jhazmat.2014.03.033	2014
	Hemin-binding DNA structures on the surface of bacteria promote extracellular electron transfer.	Ajunwa OM, Minero GAS, Jensen SD, Meyer RL.	Nucleic Acids Res	10.1093/nar/gkaf790	2025
	Preparation of Hybrid Sol-Gel Materials Based on Living Cells of Microorganisms and Their Application in Nanotechnology.	Kamanina OA, Saverina EA, Rybochkin PV, Arlyapov VA, Vereshchagin AN, Ananikov VP.	Nanomaterials (Basel)	10.3390/nano12071086	2022
Metabolism	Chemoenzymatic Asymmetric Synthesis of Pyridine-Based alpha-Fluorinated Secondary Alcohols.	Broese T, Ehlers P, Langer P, von Langermann J.	Chembiochem	10.1002/cbic.202100392	2021
	Degradation mechanisms of DDX induced by the addition of toluene and glycerol as cosubstrates in a zero-valent iron pretreated soil.	Velasco A, Aburto-Medina A, Shahsavari E, Revah S, Ortiz I.	J Hazard Mater	10.1016/j.jhazmat.2016.09.047	2017
	In vitro nematicidal and acaricidal effect of biosurfactants produced by Bacillus against the root-knot nematode Nacobbus aberrans and the dust mite Tyrophagus putrescentiae.	Gomez-Gutierrez JA, Wong-Villarreal A, Aguilar-Marcelino L, Yanez-Ocampo G, Hernandez-Nunez E, Caspeta-Mandujano JM, Garcia-Flores A, Cruz-Arevalo J, Vargas-Uriostegui P, Gomez-Rodriguez O.	Braz J Microbiol	10.1007/s42770-023-00981-9	2023
Metabolism	Metabolic engineering of Rhodococcus ruber Chol-4: A cell factory for testosterone production.	Guevara G, Olortegui Flores Y, Fernandez de Las Heras L, Perera J, Navarro Llorens JM.	PLoS One	10.1371/journal.pone.0220492	2019
	Enhancement of low-density polyethylene biodegradation through the production of surface-active compounds by Pluralibacter gergoviae TYB1.	Soni N, Kumarasamy V, Gupta P, Singh SDK, Kamaraj C, Subramaniyan V, Selvan ST, Velu RK, Velramar B.	Sci Rep	10.1038/s41598-025-04163-5	2025
	Asymmetric alpha-benzylation of cyclic ketones enabled by concurrent chemical aldol condensation and biocatalytic reduction.	Liu Y, Ma T, Guo Z, Zhou L, Liu G, He Y, Ma L, Gao J, Bai J, Hollmann F, Jiang Y.	Nat Commun	10.1038/s41467-023-44452-z	2024
	Innovative Microbial Immobilization Strategy for Di-n-Butyl Phthalate Biodegradation Using Biochar-Calcium Alginate-Waterborne Polyurethane Composites.	Cao XD, Jien SH, Yang CW, Lin YH, Liao CS.	Microorganisms	10.3390/microorganisms12071265	2024
Genetics	New insights into the genome of Rhodococcus ruber strain Chol-4.	Guevara G, Castillo Lopez M, Alonso S, Perera J, Navarro-Llorens JM.	BMC Genomics	10.1186/s12864-019-5677-2	2019
	Identification of a novel thermostable transaminase and its application in L-phosphinothricin biosynthesis.	Liu HL, Yi PH, Wu JM, Cheng F, Liu ZQ, Jin LQ, Xue YP, Zheng YG.	Appl Microbiol Biotechnol	10.1007/s00253-024-13023-7	2024
Phylogeny	Enriched microbial consortia from natural environments reveal core groups of microbial taxa able to degrade terephthalate and terphthalamide.	Schaerer LG, Aloba S, Wood E, Olson AM, Valencia IB, Ong RG, Techtmann SM.	PLoS One	10.1371/journal.pone.0315432	2024
	Identification of the chaA and fwA Spore Color Genes of Aspergillus nidulans.	Oakley CE, Barton TS, Oakley BR.	J Fungi (Basel)	10.3390/jof10020104	2024
	Draft Genome Sequence of Propane- and Butane-Oxidizing Actinobacterium Rhodococcus ruber IEGM 231.	Ivshina IB, Kuyukina MS, Krivoruchko AV, Barbe V, Fischer C.	Genome Announc	10.1128/genomea.01297-14	2014
Pathogenicity	Strategies to increase the robustness of microbial cell factories.	Xu P, Lin NQ, Zhang ZQ, Liu JZ.	Adv Biotechnol (Singap)	10.1007/s44307-024-00018-8	2024
Pathogenicity	Effect of glycolipid Rhodococcus biosurfactant on secretory activity of neutrophils in vitro.	Baeva TA, Gein SV, Kuyukina MS, Ivshina IB, Kochina OA, Chereshnev VA.	Bull Exp Biol Med	10.1007/s10517-014-2534-9	2014
Metabolism	Biosurfactant-enhanced immobilization of hydrocarbon-oxidizing Rhodococcus ruber on sawdust.	Ivshina IB, Kuyukina MS, Krivoruchko AV, Plekhov OA, Naimark OB, Podorozhko EA, Lozinsky VI.	Appl Microbiol Biotechnol	10.1007/s00253-013-4869-y	2013
	Chemoenzymatic asymmetric synthesis of 1,4-benzoxazine derivatives: application in the synthesis of a levofloxacin precursor.	Lopez-Iglesias M, Busto E, Gotor V, Gotor-Fernandez V.	J Org Chem	10.1021/acs.joc.5b00056	2015
Metabolism	[Adaptation of coimmobilized Rhodococcus cells to oil hydrocarbons in a column bioreactor].	Serebrennikova MK, Kuiukina MS, Krivoruchko AV, Ivshina IB.	Prikl Biokhim Mikrobiol	10.1134/s0003683814030144	2014
Metabolism	Novel Chaperones RrGroEL and RrGroES for Activity and Stability Enhancement of Nitrilase in Escherichia coli and Rhodococcus ruber.	Xu C, Tang L, Liang Y, Jiao S, Yu H, Luo H.	Molecules	10.3390/molecules25041002	2020
Metabolism	Molecular insights into substrate specificity of Rhodococcus ruber CGMCC3090 by gene cloning and homology modeling.	Wang S, Dai Y, Wang J, Shen Y, Zhai Y, Zheng H, Wang M.	Enzyme Microb Technol	10.1016/j.enzmictec.2012.11.004	2013
	Biodegradation of low, medium and high molecular weight phthalate by Gordonia sp. in a batch system: Kinetics and phytotoxicity analyses.	Kumar Kanaujiya D, More A, Kumar Chhantyal A, Karn R, Pakshirajan K.	Bioengineered	10.1080/21655979.2023.2229094	2023
	Streptomyces uses both polar and dispersed cell wall synthesis during exploratory growth.	Zambri MP, Baglio CR, Irazoki O, Jones SE, Garner EC, Cava F, Elliot MA.	Nat Microbiol	10.1038/s41564-025-02080-x	2025
	Review and future outlook for the removal of microplastics by physical, biological and chemical methods in water bodies and wastewaters.	Amparan MAA, Palacios A, Flores GM, Olivera PMC.	Environ Monit Assess	10.1007/s10661-025-13883-0	2025
	"Universal" Antimicrobial Combination of Bacitracin and His6-OPH with Lactonase Activity, Acting against Various Bacterial and Yeast Cells.	Aslanli A, Domnin M, Stepanov N, Efremenko E.	Int J Mol Sci	10.3390/ijms23169400	2022
Enzymology	Production of a thermostable alcohol dehydrogenase from Rhodococcus ruber in three different yeast species using the Xplor®2 transformation/expression platform.	Giersberg M, Degelmann A, Bode R, Piontek M, Kunze G.	J Ind Microbiol Biotechnol	10.1007/s10295-012-1134-9	2012
	A conserved human CD4+ T cell subset recognizing the mycobacterial adjuvant trehalose monomycolate.	Sakai Y, Asa M, Hirose M, Kusuhara W, Fujiwara N, Tamashima H, Ikazaki T, Oka S, Kuraba K, Tanaka K, Yoshiyama T, Nagae M, Hoshino Y, Motooka D, Van Rhijn I, Lu X, Ishikawa E, Moody DB, Kato T, Inuki S, Hirai G, Yamasaki S.	J Clin Invest	10.1172/jci185443	2024
Metabolism	Synthesis of enantiopure fluorohydrins using alcohol dehydrogenases at high substrate concentrations.	Borzecka W, Lavandera I, Gotor V.	J Org Chem	10.1021/jo400962c	2013
	Optimization of Polystyrene Biodegradation by Bacillus cereus and Pseudomonas alcaligenes Using Full Factorial Design.	Miloloza M, Ukic S, Cvetnic M, Bolanca T, Kucic Grgic D.	Polymers (Basel)	10.3390/polym14204299	2022
Genetics	Insights into polyethylene biodegradative fingerprint of Pseudomonas citronellolis E5 and Rhodococcus erythropolis D4 by phenotypic and genome-based comparative analyses.	Zampolli J, Collina E, Lasagni M, Di Gennaro P.	Front Bioeng Biotechnol	10.3389/fbioe.2024.1472309	2024
	Microbial Lipopeptide-Producing Strains and Their Metabolic Roles under Anaerobic Conditions.	Li JY, Wang L, Liu YF, Zhou L, Gang HZ, Liu JF, Yang SZ, Mu BZ.	Microorganisms	10.3390/microorganisms9102030	2021
	Screening of Polyethylene-Degrading Bacteria from Rhyzopertha Dominica and Evaluation of Its Key Enzymes Degrading Polyethylene.	Zhang Y, Lin Y, Gou H, Feng X, Zhang X, Yang L.	Polymers (Basel)	10.3390/polym14235127	2022
	Metatranscriptomics of microbial biofilm succession on HDPE foil: uncovering plastic-degrading potential in soil communities.	MacLean J, Bartholomaus A, Blukis R, Liebner S, Wagner D.	Environ Microbiome	10.1186/s40793-024-00621-1	2024
	C=C-Ene-Reductases Reduce the C=N Bond of Oximes.	Velikogne S, Breukelaar WB, Hamm F, Glabonjat RA, Kroutil W.	ACS Catal	10.1021/acscatal.0c03755	2020
Metabolism	Biological activity and mechanical stability of sol-gel-based biofilters using the freeze-gelation technique for immobilization of Rhodococcus ruber.	Pannier A, Mkandawire M, Soltmann U, Pompe W, Bottcher H.	Appl Microbiol Biotechnol	10.1007/s00253-011-3489-7	2012
Biotechnology	Marine-Derived Actinomycetes: Biodegradation of Plastics and Formation of PHA Bioplastics-A Circular Bioeconomy Approach.	Oliveira J, Almeida PL, Sobral RG, Lourenco ND, Gaudencio SP.	Mar Drugs	10.3390/md20120760	2022
Metabolism	PAH bioremediation with Rhodococcus rhodochrous ATCC 21198: Impact of cell immobilization and surfactant use on PAH treatment and post-remediation toxicity.	Huizenga JM, Schindler J, Simonich MT, Truong L, Garcia-Jaramillo M, Tanguay RL, Semprini L.	J Hazard Mater	10.1016/j.jhazmat.2024.134109	2024
Metabolism	Bioconversion of acrylonitrile to acrylic acid by rhodococcus ruber strain AKSH-84.	Kamal A, Kumar MS, Kumar CG, Shaik T.	J Microbiol Biotechnol	10.4014/jmb.1006.06044	2011
Genetics	Changes in Intestinal Microbiota Due to the Expanded Polystyrene Diet of Mealworms (Tenebrio molitor).	Bae J, Cho HW, Jung H, Park J, Yun S, Ha S, Lee Y, Kim TJ.	Indian J Microbiol	10.1007/s12088-021-00922-w	2021
Metabolism	Isolation of an aryloxyphenoxy propanoate (AOPP) herbicide-degrading strain Rhodococcus ruber JPL-2 and the cloning of a novel carboxylesterase gene (feh).	Hongming L, Xu L, Zhaojian G, Fan Y, Dingbin C, Jianchun Z, Jianhong X, Shunpeng L, Qing H.	Braz J Microbiol	10.1590/s1517-838246220140208	2015
Enzymology	Structural insights into substrate specificity and solvent tolerance in alcohol dehydrogenase ADH-'A' from Rhodococcus ruber DSM 44541.	Karabec M, Lyskowski A, Tauber KC, Steinkellner G, Kroutil W, Grogan G, Gruber K.	Chem Commun (Camb)	10.1039/c0cc00929f	2010
	Lactobacillus plantarum Generate Electricity through Flavin Mononucleotide-Mediated Extracellular Electron Transfer to Upregulate Epithelial Type I Collagen Expression and Thereby Promote Microbial Adhesion to Intestine.	Ganzorig B, Zayabaatar E, Pham MT, Marito S, Huang CM, Lee YH.	Biomedicines	10.3390/biomedicines11030677	2023
Metabolism	Features of diclofenac biodegradation by Rhodococcus ruber IEGM 346.	Ivshina IB, Tyumina EA, Kuzmina MV, Vikhareva EV.	Sci Rep	10.1038/s41598-019-45732-9	2019
Phylogeny	Simultaneous species-specific PCR detection and viability testing of poly(vinyl alcohol) cryogel-entrapped Rhodococcus spp. after their exposure to petroleum hydrocarbons.	Kuyukina MS, Ivshina IB, Serebrennikova MK, Rubtsova EV, Krivoruchko AV.	J Microbiol Methods	10.1016/j.mimet.2013.05.016	2013
Genetics	Interspecies synergistic interactions mediated by cofactor exchange enhance stress tolerance by inducing biofilm formation.	Wang L, Wang X, Wu H, Wang H, Lu Z.	mSystems	10.1128/msystems.00884-24	2024
Phylogeny	Isolation and characterization of novel hydrocarbon-degrading bacteria from oil polluted soil near Nacharam, Hyderabad, India.	Zaman SAU, Bhrdwaj A, Nayarisseri A, Khazanehdari KA, Bhuyan R.	Sci Rep	10.1038/s41598-025-01081-4	2025
	Characterization and Biological Activities of Four Biotransformation Products of Diosgenin from Rhodococcus erythropolis.	Li Y, Zhang C, Kong K, Yan X.	Molecules	10.3390/molecules28073093	2023
	Polyethylene Degradation by a Rhodococcous Strain Isolated from Naturally Weathered Plastic Waste Enrichment.	Tao X, Ouyang H, Zhou A, Wang D, Matlock H, Morgan JS, Ren AT, Mu D, Pan C, Zhu X, Han A, Zhou J.	Environ Sci Technol	10.1021/acs.est.3c03778	2023
	Functionalized Ionic Liquids for CO2 Capture under Ambient Pressure.	Zhao H, Baker GA.	Green Chem Lett Rev	10.1080/17518253.2022.2149280	2023
	High Regioselectivity Production of 5-Cyanovaleramide from Adiponitrile by a Novel Nitrile Hydratase Derived from Rhodococcus erythropolis CCM2595.	Wang L, Liu S, Du W, Dou T, Liang C.	ACS Omega	10.1021/acsomega.0c02188	2020
	Monoterpene Enrichments Have Positive Impacts on Soil Bacterial Communities and the Potential of Application in Bioremediation.	Chalkos D, Karamanoli K, Vokou D.	Plants (Basel)	10.3390/plants10112536	2021
	Electroporation as an Efficacy Potentiator for Antibiotics With Different Target Sites.	Lovsin Z, Klancnik A, Kotnik T.	Front Microbiol	10.3389/fmicb.2021.722232	2021
Metabolism	OrtSuite: from genomes to prediction of microbial interactions within targeted ecosystem processes.	Saraiva JP, Bartholomaus A, Kallies R, Gomes M, Bicalho M, Coelho Kasmanas J, Vogt C, Chatzinotas A, Stadler P, Dias O, Nunes da Rocha U.	Life Sci Alliance	10.26508/lsa.202101167	2021
Metabolism	Identification of nitrile hydratase-producing Rhodococcus ruber TH and characterization of an amiE-negative mutant.	Ma Y, Yu H, Pan W, Liu C, Zhang S, Shen Z.	Bioresour Technol	10.1016/j.biortech.2009.07.057	2010
Metabolism	Aerobic degradation of tetrabromobisphenol-A by microbes in river sediment.	Chang BV, Yuan SY, Ren YL.	Chemosphere	10.1016/j.chemosphere.2011.12.057	2012
Genetics	A CRISPR/Cas9-based single-stranded DNA recombineering system for genome editing of Rhodococcus opacus PD630.	Liang Y, Wei Y, Jiao S, Yu H.	Synth Syst Biotechnol	10.1016/j.synbio.2021.08.001	2021
	Biocatalytic characterization of an alcohol dehydrogenase variant deduced from Lactobacillus kefir in asymmetric hydrogen transfer.	Rudzka A, Zdun B, Antos N, Montero LM, Reiter T, Kroutil W, Borowiecki P.	Commun Chem	10.1038/s42004-023-01013-1	2023
	Characteristics investigation on biofilm formation and biodegradation activities of Pseudomonas aeruginosa strain ISJ14 colonizing low density polyethylene (LDPE) surface.	Gupta KK, Devi D.	Heliyon	10.1016/j.heliyon.2020.e04398	2020
Enzymology	Evaluation of FT-IR spectroscopy as a tool to quantify bacteria in binary mixed cultures.	Schawe R, Fetzer I, Tonniges A, Hartig C, Geyer W, Harms H, Chatzinotas A.	J Microbiol Methods	10.1016/j.mimet.2011.05.001	2011
Metabolism	[Adsorptive immobilization of rhodococcal cells in hydrophobized derivatives of wide-pore polyacrylamide cryogel].	Kuyukina MS, Ivshina IB, Rubtsova EV, Ivanov RV, Lozinskii VI.	Prikl Biokhim Mikrobiol	10.1134/s0003683811020104	2011
	Stereoselective Biocatalyzed Reductions of Ginger Active Components Recovered from Industrial Wastes.	Nasti R, Bassanini I, Ferrandi EE, Linguardo F, Bertuletti S, Vanoni M, Riva S, Verotta L, Monti D.	Chembiochem	10.1002/cbic.202200105	2022
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Enzymology	Characterization of a Carbonyl Reductase from Rhodococcus erythropolis WZ010 and Its Variant Y54F for Asymmetric Synthesis of (S)-N-Boc-3-Hydroxypiperidine.	Ying X, Zhang J, Wang C, Huang M, Ji Y, Cheng F, Yu M, Wang Z, Ying M.	Molecules	10.3390/molecules23123117	2018
	Plastics shape the black soldier fly larvae gut microbiome and select for biodegrading functions.	De Filippis F, Bonelli M, Bruno D, Sequino G, Montali A, Reguzzoni M, Pasolli E, Savy D, Cangemi S, Cozzolino V, Tettamanti G, Ercolini D, Casartelli M, Caccia S.	Microbiome	10.1186/s40168-023-01649-0	2023
	The changing metabolic landscape of bile acids - keys to metabolism and immune regulation.	Mohanty I, Allaband C, Mannochio-Russo H, El Abiead Y, Hagey LR, Knight R, Dorrestein PC.	Nat Rev Gastroenterol Hepatol	10.1038/s41575-024-00914-3	2024
	Characterization of the Mycoremediation of n-Alkanes and Branched-Chain Alkanes by Filamentous Fungi from Oil-Polluted Soil Samples in Kazakhstan.	Gaid M, Popke D, Reinhard A, Berzhanova R, Mukasheva T, Urich T, Mikolasch A.	Microorganisms	10.3390/microorganisms11092195	2023
Metabolism	[Kinetics of the degradation of aliphatic hydrocarbons by the bacteria Rhodococcus ruber and Rhodococcus erythropolis].	Zhukov DV, Murygina VP, Kaliuzhnyi SV.	Prikl Biokhim Mikrobiol	10.1134/s0003683807060038	2007
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Metabolism	Biofilm formation and partial biodegradation of polystyrene by the actinomycete Rhodococcus ruber: biodegradation of polystyrene.	Mor R, Sivan A.	Biodegradation	10.1007/s10532-008-9188-0	2008
Metabolism	Engineering cytochrome P450 monooxygenase CYP 116B3 for high dealkylation activity.	Liu L, Schmid RD, Urlacher VB.	Biotechnol Lett	10.1007/s10529-010-0233-9	2010
Metabolism	Glycogenformation by Rhodococcus species and the effect of inhibition of lipid biosynthesis on glycogen accumulation in Rhodococcus opacus PD630.	Hernandez MA, Alvarez HM.	FEMS Microbiol Lett	10.1111/j.1574-6968.2010.02108.x	2010
	Update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA 11: suitability of taxonomic units notified to EFSA until September 2019.	EFSA Panel on Biological Hazards (BIOHAZ), Koutsoumanis K, Allende A, Alvarez-Ordonez A, Bolton D, Bover-Cid S, Chemaly M, Davies R, De Cesare A, Hilbert F, Lindqvist R, Nauta M, Peixe L, Ru G, Simmons M, Skandamis P, Suffredini E, Cocconcelli PS, Fernandez Escamez PS, Maradona MP, Querol A, Suarez JE, Sundh I, Vlak J, Barizzone F, Correia S, Herman L.	EFSA J	10.2903/j.efsa.2020.5965	2020
Metabolism	In vitro immunomodulating activity of biosurfactant glycolipid complex from Rhodococcus ruber.	Kuyukina MS, Ivshina IB, Gein SV, Baeva TA, Chereshnev VA.	Bull Exp Biol Med	10.1007/s10517-007-0324-3	2007
	Characterization of a Virally Encoded Flavodoxin That Can Drive Bacterial Cytochrome P450 Monooxygenase Activity.	Lamb DC, Goldstone JV, Zhao B, Lei L, Mullins JGL, Allen MJ, Kelly SL, Stegeman JJ.	Biomolecules	10.3390/biom12081107	2022
Enzymology	Enzymatic reduction of ketones in "micro-aqueous" media catalyzed by ADH-A from Rhodococcus ruber.	de Gonzalo G, Lavandera I, Faber K, Kroutil W.	Org Lett	10.1021/ol070679c	2007
Metabolism	Comparative analysis of tertiary alcohol esterase activity in bacterial strains isolated from enrichment cultures and from screening strain libraries.	Herter S, Nguyen GS, Thompson ML, Steffen-Munsberg F, Schauer F, Bornscheuer UT, Kourist R.	Appl Microbiol Biotechnol	10.1007/s00253-011-3124-7	2011
	Gut microbiota composition of the isopod Ligia in South Korea exposed to expanded polystyrene pollution.	Lee YM, Choi KM, Mun SH, Yoo JW, Jung JH.	PLoS One	10.1371/journal.pone.0308246	2024
	Diverse effects of a biosurfactant from Rhodococcus ruber IEGM 231 on the adhesion of resting and growing bacteria to polystyrene.	Kuyukina MS, Ivshina IB, Korshunova IO, Stukova GI, Krivoruchko AV.	AMB Express	10.1186/s13568-016-0186-z	2016
Metabolism	Selection and identification of bacterial strains with methyl-tert-butyl ether, ethyl-tert-butyl ether, and tert-amyl methyl ether degrading capacities.	Purswani J, Pozo C, Rodriguez-Diaz M, Gonzalez-Lopez J.	Environ Toxicol Chem	10.1897/08-096.1	2008
	Isolation and Characterization of 1-Hydroxy-2,6,6-trimethyl-4-oxo-2-cyclohexene-1-acetic Acid, a Metabolite in Bacterial Transformation of Abscisic Acid.	Yuzikhin OS, Shaposhnikov AI, Konnova TA, Syrova DS, Hamo H, Ermekkaliev TS, Shevchenko VP, Shevchenko KV, Gogoleva NE, Nizhnikov AA, Safronova VI, Kamnev AA, Belimov AA, Gogolev YV.	Biomolecules	10.3390/biom12101508	2022
Metabolism	Hydrophobised sawdust as a carrier for immobilisation of the hydrocarbon-oxidizing bacterium Rhodococcus ruber.	Podorozhko EA, Lozinsky VI, Ivshina IB, Kuyukina MS, Krivorutchko AB, Philp JC, Cunningham CJ.	Bioresour Technol	10.1016/j.biortech.2007.03.024	2008
Enzymology	Reconstruction of Acinetobacter johnsonii ICE_NC genome using hybrid de novo genome assemblies and identification of the 12alpha-hydroxysteroid dehydrogenase gene.	Favale N, Costa S, Scapoli C, Carrieri A, Sabbioni S, Tamburini E, Benazzo A, Bernacchia G.	J Appl Microbiol	10.1111/jam.15657	2022
	Identification of a Novel Biosurfactant with Antimicrobial Activity Produced by Rhodococcus opacus R7.	Zampolli J, De Giani A, Di Canito A, Sello G, Di Gennaro P.	Microorganisms	10.3390/microorganisms10020475	2022
	Removal of Dinotefuran, Thiacloprid, and Imidaclothiz Neonicotinoids in Water Using a Novel Pseudomonas monteilii FC02-Duckweed (Lemna aequinoctialis) Partnership.	Cai XY, Xu M, Zhu YX, Shi Y, Wang HW.	Front Microbiol	10.3389/fmicb.2022.906026	2022
Enzymology	[Cloning and molecular organization of the polyhydroxyalkanoic acid synthase gene (phaC) of Ralstonia eutropha strain B5786].	Kozhevnikov IV, Volova TG, Hai T, Steinbuchel A.	Prikl Biokhim Mikrobiol	10.1134/s0003683810020031	2010
	Biodegradation and Metabolic Pathway of 17beta-Estradiol by Rhodococcus sp. ED55.	Moreira IS, Murgolo S, Mascolo G, Castro PML.	Int J Mol Sci	10.3390/ijms23116181	2022
Proteome	Comparative Proteomic Analysis of an Ethyl Tert-Butyl Ether-Degrading Bacterial Consortium.	Gunasekaran V, Canela N, Constanti M.	Microorganisms	10.3390/microorganisms10122331	2022
Enzymology	Rhodococcus ruber as a cause of keratitis.	Lalitha P, Srinivasan M, Prajna V.	Cornea	10.1097/01.ico.0000170690.59960.8c	2006
	Oil-Contaminated Soil Remediation with Biodegradation by Autochthonous Microorganisms and Phytoremediation by Maize (Zea mays).	Wojtowicz K, Steliga T, Kapusta P, Brzeszcz J.	Molecules	10.3390/molecules28166104	2023
	Quantum Mechanical Investigation of the Oxidative Cleavage of the C-C Backbone Bonds in Polyethylene Model Molecules.	Jiang Q, Li Z, Cui Z, Wei R, Nie K, Xu H, Liu L.	Polymers (Basel)	10.3390/polym13162730	2021
Metabolism	Biofilm development of the polyethylene-degrading bacterium Rhodococcus ruber.	Sivan A, Szanto M, Pavlov V.	Appl Microbiol Biotechnol	10.1007/s00253-005-0259-4	2006
Metabolism	[Biodegradation of di-n-butyl phthalate by mangrove microorganism Rhodococcus ruber 1K].	Li K, Gu J.	Ying Yong Sheng Tai Xue Bao		2005
Metabolism	NarL, a Novel Repressor for CYP108j1 Expression during PAHs Degradation in Rhodococcus sp. P14.	Kan J, Peng T, Huang T, Xiong G, Hu Z.	Int J Mol Sci	10.3390/ijms21030983	2020
	Polyhydroxyalkanoate recovery from newly screened Bacillus sp. LPPI-18 using various methods of extraction from Loktak Lake sediment sample.	Mohammed S, Ray L.	J Genet Eng Biotechnol	10.1186/s43141-022-00392-7	2022
Metabolism	Bioremediation of environmental endocrine disruptor di-n-butyl phthalate ester by Rhodococcus ruber.	Li J, Chen JA, Zhao Q, Li X, Shu W.	Chemosphere	10.1016/j.chemosphere.2006.03.005	2006
Metabolism	Biodegradation of dimethyl phthalate, diethyl phthalate and di-n-butyl phthalate by Rhodococcus sp. L4 isolated from activated sludge.	Lu Y, Tang F, Wang Y, Zhao J, Zeng X, Luo Q, Wang L.	J Hazard Mater	10.1016/j.jhazmat.2009.02.126	2009
Metabolism	Polystyrene Degradation by Exiguobacterium sp. RIT 594: Preliminary Evidence for a Pathway Containing an Atypical Oxygenase.	Parthasarathy A, Miranda RR, Eddingsaas NC, Chu J, Freezman IM, Tyler AC, Hudson AO.	Microorganisms	10.3390/microorganisms10081619	2022
	Ameliorating process parameters for zeaxanthin yield in Arthrobacter gandavensis MTCC 25325.	Ram S, Tirkey SR, Kumar MA, Mishra S.	AMB Express	10.1186/s13568-020-01008-4	2020
	A Quantum Mechanism Study of the C-C Bond Cleavage to Predict the Bio-Catalytic Polyethylene Degradation.	Xu J, Cui Z, Nie K, Cao H, Jiang M, Xu H, Tan T, Liu L.	Front Microbiol	10.3389/fmicb.2019.00489	2019
Metabolism	Bacterial Biotransformation of Oleic Acid: New Findings on the Formation of gamma-Dodecalactone and 10-Ketostearic Acid in the Culture of Micrococcus luteus.	Boratynski F, Szczepanska E, De Simeis D, Serra S, Brenna E.	Molecules	10.3390/molecules25133024	2020
	In vitro cytokine stimulation assay for glycolipid biosurfactant from Rhodococcus ruber: role of monocyte adhesion.	Gein SV, Kuyukina MS, Ivshina IB, Baeva TA, Chereshnev VA.	Cytotechnology	10.1007/s10616-011-9384-3	2011
Metabolism	Assessment of Biodegradation Efficiency of Polychlorinated Biphenyls (PCBs) and Petroleum Hydrocarbons (TPH) in Soil Using Three Individual Bacterial Strains and Their Mixed Culture.	Steliga T, Wojtowicz K, Kapusta P, Brzeszcz J.	Molecules	10.3390/molecules25030709	2020
	Hydrolytic denitrification and decynidation of acrylonitrile in wastewater with Arthrobacter nitroguajacolicus ZJUTB06-99.	Guo Y, Chang H, Wang Q, Shao C, Xu J.	AMB Express	10.1186/s13568-018-0719-8	2018
Metabolism	Microbial Degradation of Plastic in Aqueous Solutions Demonstrated by CO2 Evolution and Quantification.	Rose RS, Richardson KH, Latvanen EJ, Hanson CA, Resmini M, Sanders IA.	Int J Mol Sci	10.3390/ijms21041176	2020
Metabolism	Biocatalytic scrubbing of gaseous acrylonitrile using Rhodococcus ruber immobilized in synthetic silicone polymer (ImmobaSil) rings.	Roach PC, Ramsden DK, Hughes J, Williams P.	Biotechnol Bioeng	10.1002/bit.10852	2004
Enzymology	Stereoselective Bioreduction of alpha-diazo-beta-keto Esters.	Gonzalez-Granda S, Costin TA, Sa MM, Gotor-Fernandez V, Gotor-Fernandez V.	Molecules	10.3390/molecules25040931	2020
Pathogenicity	Development of a conductimetric biosensor using immobilised Rhodococcus ruber whole cells for the detection and quantification of acrylonitrile.	Roach PC, Ramsden DK, Hughes J, Williams P.	Biosens Bioelectron	10.1016/s0956-5663(03)00122-2	2003
Metabolism	Colonization, biofilm formation and biodegradation of polyethylene by a strain of Rhodococcus ruber.	Orr IG, Hadar Y, Sivan A.	Appl Microbiol Biotechnol	10.1007/s00253-004-1584-8	2004
	Development of a novel chemoenzymatic route to enantiomerically enriched beta-adrenolytic agents. A case study toward propranolol, alprenolol, pindolol, carazolol, moprolol, and metoprolol.	Borowiecki P, Zdun B, Popow N, Wiklinska M, Reiter T, Kroutil W.	RSC Adv	10.1039/d2ra04302e	2022
Genetics	Transcriptome-Guided Insights Into Plastic Degradation by the Marine Bacterium.	Kumari A, Bano N, Bag SK, Chaudhary DR, Jha B.	Front Microbiol	10.3389/fmicb.2021.751571	2021
Metabolism	PMBD: a Comprehensive Plastics Microbial Biodegradation Database.	Gan Z, Zhang H.	Database (Oxford)	10.1093/database/baz119	2019
Metabolism	Alkanotrophic Rhodococcus ruber as a biosurfactant producer.	Philp JC, Kuyukina MS, Ivshina IB, Dunbar SA, Christofi N, Lang S, Wray V.	Appl Microbiol Biotechnol	10.1007/s00253-002-1018-4	2002
Metabolism	Identification and structural characterisation of novel trehalose dinocardiomycolates from n-alkane-grown Rhodococcus opacus 1CP.	Niescher S, Wray V, Lang S, Kaschabek SR, Schlomann M.	Appl Microbiol Biotechnol	10.1007/s00253-005-0113-8	2006
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Enzymology	Engineering Isopropanol Dehydrogenase for Efficient Regeneration of Nicotinamide Cofactors.	Jia Q, Zheng YC, Li HP, Qian XL, Zhang ZJ, Xu JH.	Appl Environ Microbiol	10.1128/aem.00341-22	2022
	Expression of Biofilm-Degrading Enzymes in Plants and Automated High-Throughput Activity Screening Using Experimental Bacillus subtilis Biofilms.	Opdensteinen P, Dietz SJ, Gengenbach BB, Buyel JF.	Front Bioeng Biotechnol	10.3389/fbioe.2021.708150	2021
	Recycling of plastic wastes generated from COVID-19: A comprehensive illustration of type and properties of plastics with remedial options.	Abhilash, Inamdar I.	Sci Total Environ	10.1016/j.scitotenv.2022.155895	2022
	Ionic Liquids for Development of Heterogeneous Catalysts Based on Nanomaterials for Biocatalysis.	Wolny A, Chrobok A.	Nanomaterials (Basel)	10.3390/nano11082030	2021
	NrnA is a 5'-3' exonuclease that processes short RNA substrates in vivo and in vitro.	Weiss CA, Myers TM, Wu CH, Jenkins C, Sondermann H, Lee VT, Winkler WC.	Nucleic Acids Res	10.1093/nar/gkac1091	2022
Enzymology	Chemoenzymatic Oxosulfonylation-Bioreduction Sequence for the Stereoselective Synthesis of beta-Hydroxy Sulfones.	Lopez-Agudo M, Rios-Lombardia N, Gonzalez-Sabin J, Lavandera I, Gotor-Fernandez V.	ChemSusChem	10.1002/cssc.202101313	2022
Metabolism	d-Lactic acid secreted by Chlorella fusca primes pattern-triggered immunity against Pseudomonas syringae in Arabidopsis.	Lee SM, Kim SK, Lee N, Ahn CY, Ryu CM.	Plant J	10.1111/tpj.14661	2020
Metabolism	Reversal of Regioselectivity in Zinc-Dependent Medium-Chain Alcohol Dehydrogenase from Rhodococcus erythropolis toward Octanone Derivatives.	Dhoke GV, Ensari Y, Hacibaloglu DY, Gartner A, Ruff AJ, Bocola M, Davari MD.	Chembiochem	10.1002/cbic.202000247	2020
Metabolism	Preparative isolation of lipid inclusions from Rhodococcus opacus and Rhodococcus ruber and identification of granule-associated proteins.	Kalscheuer R, Waltermann M, Alvarez M, Steinbuchel A.	Arch Microbiol	10.1007/s00203-001-0355-5	2001
Metabolism	Effect of biosurfactants on crude oil desorption and mobilization in a soil system.	Kuyukina MS, Ivshina IB, Makarov SO, Litvinenko LV, Cunningham CJ, Philp JC.	Environ Int	10.1016/j.envint.2004.09.009	2005
Enzymology	Structure-based switch of regioselectivity in the flavin-dependent tryptophan 6-halogenase Thal.	Moritzer AC, Minges H, Prior T, Frese M, Sewald N, Niemann HH.	J Biol Chem	10.1074/jbc.ra118.005393	2019
Metabolism	Biotransformation of Cortisone with Rhodococcus rhodnii: Synthesis of New Steroids.	Zappaterra F, Costa S, Summa D, Bertolasi V, Semeraro B, Pedrini P, Buzzi R, Vertuani S.	Molecules	10.3390/molecules26051352	2021
	Re-evaluation of l(+)-tartaric acid (E 334), sodium tartrates (E 335), potassium tartrates (E 336), potassium sodium tartrate (E 337) and calcium tartrate (E 354) as food additives.	EFSA Panel on Food Additives and Flavourings (FAF), Younes M, Aquilina G, Castle L, Engel KH, Fowler P, Frutos Fernandez MJ, Furst P, Gurtler R, Gundert-Remy U, Husoy T, Mennes W, Shah R, Waalkens-Berendsen I, Wolfle D, Boon P, Tobback P, Wright M, Aguilera J, Rincon AM, Tard A, Moldeus P.	EFSA J	10.2903/j.efsa.2020.6030	2020
Enzymology	Crystallization and preliminary X-ray diffraction analysis of (R)-carbonyl reductase from Candida parapsilosis.	Wang S, Nie Y, Yan X, Ko TP, Huang CH, Chan HC, Guo RT, Xiao R.	Acta Crystallogr F Struct Biol Commun	10.1107/s2053230x1400908x	2014
Metabolism	Dynamics of bacterial populations during bench-scale bioremediation of oily seawater and desert soil bioaugmented with coastal microbial mats.	Ali N, Dashti N, Salamah S, Sorkhoh N, Al-Awadhi H, Radwan S.	Microb Biotechnol	10.1111/1751-7915.12326	2016
	In Vivo Characterization and Application of the PHA Synthase from Azotobacter vinelandii for the Biosynthesis of Polyhydroxyalkanoate Containing 4-Hydroxybutyrate.	Mok PS, Chuah JA, Najimudin N, Liew PW, Jong BC, Sudesh K.	Polymers (Basel)	10.3390/polym13101576	2021
Metabolism	Use of heterotrophic CO2 assimilation as a measure of metabolic activity in planktonic and sessile bacteria.	Roslev P, Larsen MB, Jorgensen D, Hesselsoe M.	J Microbiol Methods	10.1016/j.mimet.2004.08.002	2004
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Metabolism	The Genome Analysis of Methylobacterium populi YC-XJ1 with Diverse Xenobiotics Biodegrading Capacity and Degradation Characteristics of Related Hydrolase.	Li X, Wang J, Jia Y, Reheman A, Yan Y.	Int J Mol Sci	10.3390/ijms21124436	2020
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Stress	Engineering enhanced thermostability into the Geobacillus pallidus nitrile hydratase.	Van Wyk JC, Sewell BT, Danson MJ, Tsekoa TL, Sayed MF, Cowan DA.	Curr Res Struct Biol	10.1016/j.crstbi.2022.07.002	2022
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Metabolism	Statistical Optimisation of Phenol Degradation and Pathway Identification through Whole Genome Sequencing of the Cold-Adapted Antarctic Bacterium, Rhodococcus sp. Strain AQ5-07.	Lee GLY, Zakaria NN, Convey P, Futamata H, Zulkharnain A, Suzuki K, Abdul Khalil K, Shaharuddin NA, Alias SA, Gonzalez-Rocha G, Ahmad SA.	Int J Mol Sci	10.3390/ijms21249363	2020
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Genetics	Insights into plastic biodegradation: community composition and functional capabilities of the superworm (Zophobas morio) microbiome in styrofoam feeding trials.	Sun J, Prabhu A, Aroney STN, Rinke C.	Microb Genom	10.1099/mgen.0.000842	2022
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Metabolism	Biodegradation of a high molecular weight aliphatic ether--indications of an unusual biodegradation pathway.	Jenisch-Anton A, Mikolajczak A, Rabenstein A, Klindworth J, Fischer U, Michaelis W.	Biodegradation	10.1023/a:1008375300828	1999
	Effects of polystyrene nanoparticles on the microbiota and functional diversity of enzymes in soil.	Awet TT, Kohl Y, Meier F, Straskraba S, Grun AL, Ruf T, Jost C, Drexel R, Tunc E, Emmerling C.	Environ Sci Eur	10.1186/s12302-018-0140-6	2018
Metabolism	Production of Lipopeptide Biosurfactant by a Hydrocarbon-Degrading Antarctic Rhodococcus.	Habib S, Ahmad SA, Wan Johari WL, Abd Shukor MY, Alias SA, Smykla J, Saruni NH, Abdul Razak NS, Yasid NA.	Int J Mol Sci	10.3390/ijms21176138	2020
Metabolism	Constitutive expression of the cytochrome P450 EthABCD monooxygenase system enables degradation of synthetic dialkyl ethers in Aquincola tertiaricarbonis L108.	Schuster J, Purswani J, Breuer U, Pozo C, Harms H, Muller RH, Rohwerder T.	Appl Environ Microbiol	10.1128/aem.03348-12	2013
Metabolism	Biodegradation of the organic disulfide 4,4'-dithiodibutyric acid by Rhodococcus spp.	Khairy H, Wubbeler JH, Steinbuchel A.	Appl Environ Microbiol	10.1128/aem.02059-15	2015
	The Role of Extracellular DNA in Microbial Attachment to Oxidized Silicon Surfaces in the Presence of Ca2+ and Na.	Morales-Garcia AL, Walton R, Blakeman JT, Banwart SA, Harding JH, Geoghegan M, Freeman CL, Rolfe SA.	Langmuir	10.1021/acs.langmuir.1c01410	2021
Metabolism	A sensitive, viable-colony staining method using Nile red for direct screening of bacteria that accumulate polyhydroxyalkanoic acids and other lipid storage compounds.	Spiekermann P, Rehm BH, Kalscheuer R, Baumeister D, Steinbuchel A.	Arch Microbiol	10.1007/s002030050681	1999
Metabolism	Selective bacterial colonization processes on polyethylene waste samples in an abandoned landfill site.	Puglisi E, Romaniello F, Galletti S, Boccaleri E, Frache A, Cocconcelli PS.	Sci Rep	10.1038/s41598-019-50740-w	2019
Metabolism	Degradation of trichloroethene by a linear-plasmid-encoded alkene monooxygenase in Rhodococcus corallinus (Nocardia corallina) B-276.	Saeki H, Akira M, Furuhashi K, Averhoff B, Gottschalk G.	Microbiology (Reading)	10.1099/13500872-145-7-1721	1999
Metabolism	Synthesis of chiral cyanohydrins by recombinant Escherichia coli cells in a micro-aqueous reaction system.	Scholz KE, Okrob D, Kopka B, Grunberger A, Pohl M, Jaeger KE, Krauss U.	Appl Environ Microbiol	10.1128/aem.00582-12	2012
	Production and partial characterization of antibody to cord factor (trehalose 6,6'-dimycolate) in mice.	Fujiwara N, Oka S, Ide M, Kashima K, Honda T, Yano I.	Microbiol Immunol	10.1111/j.1348-0421.1999.tb02471.x	1999
Metabolism	Acetylene degradation by new isolates of aerobic bacteria and comparison of acetylene hydratase enzymes.	Rosner BM, Rainey FA, Kroppenstedt RM, Schink B.	FEMS Microbiol Lett	10.1111/j.1574-6968.1997.tb10285.x	1997
	Identification, cloning and sequence analysis of the poly(3-hydroxyalkanoic acid) synthase gene of the gram-positive bacterium Rhodococcus ruber.	Pieper U, Steinbuchel A.	FEMS Microbiol Lett	10.1016/0378-1097(92)90459-2	1992
Metabolism	Cholesterol degradation by Gordonia cholesterolivorans.	Drzyzga O, Fernandez de las Heras L, Morales V, Navarro Llorens JM, Perera J.	Appl Environ Microbiol	10.1128/aem.05149-11	2011
	Biosurfactant production by rhodococcus erythropolis and its application to oil removal.	Pacheco GJ, Ciapina EM, Gomes Ede B, Junior NP.	Braz J Microbiol	10.1590/s1517-83822010000300019	2010
Metabolism	Purification and properties of a novel quizalofop-p-ethyl-hydrolyzing esterase involved in quizalofop-p-ethyl degradation by Pseudomonas sp. J-2.	Zhang H, Li M, Li J, Wang G, Liu Y.	Microb Cell Fact	10.1186/s12934-017-0695-8	2017
	Isolation and Characterization of a Nitrile-Hydrolysing Bacterium Isoptericola variabilis RGT01.	Kaur G, Soni P, Tewari R, Sharma R.	Indian J Microbiol	10.1007/s12088-014-0453-0	2014
Metabolism	Deciphering the molecular basis of mycobacteria and lipoglycan recognition by the C-type lectin Dectin-2.	Decout A, Silva-Gomes S, Drocourt D, Blattes E, Riviere M, Prandi J, Larrouy-Maumus G, Caminade AM, Hamasur B, Kallenius G, Kaur D, Dobos KM, Lucas M, Sutcliffe IC, Besra GS, Appelmelk BJ, Gilleron M, Jackson M, Vercellone A, Tiraby G, Nigou J.	Sci Rep	10.1038/s41598-018-35393-5	2018
	Exploring Biodiversity and Arsenic Metabolism of Microbiota Inhabiting Arsenic-Rich Groundwaters in Northern Italy.	Cavalca L, Zecchin S, Zaccheo P, Abbas B, Rotiroti M, Bonomi T, Muyzer G.	Front Microbiol	10.3389/fmicb.2019.01480	2019
Metabolism	Diclofenac Degradation-Enzymes, Genetic Background and Cellular Alterations Triggered in Diclofenac-Metabolizing Strain Pseudomonas moorei KB4.	Zur J, Pinski A, Wojcieszynska D, Smulek W, Guzik U.	Int J Mol Sci	10.3390/ijms21186786	2020
	Functionalized polystyrene nanoparticles as a platform for studying bio-nano interactions.	Loos C, Syrovets T, Musyanovych A, Mailander V, Landfester K, Nienhaus GU, Simmet T.	Beilstein J Nanotechnol	10.3762/bjnano.5.250	2014
Phylogeny	Plant Nitrilase Homologues in Fungi: Phylogenetic and Functional Analysis with Focus on Nitrilases in Trametes versicolor and Agaricus bisporus.	Rucka L, Kulik N, Novotny P, Sedova A, Petraskova L, Prihodova R, Kristkova B, Halada P, Patek M, Martinkova L.	Molecules	10.3390/molecules25173861	2020
Metabolism	Different genome-wide transcriptome responses of Nocardioides simplex VKM Ac-2033D to phytosterol and cortisone 21-acetate.	Shtratnikova VY, Sshelkunov MI, Fokina VV, Bragin EY, Shutov AA, Donova MV.	BMC Biotechnol	10.1186/s12896-021-00668-9	2021
	Occurrence of Biosurfactant Producing Bacillus spp. in Diverse Habitats.	Joshi SJ, Suthar H, Yadav AK, Hingurao K, Nerurkar A.	ISRN Biotechnol	10.5402/2013/652340	2013
Metabolism	Linking low-level stable isotope fractionation to expression of the cytochrome P450 monooxygenase-encoding ethB gene for elucidation of methyl tert-butyl ether biodegradation in aerated treatment pond systems.	Jechalke S, Rosell M, Martinez-Lavanchy PM, Perez-Leiva P, Rohwerder T, Vogt C, Richnow HH.	Appl Environ Microbiol	10.1128/aem.01698-10	2011
	Induction, expression and characterisation of laccase genes from the marine-derived fungal strains Nigrospora sp. CBMAI 1328 and Arthopyrenia sp. CBMAI 1330.	Passarini MR, Ottoni CA, Santos C, Lima N, Sette LD.	AMB Express	10.1186/s13568-015-0106-7	2015
Metabolism	In vitro characterization of an enzymatic redox cascade composed of an alcohol dehydrogenase, an enoate reductases and a Baeyer-Villiger monooxygenase.	Oberleitner N, Peters C, Rudroff F, Bornscheuer UT, Mihovilovic MD.	J Biotechnol	10.1016/j.jbiotec.2014.04.008	2014
Metabolism	Molecular basis for biosynthesis and accumulation of polyhydroxyalkanoic acids in bacteria.	Steinbuchel A, Hustede E, Liebergesell M, Pieper U, Timm A, Valentin H.	FEMS Microbiol Rev	10.1111/j.1574-6968.1992.tb05841.x	1992
Metabolism	Involvement of the cytochrome P450 system EthBAD in the N-deethoxymethylation of acetochlor by Rhodococcus sp. strain T3-1.	Wang F, Zhou J, Li Z, Dong W, Hou Y, Huang Y, Cui Z.	Appl Environ Microbiol	10.1128/aem.03764-14	2015
	Minireactor-based high-throughput temperature profiling for the optimization of microbial and enzymatic processes.	Kunze M, Lattermann C, Diederichs S, Kroutil W, Buchs J.	J Biol Eng	10.1186/1754-1611-8-22	2014
	Overcoming challenges in lignocellulosic biomass pretreatment for second-generation (2G) sugar production: emerging role of nano, biotechnological and promising approaches.	Antunes FAF, Chandel AK, Teran-Hilares R, Ingle AP, Rai M, Dos Santos Milessi TS, da Silva SS, Dos Santos JC.	3 Biotech	10.1007/s13205-019-1761-1	2019
Metabolism	Binding of the major phasin, PhaP1, from Ralstonia eutropha H16 to poly(3-hydroxybutyrate) granules.	Neumann L, Spinozzi F, Sinibaldi R, Rustichelli F, Potter M, Steinbuchel A.	J Bacteriol	10.1128/jb.01486-07	2008
Phylogeny	Next-generation systematics: An innovative approach to resolve the structure of complex prokaryotic taxa.	Sangal V, Goodfellow M, Jones AL, Schwalbe EC, Blom J, Hoskisson PA, Sutcliffe IC.	Sci Rep	10.1038/srep38392	2016
	Applications and mechanisms of ionic liquids in whole-cell biotransformation.	Fan LL, Li HJ, Chen QH.	Int J Mol Sci	10.3390/ijms150712196	2014
Metabolism	Crystal structure of bovine CD1b3 with endogenously bound ligands.	Girardi E, Wang J, Mac TT, Versluis C, Bhowruth V, Besra G, Heck AJ, Van Rhijn I, Zajonc DM.	J Immunol	10.4049/jimmunol.1000042	2010
Metabolism	Tuning the Mycobacterium tuberculosis Alternative Sigma Factor SigF through the Multidomain Regulator Rv1364c and Osmosensory Kinase Protein Kinase D.	Misra R, Menon D, Arora G, Virmani R, Gaur M, Naz S, Jaisinghani N, Bhaduri A, Bothra A, Maji A, Singhal A, Karwal P, Hentschker C, Becher D, Rao V, Nandicoori VK, Gandotra S, Singh Y.	J Bacteriol	10.1128/jb.00725-18	2019
Transcriptome	Induction of Viable but Nonculturable State in Rhodococcus and Transcriptome Analysis Using RNA-seq.	Su X, Guo L, Ding L, Qu K, Shen C.	PLoS One	10.1371/journal.pone.0147593	2016
Metabolism	Cloning of a genetically unstable cytochrome P-450 gene cluster involved in degradation of the pollutant ethyl tert-butyl ether by Rhodococcus ruber.	Chauvaux S, Chevalier F, Le Dantec C, Fayolle F, Miras I, Kunst F, Beguin P.	J Bacteriol	10.1128/jb.183.22.6551-6557.2001	2001
Enzymology	Microbial Community Structure in a Serpentine-Hosted Abiotic Gas Seepage at the Chimaera Ophiolite, Turkey.	Neubeck A, Sun L, Muller B, Ivarsson M, Hosgormez H, Ozcan D, Broman C, Schnurer A.	Appl Environ Microbiol	10.1128/aem.03430-16	2017
	A phasin with many faces: structural insights on PhaP from Azotobacter sp. FA8.	Mezzina MP, Wetzler DE, Catone MV, Bucci H, Di Paola M, Pettinari MJ.	PLoS One	10.1371/journal.pone.0103012	2014
	Crystallization and initial X-ray analysis of polyhydroxyalkanoate granule-associated protein from Aeromonas hydrophila.	Zhao M, Li Z, Zheng W, Lou Z, Chen GQ.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309106025000	2006
Metabolism	Genetic analysis of Comamonas acidovorans polyhydroxyalkanoate synthase and factors affecting the incorporation of 4-hydroxybutyrate monomer.	Sudesh K, Fukui T, Doi Y.	Appl Environ Microbiol	10.1128/aem.64.9.3437-3443.1998	1998
Metabolism	Phasins, Multifaceted Polyhydroxyalkanoate Granule-Associated Proteins.	Mezzina MP, Pettinari MJ.	Appl Environ Microbiol	10.1128/aem.01161-16	2016
Metabolism	Glyoxylate metabolism is a key feature of the metabolic degradation of 1,4-dioxane by Pseudonocardia dioxanivorans strain CB1190.	Grostern A, Sales CM, Zhuang WQ, Erbilgin O, Alvarez-Cohen L.	Appl Environ Microbiol	10.1128/aem.00067-12	2012
Metabolism	Identification of the region of a 14-kilodalton protein of Rhodococcus ruber that is responsible for the binding of this phasin to polyhydroxyalkanoic acid granules.	Pieper-Furst U, Madkour MH, Mayer F, Steinbuchel A.	J Bacteriol	10.1128/jb.177.9.2513-2523.1995	1995
Metabolism	Enhanced biosurfactant production through cloning of three genes and role of esterase in biosurfactant release.	Sekhon KK, Khanna S, Cameotra SS.	Microb Cell Fact	10.1186/1475-2859-10-49	2011
Phylogeny	Microbes on a Bottle: Substrate, Season and Geography Influence Community Composition of Microbes Colonizing Marine Plastic Debris.	Oberbeckmann S, Osborn AM, Duhaime MB.	PLoS One	10.1371/journal.pone.0159289	2016
Metabolism	A closer look on the polyhydroxybutyrate- (PHB-) negative phenotype of Ralstonia eutropha PHB-4.	Raberg M, Voigt B, Hecker M, Steinbuchel A.	PLoS One	10.1371/journal.pone.0095907	2014
Enzymology	Purification and characterization of a 14-kilodalton protein that is bound to the surface of polyhydroxyalkanoic acid granules in Rhodococcus ruber.	Pieper-Furst U, Madkour MH, Mayer F, Steinbuchel A.	J Bacteriol	10.1128/jb.176.14.4328-4337.1994	1994
	Use of whole genome sequences to develop a molecular phylogenetic framework for Rhodococcus fascians and the Rhodococcus genus.	Creason AL, Davis EW, Putnam ML, Vandeputte OM, Chang JH.	Front Plant Sci	10.3389/fpls.2014.00406	2014
Enzymology	Characterization of site-specific mutations in a short-chain-length/medium-chain-length polyhydroxyalkanoate synthase: in vivo and in vitro studies of enzymatic activity and substrate specificity.	Chuah JA, Tomizawa S, Yamada M, Tsuge T, Doi Y, Sudesh K, Numata K.	Appl Environ Microbiol	10.1128/aem.00564-13	2013
	Potential Use of Microbial Enzymes for the Conversion of Plastic Waste Into Value-Added Products: A Viable Solution.	Tamoor M, Samak NA, Jia Y, Mushtaq MU, Sher H, Bibi M, Xing J.	Front Microbiol	10.3389/fmicb.2021.777727	2021
Metabolism	Biodegradation of low-density polyethylene (LDPE) by mixed culture of Lysinibacillus xylanilyticus and Aspergillus niger in soil.	Esmaeili A, Pourbabaee AA, Alikhani HA, Shabani F, Esmaeili E.	PLoS One	10.1371/journal.pone.0071720	2013
Metabolism	Polychlorinated biphenyl (PCB)-degrading bacteria associated with trees in a PCB-contaminated site.	Leigh MB, Prouzova P, Mackova M, Macek T, Nagle DP, Fletcher JS.	Appl Environ Microbiol	10.1128/aem.72.4.2331-2342.2006	2006
Enzymology	Analysis of a 24-kilodalton protein associated with the polyhydroxyalkanoic acid granules in Alcaligenes eutrophus.	Wieczorek R, Pries A, Steinbuchel A, Mayer F.	J Bacteriol	10.1128/jb.177.9.2425-2435.1995	1995
Enzymology	Engineering cofactor preference of ketone reducing biocatalysts: A mutagenesis study on a gamma-diketone reductase from the yeast Saccharomyces cerevisiae serving as an example.	Katzberg M, Skorupa-Parachin N, Gorwa-Grauslund MF, Bertau M.	Int J Mol Sci	10.3390/ijms11041735	2010
Metabolism	Pentalenolactone biosynthesis: Molecular cloning and assignment of biochemical function to PtlF, a short-chain dehydrogenase from Streptomyces avermitilis, and identification of a new biosynthetic intermediate.	You Z, Omura S, Ikeda H, Cane DE.	Arch Biochem Biophys	10.1016/j.abb.2006.11.016	2007
	Inactivation of gilGT, encoding a C-glycosyltransferase, and gilOIII, encoding a P450 enzyme, allows the details of the late biosynthetic pathway to gilvocarcin V to be delineated.	Liu T, Kharel MK, Fischer C, McCormick A, Rohr J.	Chembiochem	10.1002/cbic.200600031	2006
Metabolism	A new family of intrinsically disordered proteins: structural characterization of the major phasin PhaF from Pseudomonas putida KT2440.	Maestro B, Galan B, Alfonso C, Rivas G, Prieto MA, Sanz JM.	PLoS One	10.1371/journal.pone.0056904	2013
Metabolism	A novel type of conserved DNA-binding domain in the transcriptional regulators of the AlgR/AgrA/LytR family.	Nikolskaya AN, Galperin MY.	Nucleic Acids Res	10.1093/nar/30.11.2453	2002
Enzymology	Mycolyltransferase-mediated glycolipid exchange in Mycobacteria.	Matsunaga I, Naka T, Talekar RS, McConnell MJ, Katoh K, Nakao H, Otsuka A, Behar SM, Yano I, Moody DB, Sugita M.	J Biol Chem	10.1074/jbc.m805776200	2008
Metabolism	Identification of the major functional proteins of prokaryotic lipid droplets.	Ding Y, Yang L, Zhang S, Wang Y, Du Y, Pu J, Peng G, Chen Y, Zhang H, Yu J, Hang H, Wu P, Yang F, Yang H, Steinbuchel A, Liu P.	J Lipid Res	10.1194/jlr.m021899	2012
Metabolism	In vivo immobilization of fusion proteins on bioplastics by the novel tag BioF.	Moldes C, Garcia P, Garcia JL, Prieto MA.	Appl Environ Microbiol	10.1128/aem.70.6.3205-3212.2004	2004
Metabolism	An inducible propane monooxygenase is responsible for N-nitrosodimethylamine degradation by Rhodococcus sp. strain RHA1.	Sharp JO, Sales CM, LeBlanc JC, Liu J, Wood TK, Eltis LD, Mohn WW, Alvarez-Cohen L.	Appl Environ Microbiol	10.1128/aem.01697-07	2007
	Recent advanced development of metal-loaded mesoporous organosilicas as catalytic nanoreactors.	Liang Y.	Nanoscale Adv	10.1039/d1na00488c	2021
Enzymology	Novel and economical purification of recombinant proteins: intein-mediated protein purification using in vivo polyhydroxybutyrate (PHB) matrix association.	Banki MR, Gerngross TU, Wood DW.	Protein Sci	10.1110/ps.041296305	2005
Metabolism	A large gene cluster in Burkholderia xenovorans encoding abietane diterpenoid catabolism.	Smith DJ, Park J, Tiedje JM, Mohn WW.	J Bacteriol	10.1128/jb.00179-07	2007
Metabolism	A gene cluster for biosynthesis of the sesquiterpenoid antibiotic pentalenolactone in Streptomyces avermitilis.	Tetzlaff CN, You Z, Cane DE, Takamatsu S, Omura S, Ikeda H.	Biochemistry	10.1021/bi060419n	2006
	Analysis of expressed sequence tags from the fungus Aspergillus oryzae cultured under different conditions.	Akao T, Sano M, Yamada O, Akeno T, Fujii K, Goto K, Ohashi-Kunihiro S, Takase K, Yasukawa-Watanabe M, Yamaguchi K, Kurihara Y, Maruyama J, Juvvadi PR, Tanaka A, Hata Y, Koyama Y, Yamaguchi S, Kitamoto N, Gomi K, Abe K, Takeuchi M, Kobayashi T, Horiuchi H, Kitamoto K, Kashiwagi Y, Machida M, Akita O.	DNA Res	10.1093/dnares/dsm008	2007
Metabolism	Role of phaD in accumulation of medium-chain-length Poly(3-hydroxyalkanoates) in Pseudomonas oleovorans.	Klinke S, de Roo G, Witholt B, Kessler B.	Appl Environ Microbiol	10.1128/aem.66.9.3705-3710.2000	2000
Metabolism	Accumulation of high-value lipids in single-cell microorganisms: a mechanistic approach and future perspectives.	Garay LA, Boundy-Mills KL, German JB.	J Agric Food Chem	10.1021/jf4042134	2014
Metabolism	Metabolic engineering of a novel propionate-independent pathway for the production of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) in recombinant Salmonella enterica serovar typhimurium.	Aldor IS, Kim SW, Prather KL, Keasling JD.	Appl Environ Microbiol	10.1128/aem.68.8.3848-3854.2002	2002
Enzymology	Identification and analysis of the polyhydroxyalkanoate-specific beta-ketothiolase and acetoacetyl coenzyme A reductase genes in the cyanobacterium Synechocystis sp. strain PCC6803.	Taroncher-Oldenburg G, Nishina K, Stephanopoulos G.	Appl Environ Microbiol	10.1128/aem.66.10.4440-4448.2000	2000
Metabolism	Metabolic pathway for propionate utilization by phosphorus-accumulating organisms in activated sludge: 13C labeling and in vivo nuclear magnetic resonance.	Lemos PC, Serafim LS, Santos MM, Reis MA, Santos H.	Appl Environ Microbiol	10.1128/aem.69.1.241-251.2003	2003
Metabolism	Neutral lipid bodies in prokaryotes: recent insights into structure, formation, and relationship to eukaryotic lipid depots.	Waltermann M, Steinbuchel A.	J Bacteriol	10.1128/jb.187.11.3607-3619.2005	2005
Metabolism	Poly-beta-hydroxybutyrate biosynthesis in the facultative methylotroph methylobacterium extorquens AM1: identification and mutation of gap11, gap20, and phaR.	Korotkova N, Chistoserdova L, Lidstrom ME.	J Bacteriol	10.1128/jb.184.22.6174-6181.2002	2002
Enzymology	Isolation and characterization of a rolling-circle-type plasmid from Rhodococcus erythropolis and application of the plasmid to multiple-recombinant-protein expression.	Nakashima N, Tamura T.	Appl Environ Microbiol	10.1128/aem.70.9.5557-5568.2004	2004
Metabolism	Transcriptional activation of quinoline degradation operons of Pseudomonas putida 86 by the AraC/XylS-type regulator OxoS and cross-regulation of the PqorM promoter by XylS.	Carl B, Fetzner S.	Appl Environ Microbiol	10.1128/aem.71.12.8618-8626.2005	2005
Metabolism	Trehalose 6,6'-dimycolate (Cord factor) enhances neovascularization through vascular endothelial growth factor production by neutrophils and macrophages.	Sakaguchi I, Ikeda N, Nakayama M, Kato Y, Yano I, Kaneda K.	Infect Immun	10.1128/iai.68.4.2043-2052.2000	2000
Enzymology	Spatial and temporal analysis of the microbial community in slow sand filters used for treating horticultural irrigation water.	Calvo-Bado LA, Pettitt TR, Parsons N, Petch GM, Morgan JA, Whipps JM.	Appl Environ Microbiol	10.1128/aem.69.4.2116-2125.2003	2003
Metabolism	Whole-genome analysis of the methyl tert-butyl ether-degrading beta-proteobacterium Methylibium petroleiphilum PM1.	Kane SR, Chakicherla AY, Chain PS, Schmidt R, Shin MW, Legler TC, Scow KM, Larimer FW, Lucas SM, Richardson PM, Hristova KR.	J Bacteriol	10.1128/jb.01259-06	2007
Metabolism	PhaF, a polyhydroxyalkanoate-granule-associated protein of Pseudomonas oleovorans GPo1 involved in the regulatory expression system for pha genes.	Prieto MA, Buhler B, Jung K, Witholt B, Kessler B.	J Bacteriol	10.1128/jb.181.3.858-868.1999	1999
Enzymology	Diversity of nitrile hydratase and amidase enzyme genes in Rhodococcus erythropolis recovered from geographically distinct habitats.	Brandao PF, Clapp JP, Bull AT.	Appl Environ Microbiol	10.1128/aem.69.10.5754-5766.2003	2003
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Metabolism	Identification of different alkane hydroxylase systems in Rhodococcus ruber strain SP2B, an hexane-degrading actinomycete.	Amouric A, Quemeneur M, Grossi V, Liebgott PP, Auria R, Casalot L	J Appl Microbiol	10.1111/j.1365-2672.2009.04592.x	2009
Phylogeny	Morphological, physiological, and molecular characterization of a newly isolated steroid-degrading actinomycete, identified as rhodococcus ruber strain Chol-4.	Fernandez de Las Heras L, Garcia Fernandez E, Maria Navarro Llorens J, Perera J, Drzyzga O	Curr Microbiol	10.1007/s00284-009-9474-z	2009
Phylogeny	Study of a hexane-degrading consortium in a biofilter and in liquid culture: biodiversity, kinetics and characterization of degrading strains.	Amouric A, Verhe F, Auria R, Casalot L	FEMS Microbiol Ecol	10.1111/j.1574-6941.2005.00017.x	2006
Metabolism	Enantioselectivity of epoxide hydrolase catalysed oxirane ring opening: a 3D QSAR study.	Paier J, Stockner T, Steinreiber A, Faber K, Fabian WM	J Comput Aided Mol Des	10.1023/a:1024562326498	2003
Phylogeny	[Study on the reclassification of two deposited strains AS4.1186 and AS4.1187 of Nocardia].	Zhang J, Zhang Y, Liu Z	Wei Sheng Wu Xue Bao		2002
Genetics	Rhodococcus indonesiensis sp. nov. a new member of the Rhodococcus ruber lineage isolated from sediment of a neutral hot spring and reclassification of Rhodococcus electrodiphilus (Ramaprasad et al. 2018) as a later heterotypic synonym of Rhodococcus ruber (Kruse 1896) Goodfellow and Alderson 1977 (Approved Lists 1980).	Kusuma AB, Fenylestari G, Ammar F, Nououi I, Goodfellow M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006236	2024
	Rhodoflexus caldus gen. nov., sp. nov., a new member of the phylum Bacteroidota isolated from a hot spring sediment.	Liu ZT, Liu L, Xian WD, Lian ZH, Dai JY, Fang BZ, Li MM, Lv AP, Luo ZH, Jiao JY, Li WJ.	Antonie Van Leeuwenhoek	10.1007/s10482-022-01742-8	2022
Phylogeny	Nocardiopsis codii sp. nov., and Rhodococcus chondri sp. nov., two novel actinomycetal species isolated from macroalgae collected in the northern Portuguese coast.	Girao M, Lequint Z, Rego A, Costa I, Proenca DN, Morais PV, Carvalho MF.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006483	2024
Phylogeny	Rhodococcus aerolatus sp. nov., isolated from subarctic rainwater.	Hwang CY, Lee I, Cho Y, Lee YM, Baek K, Jung YJ, Yang YY, Lee T, Rhee TS, Lee HK.	Int J Syst Evol Microbiol	10.1099/ijs.0.070086-0	2015
Enzymology	Candidatus Kaistella beijingensis sp. nov., Isolated from a Municipal Wastewater Treatment Plant, Is Involved in Sludge Foaming.	Song Y, Jiang CY, Liang ZL, Zhu HZ, Jiang Y, Yin Y, Qin YL, Huang HJ, Wang BJ, Wei ZY, Cheng RX, Liu ZP, Liu Y, Jin T, Wang AJ, Liu SJ.	Appl Environ Microbiol	10.1128/aem.01534-21	2021
Phylogeny	Rhodococcus aetherivorans sp. nov., a new species that contains methyl t-butyl ether-degrading actinomycetes.	Goodfellow M, Jones AL, Maldonado LA, Salanitro J.	Syst Appl Microbiol	10.1078/0723-2020-00254	2004
Phylogeny	Rhodococcus electrodiphilus sp. nov., a marine electro active actinobacterium isolated from coral reef.	Ramaprasad EVV, Mahidhara G, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijsem.0.002895	2018