Rhodococcus corynebacterioides DSM 20151 is an obligate aerobe, Gram-positive, rod-shaped bacterium that was isolated from air contaminant of culture medium.
Gram-positive rod-shaped obligate aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Mycobacteriales |
| Family Nocardiaceae |
| Genus Rhodococcus |
| Species Rhodococcus corynebacterioides |
| Full scientific name Rhodococcus corynebacterioides (Serrano et al. 1972) Yassin and Schaal 2005 |
| Synonyms (2) |
| BacDive ID | Other strains from Rhodococcus corynebacterioides (8) | Type strain |
|---|---|---|
| 10833 | R. corynebacterioides DSM 44601, DSM 12676, NRRL B-184 | |
| 135459 | R. corynebacterioides CIP 104291, NRRL B-24250 | |
| 136293 | R. corynebacterioides CIP 104294, NRRL B-24251 | |
| 153413 | R. corynebacterioides CCUG 49507 | |
| 153481 | R. corynebacterioides CCUG 49711 | |
| 154323 | R. corynebacterioides CCUG 53084 | |
| 155069 | R. corynebacterioides CCUG 56373 | |
| 156273 | R. corynebacterioides CCUG 60987 |
| @ref: | 8575 |
| multimedia content: | DSM_20151-1.jpg |
| multimedia.multimedia content: | https://www.dsmz.de/microorganisms/photos/DSM_20151-1.jpg |
| intellectual property rights: | © Leibniz-Institut DSMZ |
| manual_annotation: | 1 |
| @ref: | 8575 |
| multimedia content: | DSM_20151.jpg |
| multimedia.multimedia content: | https://www.dsmz.de/microorganisms/photos/DSM_20151.jpg |
| caption: | Medium 535 28°C |
| intellectual property rights: | © Leibniz-Institut DSMZ |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 8575 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | Medium recipe at MediaDive | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water | ||
| 41205 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 118759 | CIP Medium 3 | Medium recipe at CIP |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 8575 | A31 | A1gamma m-Dpm-direct |
| 67770 | Observationquinones: MK-8(H2) |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 118759 | 16947 ChEBI | citrate | - | carbon source | |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | - | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 118759 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68371 | 4853 ChEBI | esculin | - | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 118759 | 606565 ChEBI | hippurate | + | hydrolysis | |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68371 | 17306 ChEBI | maltose | - | builds acid from | from API 50CH acid |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | - | builds acid from | from API 50CH acid |
| 118759 | 17632 ChEBI | nitrate | - | reduction | |
| 118759 | 17632 ChEBI | nitrate | - | respiration | |
| 118759 | 16301 ChEBI | nitrite | - | reduction | |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 118759 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 118759 | amylase | + | ||
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 118759 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 118759 | caseinase | - | 3.4.21.50 | |
| 118759 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 118759 | DNase | - | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 118759 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 118759 | gelatinase | - | ||
| 118759 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 118759 | lipase | - | ||
| 68382 | lipase (C 14) | + | from API zym | |
| 118759 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 118759 | ornithine decarboxylase | - | 4.1.1.17 | |
| 118759 | oxidase | - | ||
| 118759 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 118759 | protease | - | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 118759 | tryptophan deaminase | - | ||
| 118759 | tween esterase | + | ||
| 118759 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | + | from API zym |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118759 | not determinedn.d. | +/- | - | - | - | - | - | - | - | - | - | +/- | +/- | +/- | - | - | - | - | +/- | +/- | - | - | - | - | - | - | - | - | - | - | - | +/- | +/- | - | - | - | - | - | +/- | - | +/- | - | - | - | - | +/- | - | - | - | - |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | ASM189476v1 assembly for Rhodococcoides corynebacterioides NBRC 14404 | contig | 1219012 | 75.2 | ||||
| 67770 | ASM164667v1 assembly for Rhodococcoides corynebacterioides DSM 20151 | contig | 53972 | 41.52 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Rhodococcus corynebacterioides gene for 16S ribosomal RNA, partial sequence, strain: DSM 20151 | AB915624 | 941 | 53972 | ||
| 20218 | Rhodococcus corynebacterioides strain DSM 20151 16S ribosomal RNA gene, complete sequence | AF430066 | 1494 | 53972 | ||
| 20218 | Rhodococcus corynebacterioides strain DSM 20151 note copy 1 16S-23S ribosomal RNA intergenic spacer, complete sequence | AF536414 | 365 | 53972 | ||
| 20218 | Rhodococcus corynebacterioides strain DSM 20151 note copy 2 16S-23S ribosomal RNA intergenic spacer, complete sequence | AF536415 | 332 | 53972 | ||
| 20218 | Rhodococcus corynebacterioides strain DSM 20151 note copy 3 16S-23S ribosomal RNA intergenic spacer, complete sequence | AF536416 | 346 | 53972 | ||
| 20218 | Rhodococcus corynebacterioides strain DSM 20151 note copy 4 16S-23S ribosomal RNA intergenic spacer, complete sequence | AF536417 | 362 | 53972 | ||
| 20218 | Rhodococcus corynebacterioides strain DSM 20151 16S ribosomal RNA gene, partial sequence | KF410345 | 1367 | 53972 | ||
| 20218 | Rhodococcus corynebacterioides 16S rRNA gene, type strain DSM 20151T | X80615 | 1477 | 53972 | ||
| 124043 | Rhodococcus corynebacterioides strain DSM 20151 16S ribosomal RNA gene, partial sequence. | MT543221 | 1329 | 53972 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 67770 | 70.2 | genome sequence analysis |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 98.00 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 96.00 | no |
| 125439 | motility | BacteriaNetⓘ | no | 59.80 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 58.20 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 87.18 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 98.85 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 65.21 | no |
| 125438 | aerobic | aerobicⓘ | yes | 92.10 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 94.49 | no |
| 125438 | flagellated | motile2+ⓘ | no | 93.50 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Cell wall channels of Rhodococcus species: identification and characterization of the cell wall channels of Rhodococcus corynebacteroides and Rhodococcus ruber. | Piselli C, Benier L, Koy C, Glocker MO, Benz R. | Eur Biophys J | 10.1007/s00249-022-01599-9 | 2022 | ||
| Variation of the seed endophytic bacteria among plant populations and their plant growth-promoting activities in a wild mustard plant species, Capsella bursa-pastoris. | Choi B, Jeong S, Kim E. | Ecol Evol | 10.1002/ece3.8683 | 2022 | ||
| Enzymology | First report of sepsis caused by Rhodococcus corynebacterioides in a patient with myelodysplastic syndrome. | Kitamura Y, Sawabe E, Ohkusu K, Tojo N, Tohda S. | J Clin Microbiol | 10.1128/jcm.06279-11 | 2012 | |
| Evaluation of Well Designs to Improve Access to Safe and Clean Water in Rural Tanzania. | Kilungo A, Powers L, Arnold N, Whelan K, Paterson K, Young D. | Int J Environ Res Public Health | 10.3390/ijerph15010064 | 2018 | ||
| Screening for Microbial Metal-Chelating Siderophores for the Removal of Metal Ions from Solutions. | Hofmann M, Heine T, Malik L, Hofmann S, Joffroy K, Senges CHR, Bandow JE, Tischler D. | Microorganisms | 10.3390/microorganisms9010111 | 2021 | ||
| Polyclonal B cell activation by cell wall preparations of gram-positive bacteria. In vitro responses of spleen cells obtained from Balb/c, nu/nu, nu/+, C3H/He, C3H/HeJ and hybrid (DBA/N x Balb/c)F1 mice. | Saito-Taki T, Tanabe MJ, Mochizuki H, Matsumoto T, Nakano M, Takada H, Tsujimoto M, Kotani S, Kusumoto S, Shiba T, Yokogawa K, Kawata S. | Microbiol Immunol | 10.1111/j.1348-0421.1980.tb00580.x | 1980 | ||
| Enzymology | A Rhodococcus qsdA-encoded enzyme defines a novel class of large-spectrum quorum-quenching lactonases. | Uroz S, Oger PM, Chapelle E, Adeline MT, Faure D, Dessaux Y. | Appl Environ Microbiol | 10.1128/aem.02014-07 | 2008 | |
| Contractile effects of bacterial cell walls, their enzymatic digests, and muramyl dipeptides on ileal strips from guinea pigs. | Ogawa T, Kotani S, Tsujimoto M, Kusumoto S, Shiba T, Kawata S, Yokogawa K. | Infect Immun | 10.1128/iai.35.2.612-619.1982 | 1982 | ||
| Mitogenic effects of bacterial cell walls, their fragments, and related synthetic compounds on thymocytes and splenocytes of guinea pigs. | Takada H, Tsujimoto M, Kotani S, Kusumoto S, Inage M, Shiba T, Nagao S, Yano I, Kawata S, Yokogawa K. | Infect Immun | 10.1128/iai.25.2.645-652.1979 | 1979 | ||
| Adjuvant activities in production of reaginic antibody by bacterial cell wall peptidoglycan or synthetic N-acetylmuramyl dipeptides in mice. | Ohkuni H, Norose Y, Ohta M, Hayama M, Kimura Y, Tsujimoto M, Kotani S, Shiba T, Kusumoto S, Yokogawa K, Kawata S. | Infect Immun | 10.1128/iai.24.2.313-318.1979 | 1979 | ||
| Functional Genomics Insights Into the Pathogenicity, Habitat Fitness, and Mechanisms Modifying Plant Development of Rhodococcus sp. PBTS1 and PBTS2. | Vereecke D, Zhang Y, Francis IM, Lambert PQ, Venneman J, Stamler RA, Kilcrease J, Randall JJ. | Front Microbiol | 10.3389/fmicb.2020.00014 | 2020 | ||
| Phylogeny | Reclassification of Nocardia corynebacterioides Serrano et al. 1972 (Approved Lists 1980) as Rhodococcus corynebacterioides comb. nov. | Yassin AF, Schaal KP | Int J Syst Evol Microbiol | 10.1099/ijs.0.63529-0 | 2005 | |
| Phylogeny | Nocardiopsis codii sp. nov., and Rhodococcus chondri sp. nov., two novel actinomycetal species isolated from macroalgae collected in the northern Portuguese coast. | Girao M, Lequint Z, Rego A, Costa I, Proenca DN, Morais PV, Carvalho MF. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.006483 | 2024 | |
| Phylogeny | Rhodococcus enclensis sp. nov., a novel member of the genus Rhodococcus. | Dastager SG, Mawlankar R, Tang SK, Krishnamurthi S, Ramana VV, Joseph N, Shouche YS | Int J Syst Evol Microbiol | 10.1099/ijs.0.061390-0 | 2014 | |
| Phylogeny | Rhodococcus kroppenstedtii sp. nov., a novel actinobacterium isolated from a cold desert of the Himalayas, India. | Mayilraj S, Krishnamurthi S, Saha P, Saini HS | Int J Syst Evol Microbiol | 10.1099/ijs.0.63831-0 | 2006 |
| #8575 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20151 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #41205 | ; Curators of the CIP; |
| #53925 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 37877 |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68371 | Automatically annotated from API 50CH acid . |
| #68382 | Automatically annotated from API zym . |
| #118759 | Collection of Institut Pasteur ; Curators of the CIP; CIP 104510 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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BacDive in 2025: the core database for prokaryotic strain data