Nocardia goodfellowii (DSM 45516, KCTC 19986, NRRL B-24833)

Name: Nocardia goodfellowii (DSM 45516, KCTC 19986, NRRL B-24833)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 10830

Type strain

Strain Designation A2012

Culture col. no. DSM 45516 KCTC 19986 NRRL B-24833 A2012 JCM 19958

NCBI tax ID(s) 882446

Special Collections DSMZ JCM KCTC Literature strains

History DSMZ <- N. Sahin, Ondokuz Mayis University, Turkey; A2012 JCM <-- KCTC 19986 <-- N. Sahin A2012. KCTC <- N Sahin, Ondokuz Mayis Univ., Turkey

Links

Nocardia goodfellowii A2012 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from arid soil.

spore-forming Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 403321

KCTC 19986,DSM 45516

@ref 20215

Last LPSN update 2026-05-29 08:27:25

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Nocardiaceae

Genus Nocardia

Species Nocardia goodfellowii

Full scientific name Nocardia goodfellowii Sazak et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
30241	positive	rod-shaped
67771	positive
125438	positive		93.188
125439			90.478
125439	positive		95.46

Pigmentation

30241

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17492	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17492	positive	growth	28
30241	positive	growth	10-37
30241	positive	optimum	28
67770	positive	growth	28
67771	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
30241	positive	optimum	7
30241	positive	growth	05-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30241	aerobe
67771	aerobe
125438	aerobe	90.099
125439	obligate aerobe	98.795

Spore formation

30241

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30241	NaCl	positive	growth	0-4 %

Observation

67770

Observationquinones: MK-8(H₄, ω-cycl)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30241	4853 ChEBI	esculin	+	hydrolysis
30241	28757 ChEBI	fructose	+	carbon source
30241	28260 ChEBI	galactose	+	carbon source
30241	17234 ChEBI	glucose	+	carbon source
30241	17306 ChEBI	maltose	+	carbon source
30241	29864 ChEBI	mannitol	+	carbon source
30241	37684 ChEBI	mannose	+	carbon source
30241	17632 ChEBI	nitrate	+	reduction
30241	17272 ChEBI	propionate	+	carbon source
30241	15963 ChEBI	ribitol	+	carbon source
30241	30911 ChEBI	sorbitol	+	carbon source
30241	30031 ChEBI	succinate	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30241	gelatinase	+
30241	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Condition	#Xerophilic	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
17492	arid soil	Edirne, Lalapasa, Sinakoy	Turkey	TUR	Asia
67770	Soil from Sinanköy	Lalapa?a, Edirne	Turkey	TUR	Asia
67771	From soil, Agricultural estate	Edirne	Turkey	TUR	Europe

Taxonmaps

69479

Global distribution of 16S sequence HQ157183 (>99% sequence identity) for Nocardia goodfellowii from Microbeatlas

Aquatic Samples	18
Soil Samples	120
Animal Samples	9
Plant Samples	14
Total Samples	161

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17492	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1787564v1 assembly for Nocardia goodfellowii DSM 45516	contig	GCA_017875645	882446.3	2917953210	882446	76.36

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17492	Nocardia goodfellowii strain A2012 16S ribosomal RNA gene, partial sequence	HQ157183	1469		882446

GC content

@ref	GC-content (mol%)	Method
17492	70.6	fluorimetric
30241	70.6
67770	70.6	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1787564v1 assembly for Nocardia goodfellowii DSM 45516
NCBI: GCA_017875645

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	95.46	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.80	no
125439	motility	BacteriaNetⓘ	no	90.48	no
125439	spore_formation	BacteriaNetⓘ	yes	69.69	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nocardia goodfellowii strain DSM 45516
PATRIC: 882446.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	93.19	yes
125438	anaerobic	anaerobicⓘ	no	98.60	yes
125438	aerobic	aerobicⓘ	yes	90.10	no
125438	spore-forming	spore-formingⓘ	yes	67.09	yes
125438	thermophilic	thermophileⓘ	no	97.00	yes
125438	flagellated	motile2+ⓘ	no	89.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardia sungurluensis sp. nov., isolated from soil.	Camas M, Veyisoglu A, Sahin N	Int J Syst Evol Microbiol	10.1099/ijs.0.051334-0	2014
Phylogeny	Nocardia goodfellowii sp. nov. and Nocardia thraciensis sp. nov., isolated from soil.	Sazak A, Sahin N, Camas M	Int J Syst Evol Microbiol	10.1099/ijs.0.031559-0	2011

References

#17492	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45516
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26583	IJSEM 1228 2012 ( DOI 10.1099/ijs.0.031559-0 , PubMed 21742817 )
#30241	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26583
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nocardia goodfellowii (DSM 45516, KCTC 19986, NRRL B-24833)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_017875645

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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