Nocardia jiangxiensis 43401 is an aerobe, Gram-positive, rod-shaped bacterium that builds an aerial mycelium and was isolated from the rhizosphere of goose-grass .
Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Mycobacteriales |
| Family Nocardiaceae |
| Genus Nocardia |
| Species Nocardia jiangxiensis |
| Full scientific name Nocardia jiangxiensis Cui et al. 2005 |
| @ref | Forms multicellular complex | Complex name | Complex color | Medium name | |
|---|---|---|---|---|---|
| 69282 | Aerial mycelium | Light ivory (1015) | ISP 2 | ||
| 69282 | Aerial mycelium | Pure white (9010) | ISP 3 | ||
| 69282 | Aerial mycelium | Pure white (9010) | ISP 4 | ||
| 69282 | Aerial mycelium | Cream (9001) | ISP 5 | ||
| 69282 | Aerial mycelium | Cream (9001) | ISP 6 | ||
| 69282 | Aerial mycelium | Pure white (9010) | ISP 7 | ||
| 69282 | Aerial mycelium | suter with tyrosine | |||
| 69282 | Aerial mycelium | suter without tyrosine |
| @ref: | 69282 |
| multimedia content: | DSM_17684_image3.jpeg |
| multimedia.multimedia content: | DSM_17684_image3.jpeg |
| caption: | Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7) |
| intellectual property rights: | Helmholtz-Zentrum für Infektionsforschung GmbH |
| manual_annotation: | 1 |
| @ref: | 69282 |
| multimedia content: | DSM_17684_image4.jpeg |
| multimedia.multimedia content: | DSM_17684_image4.jpeg |
| caption: | Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7) |
| intellectual property rights: | Helmholtz-Zentrum für Infektionsforschung GmbH |
| manual_annotation: | 1 |
| @ref: | 69282 |
| multimedia content: | DSM_17684_image6.jpeg |
| multimedia.multimedia content: | DSM_17684_image6.jpeg |
| caption: | (ISP6, ISP7, SSM+T, SSM-T) |
| intellectual property rights: | Helmholtz-Zentrum für Infektionsforschung GmbH |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 7126 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | Medium recipe at MediaDive | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water | ||
| 40087 | MEDIUM 115 - for Nocardia otitidiscaviarum and Nocardia diaphanozonaria | Distilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (10.000g);Yeast extract (2.000 g);Di Potassium monohydrogenophosphate (0.500 g);L-Asparagine (1.000 g) | |||
| 120349 | CIP Medium 115 | Medium recipe at CIP |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 69282 | NaCl | positive | growth | 0-5 % |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | + | builds acid from | from API 50CH acid |
| 31480 | 22599 ChEBI | arabinose | + | carbon source | |
| 69282 | 22599 ChEBI | arabinose | +/- | growth | |
| 68371 | 18305 ChEBI | arbutin | + | builds acid from | from API 50CH acid |
| 31480 | 17057 ChEBI | cellobiose | + | carbon source | |
| 68371 | 17057 ChEBI | cellobiose | + | builds acid from | from API 50CH acid |
| 69282 | 62968 ChEBI | cellulose | - | growth | |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | + | builds acid from | from API 50CH acid |
| 68379 | 17634 ChEBI | D-glucose | - | fermentation | from API Coryne |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68379 | 16899 ChEBI | D-mannitol | - | fermentation | from API Coryne |
| 68371 | 16899 ChEBI | D-mannitol | + | builds acid from | from API 50CH acid |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68379 | 16988 ChEBI | D-ribose | - | fermentation | from API Coryne |
| 68371 | 16988 ChEBI | D-ribose | + | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | + | builds acid from | from API 50CH acid |
| 68379 | 65327 ChEBI | D-xylose | - | fermentation | from API Coryne |
| 68371 | 65327 ChEBI | D-xylose | + | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 68379 | 4853 ChEBI | esculin | - | hydrolysis | from API Coryne |
| 68371 | 4853 ChEBI | esculin | + | builds acid from | from API 50CH acid |
| 31480 | 28757 ChEBI | fructose | + | carbon source | |
| 69282 | 28757 ChEBI | fructose | +/- | growth | |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 31480 | 28260 ChEBI | galactose | + | carbon source | |
| 68379 | 5291 ChEBI | gelatin | - | hydrolysis | from API Coryne |
| 68371 | 28066 ChEBI | gentiobiose | + | builds acid from | from API 50CH acid |
| 31480 | 17234 ChEBI | glucose | + | carbon source | |
| 69282 | 17234 ChEBI | glucose | + | growth | |
| 31480 | 17754 ChEBI | glycerol | + | carbon source | |
| 68371 | 17754 ChEBI | glycerol | + | builds acid from | from API 50CH acid |
| 68379 | 28087 ChEBI | glycogen | - | fermentation | from API Coryne |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | + | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 31480 | 17716 ChEBI | lactose | + | carbon source | |
| 68379 | 17716 ChEBI | lactose | - | fermentation | from API Coryne |
| 68371 | 17716 ChEBI | lactose | + | builds acid from | from API 50CH acid |
| 31480 | 17306 ChEBI | maltose | + | carbon source | |
| 68379 | 17306 ChEBI | maltose | - | fermentation | from API Coryne |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 31480 | 37684 ChEBI | mannose | + | carbon source | |
| 69282 | 37684 ChEBI | mannose | + | growth | |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | + | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | + | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 31480 | 17268 ChEBI | myo-inositol | + | carbon source | |
| 69282 | 17268 ChEBI | myo-inositol | +/- | growth | |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 68379 | 17632 ChEBI | nitrate | - | reduction | from API Coryne |
| 120349 | 17632 ChEBI | nitrate | + | reduction | |
| 120349 | 16301 ChEBI | nitrite | - | reduction | |
| 68371 | 0 ChEBI | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid |
| 68371 | 0 ChEBI | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid |
| 31480 | 16634 ChEBI | raffinose | + | carbon source | |
| 69282 | 16634 ChEBI | raffinose | - | growth | |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 69282 | 26546 ChEBI | rhamnose | - | growth | |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 31480 | 33942 ChEBI | ribose | + | carbon source | |
| 68371 | 17814 ChEBI | salicin | + | builds acid from | from API 50CH acid |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 31480 | 17992 ChEBI | sucrose | + | carbon source | |
| 68379 | 17992 ChEBI | sucrose | - | fermentation | from API Coryne |
| 69282 | 17992 ChEBI | sucrose | +/- | growth | |
| 68371 | 17992 ChEBI | sucrose | + | builds acid from | from API 50CH acid |
| 31480 | 27082 ChEBI | trehalose | + | carbon source | |
| 68371 | 27082 ChEBI | trehalose | + | builds acid from | from API 50CH acid |
| 68371 | 32528 ChEBI | turanose | + | builds acid from | from API 50CH acid |
| 68379 | 16199 ChEBI | urea | - | hydrolysis | from API Coryne |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| 31480 | 18222 ChEBI | xylose | + | carbon source | |
| 69282 | 18222 ChEBI | xylose | + | growth |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 120349 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68379 | alkaline phosphatase | - | 3.1.3.1 | from API Coryne |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68379 | alpha-glucosidase | - | 3.2.1.20 | from API Coryne |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 68379 | beta-galactosidase | - | 3.2.1.23 | from API Coryne |
| 68379 | beta-glucosidase | - | 3.2.1.21 | from API Coryne |
| 68379 | beta-glucuronidase | - | 3.2.1.31 | from API Coryne |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 31480 | catalase | + | 1.11.1.6 | |
| 120349 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 68379 | gelatinase | - | from API Coryne | |
| 68382 | lipase (C 14) | - | from API zym | |
| 120349 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API Coryne |
| 120349 | ornithine decarboxylase | - | 4.1.1.17 | |
| 120349 | oxidase | - | ||
| 68379 | pyrazinamidase | - | 3.5.1.B15 | from API Coryne |
| 68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API Coryne |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 120349 | urease | - | 3.5.1.5 | |
| 68379 | urease | - | 3.5.1.5 | from API Coryne |
| 68382 | valine arylamidase | - | from API zym |
| @ref | Control | Alkaline phosphatase | Esterase (C 4) | 2-naphtyl caprylateEsterase Lipase (C 8) | Lipase (C 14) | L-leucyl-2-naphthylamideLeucine arylamidase | L-valyl-2-naphthylamideValine arylamidase | L-cystyl-2-naphthylamideCystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69282 | not determinedn.d. | - | +/- | + | - | +/- | - | - | - | - | +/- | +/- | - | - | - | - | +/- | - | - | - | |
| 120349 | - | - | + | + | - | - | - | - | - | - | + | + | - | - | - | + | + | - | - | - |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120349 | not determinedn.d. | + | - | - | + | + | + | - | - | - | + | + | + | + | - | - | - | - | + | - | +/- | + | + | + | + | + | + | + | + | + | + | + | + | - | - | - | - | - | - | + | + | - | + | - | - | - | - | +/- | - | - |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) | |
| #Host Body-Site | #Plant | #Rhizosphere |
| @ref | Sample type | Host species | Geographic location | Country | Country ISO 3 Code | Continent | |
|---|---|---|---|---|---|---|---|
| 7126 | the rhizosphere of goose-grass (Eleusine indica) | Eleusine indica | Jiangxi Province, Wushan | China | CHN | Asia | |
| 67770 | Rhizosphere soil (about pH 3.5) of goose-grass (Eleusine indica) growing next to a copper mine | Eleusine indica | Wushan, Jiangxi Province | China | CHN | Asia | |
| 120349 | Environment, Rhizosphere soil | Wushan, Jiangxi | China | CHN | Asia |
Global distribution of 16S sequence GQ376175 (>99% sequence identity) for Nocardia from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | ASM30861v1 assembly for Nocardia jiangxiensis NBRC 101359 | contig | 1206731 | 41.16 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 67770 | 66.8 | genome sequence analysis |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 94.29 | no |
| 125439 | motility | BacteriaNetⓘ | no | 90.22 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 90.92 | no |
| 125439 | spore_formation | BacteriaNetⓘ | yes | 53.56 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 89.82 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 95.65 | no |
| 125438 | spore-forming | spore-formingⓘ | yes | 59.35 | no |
| 125438 | aerobic | aerobicⓘ | yes | 85.74 | no |
| 125438 | thermophilic | thermophileⓘ | no | 95.90 | no |
| 125438 | flagellated | motile2+ⓘ | no | 89.50 | yes |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Updated Review on Nocardia Species: 2006-2021. | Traxler RM, Bell ME, Lasker B, Headd B, Shieh WJ, McQuiston JR. | Clin Microbiol Rev | 10.1128/cmr.00027-21 | 2022 | ||
| Phylogeny | Phylogenetic and Functional Characterization of Culturable Endophytic Actinobacteria Associated With Camellia spp. for Growth Promotion in Commercial Tea Cultivars. | Borah A, Thakur D. | Front Microbiol | 10.3389/fmicb.2020.00318 | 2020 | |
| Genetics | Genome insights into the pharmaceutical and plant growth promoting features of the novel species Nocardia alni sp. nov. | Nouioui I, Ha SM, Baek I, Chun J, Goodfellow M. | BMC Genomics | 10.1186/s12864-021-08257-y | 2022 | |
| Phylogeny | Nocardia albiluteola sp. nov., a novel lignin-degrading actinobacterium isolated from rhizosphere soil of pumpkin. | Shan Q, Han C, Zhao J, Yu B, Jiang M, Liu T, Wang X, Xiang W | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005305 | 2022 | |
| Phylogeny | Nocardia coffeae sp. nov., an endophytic actinobacterium isolated from the root of Coffea arabica (L.). | Nammali A, Duangupama T, Suriyachadkun C, Tanasupawat S, Thawai C | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005180 | 2022 | |
| Phylogeny | Nocardia zhihengii sp. nov., an actinobacterium isolated from rhizosphere soil of Psammosilene tunicoides. | Huang MJ, Xiao M, Rao MPN, Cheng T, Yang YY, Alkhalifah DHM, Hozzein WN, Huang HQ, Li WJ | Antonie Van Leeuwenhoek | 10.1007/s10482-018-1107-8 | 2018 | |
| Phylogeny | Nocardia rayongensis sp. nov., isolated from Thai peat swamp forest soil. | Tanasupawat S, Phongsopitanun W, Suwanborirux K, Ohkuma M, Kudo T | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000971 | 2016 | |
| Phylogeny | Nocardia jiangxiensis sp. nov. and Nocardia miyunensis sp. nov., isolated from acidic soils. | Cui Q, Wang L, Huang Y, Liu Z, Goodfellow M | Int J Syst Evol Microbiol | 10.1099/ijs.0.63644-0 | 2005 |
| #7126 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17684 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #27778 | IJSEM 1921 2005 ( DOI 10.1099/ijs.0.63644-0 , PubMed 16166688 ) |
| #31480 | Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27778 |
| #40087 | ; Curators of the CIP; |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68371 | Automatically annotated from API 50CH acid . |
| #68379 | Automatically annotated from API Coryne . |
| #68382 | Automatically annotated from API zym . |
| #69282 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #120349 | Collection of Institut Pasteur ; Curators of the CIP; CIP 109010 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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