Nocardia lijiangensis (DSM 44933, CCTCC AA 204005, KCTC 19028)

Name: Nocardia lijiangensis (DSM 44933, CCTCC AA 204005, KCTC 19028)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 10801

Type strain

Culture col. no. DSM 44933 CCTCC AA 204005 KCTC 19028 YIM 33378 NBRC 108240 2 more

NCBI tax ID(s) 1210083 299618

Special Collections DSMZ JCM KCTC

History <- W.-J. Li <- CCTCC <- KCTC <- P. Xu KCTC 19028 <-- W.-J. Li YIM 33378.

Links

Nocardia lijiangensis DSM 44933 is an aerobe, mesophilic prokaryote that was isolated from soil.

aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 133437

NBRC 108240,KCTC 19028,DSM 44933,JCM 13592

@ref 20215

Last LPSN update 2026-02-09 11:20:21

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Nocardiaceae

Genus Nocardia

Species Nocardia lijiangensis

Full scientific name Nocardia lijiangensis Xu et al. 2006

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	92.082
125439		93.2
125439	positive	99.7

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
12103	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
12103	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
12103	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
12103	aerobe
125438	aerobe	90.602
125439	obligate aerobe	98.6

Observation

67770

Observationquinones: MK-8(H₄, ω-cycl), MK-8(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	gelatinase	-		from API 20NE
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68382	trypsin	-	3.4.21.4	from API zym
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
12103	-	+/-	+/-	+/-	-	+	-	-	-	-	+	-	-	-	-	+	+	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
12103	+	-	-	-	-	+	-	+	+	+	+/-	+	+	+	+	-	+	+	+/-	+/-	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
12103	soil	Yunnan Province	China	CHN	Asia
67770	Soil	Lijiang, Yunnan Province	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence GQ376177 (>99% sequence identity) for Nocardia from Microbeatlas

Aquatic Samples	3
Soil Samples	20
Animal Samples	5
Plant Samples	2
Total Samples	30

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
12103	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM161304v1 assembly for Nocardia lijiangensis NBRC 108240	contig	GCA_001613045	1210083.4	2731957741	1210083	30.54

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Nocardia lijiangensis 16S ribosomal RNA gene, partial sequence	GQ376177	1441		299618
12103	Nocardia lijiangensis strain YIM 33378 16S ribosomal RNA gene, partial sequence	AY779043	1513		299618

GC content

@ref	GC-content (mol%)	Method
12103	65.4
67770	65.4	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Nocardia lijiangensis NBRC 108240
NCBI: GCA_001613045

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.60	no
125439	gram_stain	BacteriaNetⓘ	positive	99.70	no
125439	motility	BacteriaNetⓘ	no	93.20	no
125439	spore_formation	BacteriaNetⓘ	yes	80.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nocardia lijiangensis NBRC 108240
PATRIC: 1210083.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.08	no
125438	anaerobic	anaerobicⓘ	no	96.43	yes
125438	spore-forming	spore-formingⓘ	yes	55.84	no
125438	aerobic	aerobicⓘ	yes	90.60	yes
125438	thermophilic	thermophileⓘ	no	95.00	no
125438	flagellated	motile2+ⓘ	no	89.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Cross-Bioaugmentation Among Four Remote Soil Samples Contaminated With Oil Exerted Just Inconsistent Effects on Oil-Bioremediation.	Al-Mailem DM, Kansour MK, Radwan SS.	Front Microbiol	10.3389/fmicb.2019.02827	2019
Phylogeny	Nocardia arizonensis sp. nov., obtained from human respiratory specimens.	Lasker BA, Bell M, Klenk HP, Schumann P, Brown JM.	Antonie Van Leeuwenhoek	10.1007/s10482-015-0566-4	2015
Phylogeny	Nocardia amikacinitolerans sp. nov., an amikacin-resistant human pathogen.	Ezeoke I, Klenk HP, Potter G, Schumann P, Moser BD, Lasker BA, Nicholson A, Brown JM.	Int J Syst Evol Microbiol	10.1099/ijs.0.039990-0	2013
Phylogeny	Nocardia lijiangensis sp. nov., a novel actinomycete strain isolated from soil in China.	Xu P, Li WJ, Tang SK, Jiang Y, Gao HY, Xu LH, Jiang CL	Syst Appl Microbiol	10.1016/j.syapm.2005.11.009	2005

References

#12103	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44933
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nocardia lijiangensis (DSM 44933, CCTCC AA 204005, KCTC 19028)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001613045

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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