Bacillus atrophaeus (DSM 7264, ATCC 49337, NRRL NRS-213)

Name: Bacillus atrophaeus (DSM 7264, ATCC 49337, NRRL NRS-213)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1077

Type strain

Culture col. no. DSM 7264 ATCC 49337 NRRL NRS-213 CCUG 28524 JCM 9070 6 more

NCBI tax ID(s) 1220587 1452

Special Collections DSMZ CCUG JCM KCTC CIP Literature strains

History <- NRRL <- NRS, 213 ("B. subtilis var. niger") NRRL NRS-213 <-- N. R. Smith NRS-213. CIP <- 2001, DSMZ <- NRRL <- NRS, Bacillus subtilis var. niger

Links

Bacillus atrophaeus DSM 7264 is an aerobe, spore-forming, mesophilic prokaryote that forms circular colonies and has a dark brown pigmentation.

pigmented colony-forming rod-shaped motile Gram-positive spore-forming mesophilic aerobe 16S sequence genome sequence

Name and taxonomic classification

SI-ID 8286

LMG 16797,ATCC 49337,IFO 15539,JCM 9070,NCIMB 12899,NRRL NRS-213,DSM 7264,CCUG 28524,KCTC 3701,CIP 107159,NBRC 15539,BCRC 17123,CCRC 17123

@ref 20215

Last LPSN update 2025-12-16 09:47:01

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Bacillus

Species Bacillus atrophaeus

Full scientific name Bacillus atrophaeus Nakamura 1989

BacDive ID	Other strains from **Bacillus atrophaeus** (13)	Type strain
1074	B. atrophaeus 1221A, NRS-1221 A, DSM 675, ATCC 9372, CIP ...
1075	B. atrophaeus DSM 2277, ATCC 51189, CIP 103406, IAM 1633, ...
1076	B. atrophaeus DSM 5551, NRRL NRS-253, NRS 1936, NRS 253
1078	B. atrophaeus ES2-W11b1, DSM 30650
1079	B. atrophaeus ES2-AirT4-1, DSM 30662
22920	B. atrophaeus P4/15_1, DSM 30923
137339	B. atrophaeus CIP 77.17
138641	B. atrophaeus 733, CIP 52.79
146601	B. atrophaeus CCUG 31558
151805	B. atrophaeus CCUG 44943
151806	B. atrophaeus CCUG 44944
155923	B. atrophaeus CCUG 59659 B
156339	B. atrophaeus CCUG 61211

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
23299	positive	2.0-4.0 µm	0.5-1.0 µm	rod-shaped
116542	positive			rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Hemolysis ability
23299	1-2 mm	opaque	circular	2 days
116542					1

Pigmentation

@ref	Production	Color
23299		dark brown

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
3083	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
36886	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116542	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
3083	positive	growth	30	mesophilic
23299	positive	maximum	50-55	thermophilic
23299	positive	minimum	5-10	psychrophilic
23299	positive	optimum	28-30	mesophilic
36886	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic
116542	positive	growth	22-37
116542	negative	growth	10
116542	negative	growth	45
116542	negative	growth	55

Culture pH

@ref	Ability	Type	PH
23299	positive	growth	5.6-5.7
116542	positive	growth	6

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
23299	aerobe
116542	obligate aerobe

Spore formation

@ref	Spore description	Type of spore	Spore formation	Confidence
23299	ellipsoidal	endospore
125438				95.757

Halophily

@ref	Salt	Growth	Tested relation	Concentration
23299	NaCl	positive	growth	7 %
116542	NaCl	positive	growth	0-10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
23299	29016 ChEBI	arginine	-	degradation
23299		casein	+	degradation
23299		casein	+	hydrolysis
23299	17057 ChEBI	cellobiose	+/-	builds acid from
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
23299	16947 ChEBI	citrate	+	assimilation
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
23299	15824 ChEBI	D-fructose	-	builds gas from
23299	15824 ChEBI	D-fructose	+	builds acid from
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
23299	12936 ChEBI	D-galactose	+/-	builds acid from
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
23299	17634 ChEBI	D-glucose	-	builds gas from
23299	17634 ChEBI	D-glucose	+	builds acid from
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
23299	16024 ChEBI	D-mannose	+/-	builds acid from
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
23299	16988 ChEBI	D-ribose	+/-	builds acid from
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
23299	65327 ChEBI	D-xylose	-	builds gas from
23299	65327 ChEBI	D-xylose	+	builds acid from
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
23299		egg yolk	-	degradation
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
116542	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
116542	606565 ChEBI	hippurate	-	hydrolysis
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
23299	30849 ChEBI	L-arabinose	-	builds gas from
23299	30849 ChEBI	L-arabinose	+	builds acid from
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
23299	62345 ChEBI	L-rhamnose	+/-	builds acid from
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
23299	17716 ChEBI	lactose	-	fermentation
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
23299	61995 ChEBI	lecithin	-	degradation
23299	25094 ChEBI	lysine	-	degradation
23299	17306 ChEBI	maltose	+/-	builds acid from
23299	29864 ChEBI	mannitol	-	builds gas from
23299	29864 ChEBI	mannitol	+	builds acid from
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
23299	28053 ChEBI	melibiose	-	fermentation
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
23299	17632 ChEBI	nitrate	+	reduction
116542	17632 ChEBI	nitrate	+	reduction
116542	17632 ChEBI	nitrate	-	respiration
116542	16301 ChEBI	nitrite	-	reduction
23299	18257 ChEBI	ornithine	-	degradation
23299	28044 ChEBI	phenylalanine	-	degradation
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
23299	17272 ChEBI	propionate	-	assimilation
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
23299	17814 ChEBI	salicin	-	builds gas from
23299	17814 ChEBI	salicin	+	builds acid from
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
23299	30911 ChEBI	sorbitol	+/-	builds acid from
23299	28017 ChEBI	starch	+	hydrolysis
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
23299	17992 ChEBI	sucrose	-	builds gas from
23299	17992 ChEBI	sucrose	+	builds acid from
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
23299	27082 ChEBI	trehalose	-	builds gas from
23299	27082 ChEBI	trehalose	+	builds acid from
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
23299	53426 ChEBI	tween 80	-	degradation
23299	18186 ChEBI	tyrosine	-	degradation
23299	16199 ChEBI	urea	-	degradation
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite
23299	15688 ChEBI	acetoin
23299	16016 ChEBI	dihydroxyacetone
23299	16136 ChEBI	hydrogen sulfide
23299	35581 ChEBI	indole
116542	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
23299	15688 ChEBI	acetoin	+
116542	15688 ChEBI	acetoin	+
116542	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116542	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
116542	amylase	+
68382	beta-galactosidase	-	3.2.1.23	from API zym
116542	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116542	caseinase	+	3.4.21.50
23299	catalase	+	1.11.1.6
116542	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
23299	cytochrome oxidase	-	1.9.3.1
116542	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
116542	gamma-glutamyltransferase	+	2.3.2.2
116542	gelatinase	+/-
116542	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
116542	lipase	-
68382	lipase (C 14)	-		from API zym
116542	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
116542	ornithine decarboxylase	-	4.1.1.17
116542	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
116542	tween esterase	-
116542	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116542	-	+	+	+	-	+	-	-	-	-	+	-	-	-	-	+	+	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
116542	not determinedn.d.	+	-	-	-	+	+	-	-	-	-	+	+	+	-	-	-	-	+	-	-	-	+/-	-	+	+	+	-	+/-	-	-	+	+	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
116542	not determinedn.d.	+	+	-	+	+	-	-	+	-	+	+	-	-	-	-	+	+	+	+	+	+	-	+	-	-	-	-	-	-	-	-	+	+	+	+	+	+	-	-	-	-	+	-	+	+	-	-	-	-	+	+	-	-	+	-	-	-	-	-	+	+	-	+	-	+	+	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	+	-	-	-	+	+	+	+	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
3083	soil	Colorado
49270	Soil	Colorado	USA	USA	North America
67770	Soil	CO	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence AB021181 (>99% sequence identity) for Bacillus from Microbeatlas

Aquatic Samples	40
Soil Samples	16
Animal Samples	61
Plant Samples	16
Total Samples	133

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3083	1	Risk group (German classification) According to TRBA 466
116542	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM158433v1 assembly for Bacillus atrophaeus NRRL NRS 213	scaffold	GCA_001584335		2728369559	1452	74.74
67770	ASM159192v1 assembly for Bacillus atrophaeus NBRC 15539	contig	GCA_001591925	1220587.3	2731957673	1220587	72.03

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Bacillus atrophaeus strain BCRC 17123 16S ribosomal RNA gene, partial sequence	EF433409	1468	1452
20218	Bacillus atrophaeus gene for 16S ribosomal RNA	AB021181	1515	1452
20218	Bacillus atrophaeus gene for 16S rRNA, partial sequence, strain: NBRC 15539	AB363731	1475	1452
20218	B.atrophaeus 16S ribosomal RNA	X60607	1427	1452
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT279976	1071	1452
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT279978	983	168469
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT279979	987	155322
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT279980	1008	156977
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT279981	979	2026194
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT279982	1359	61645
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT279983	1393	244366
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT279984	1429	59846
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT279985	1421	1193713
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT279986	933	487
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT279987	851	487
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT279988	810	487
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT279989	830	487
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT279990	910	192066
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT279991	778	487
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT279992	867	192066
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT279993	816	487
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT279994	798	487
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT279995	839	192066
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT279996	969	487
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT279997	834	487
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT279998	1338	521013
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280006	889	47878
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280007	836	306
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280008	890	78544
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280009	885	76761
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280010	883	76761
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280011	732	306
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280029	1455	1920299
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280030	1396	1360
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280031	1399	1360
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280032	1314	1613
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280034	1492	1597
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280151	1368	1351
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280152	1463	1280
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280153	1411	562
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280154	885	566027
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280155	615	169480
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280156	604	1710
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280157	637	226506
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280158	640	1524260
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280159	606	1399
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280160	614	79883
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280161	608	450367
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280162	616	372463
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280163	615	1480615
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280164	639	1343159
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280165	637	89184
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280166	638	89184
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280167	637	2282382
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280168	616	2282382
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280169	615	2282382
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280170	616	2282382
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280171	616	2282382
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280172	610	1123755
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280173	610	1123755
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280174	617	266951
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280175	640	266951
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280176	617	266951
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280177	642	266951
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280178	609	266951
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280179	609	266951
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280180	608	266951
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280181	609	266951
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280182	794	266951
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280183	640	266951
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280184	642	266951
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280185	617	267135
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280186	608	680279
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280187	607	1656094
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280188	607	1656094
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280189	640	1656094
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280190	616	1673741
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280191	637	182141
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280192	607	260364
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280193	638	1137284
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280194	615	685
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280195	616	685
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280196	625	685
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280197	615	685
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280198	1479	29391
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280200	1454	2049030
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280201	1442	674054
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280202	1402	82996
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280203	1405	75612
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280204	1389	587753
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280205	1396	359110
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280206	1421	28090
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280207	1448	33033
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280208	1486	1926307
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280209	1434	199
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280210	1451	29339
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280211	1478	76860
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280212	1455	28131
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280213	1478	1328
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280214	1478	76860
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280215	1485	1926307
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280216	1485	39777
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280217	1463	192066
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280218	1486	1926307
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280220	1477	1328
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280221	1464	539
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280222	1470	1306
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280224	1479	1302
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280225	1469	1306
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280229	1475	1292
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280230	1471	1306
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280231	1483	1655
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280232	699	1176240
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280233	690	1176240
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280234	279	115561
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280235	211	664683
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280236	533	1176240
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280237	454	1176240
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280238	333	1176240
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280239	196	1176240
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280240	228	115561
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280241	534	1176240
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280242	395	1176240
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280243	549	1176240
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280244	227	115561
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280245	356	115561
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280246	216	664683
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280247	511	79885
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280248	405	419597
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280249	450	520043
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280250	321	1684789
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280251	341	520043
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280252	519	1517558
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280253	639	1517558
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280254	799	1517558
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280255	770	1517558
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280256	354	1684789
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280257	360	1684789
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280258	311	1684789
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280259	220	1883414
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280260	695	1517558
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280261	688	1517558
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280262	503	1379154
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280263	420	1379154
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280264	518	1464123
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280265	597	1517558
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280266	283	1925020
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280267	498	1925020
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280268	328	33932
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280269	710	1517558
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280270	418	1517558
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280271	518	1464123
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280272	390	1468413
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280273	499	1468413
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280274	506	1925020
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280275	508	1983721
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280276	639	427920
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280277	597	33932
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280278	505	33932
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280279	650	33932
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280280	324	1379154
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280281	332	427920
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280282	198	1684789
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280283	418	1517558
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280284	247	1848459
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280285	220	1684789
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280286	337	1379154
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280287	274	2017483
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280288	306	1517558
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280289	348	1684789
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280290	349	1684789
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280291	430	182710
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280292	499	182710
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280293	227	1379154
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280294	300	182710
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280295	170	2017483
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280296	658	182710
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280297	310	1602943
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280298	305	1602943
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280299	429	117606
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280300	499	1602943
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280301	428	2042704
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280302	657	1176240
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280303	672	1930622
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280304	496	2042704
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280305	744	1176240
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280306	436	1176240
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280307	1466	135083
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280308	1454	28131
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280309	1482	29317
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280310	1478	1328
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280311	1440	44737
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280312	1447	102148
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280313	1466	135082
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280314	1448	33033
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280316	1479	69823
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280317	672	225991
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280318	627	363952
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280319	642	363952
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280320	992	1931
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280603	1031	1232866
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280698	996	2293719
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280703	1000	458836
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT280791	1016	1278643
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT281269	1027	2026199
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MT281310	964	1869338
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	OQ876677	1441	1452
124043	Bacillus atrophaeus strain NRRL NRS-213 16S ribosomal RNA gene, partial sequence.	EU138516	1168	1452
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MN840037	1410	1452
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	KY287785	1284	1452
124043	Bacillus atrophaeus strain JCM 9070 16S ribosomal RNA gene, partial sequence.	MW198128	601	1452
124043	Bacillus atrophaeus strain NBRC 15539 16S ribosomal RNA gene, partial sequence.	MH283882	831	1452

GC content

@ref	GC-content (mol%)	Method
23299	41-43	Buoyant density centrifugation (BD)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bacillus atrophaeus NRRL NRS 213
NCBI: GCA_001584335

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	72.60	no
125439	gram_stain	BacteriaNetⓘ	variable	80.60	no
125439	motility	BacteriaNetⓘ	yes	63.40	no
125439	spore_formation	BacteriaNetⓘ	yes	75.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacillus atrophaeus NBRC 15539
PATRIC: 1220587.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	84.93	no
125438	anaerobic	anaerobicⓘ	no	89.90	no
125438	spore-forming	spore-formingⓘ	yes	95.76	yes
125438	aerobic	aerobicⓘ	yes	74.91	yes
125438	thermophilic	thermophileⓘ	no	95.73	yes
125438	flagellated	motile2+ⓘ	yes	88.90	no

Literature

Topic	Title	Authors	Journal	DOI	Year
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	Profiling for Bioactive Peptides and Volatiles of Plant Growth Promoting Strains of the Bacillus subtilis Complex of Industrial Relevance.	Mulner P, Schwarz E, Dietel K, Junge H, Herfort S, Weydmann M, Lasch P, Cernava T, Berg G, Vater J.	Front Microbiol	10.3389/fmicb.2020.01432	2020
	Development and initial testing of an active low-power, ferroelectric film-based bioaerosol sampler.	Grogan SNCM, Han TT, Mainelis G.	Aerosol Sci Technol	10.1080/02786826.2022.2128985	2022
	Application of ATP-based bioluminescence for bioaerosol quantification: effect of sampling method.	Han T, Wren M, DuBois K, Therkorn J, Mainelis G.	J Aerosol Sci	10.1016/j.jaerosci.2015.08.003	2015
	Inactivation of Pure Bacterial Biofilms by Impaction of Aerosolized Consumer Products Containing Nanoparticulate Metals.	Therkorn J, Calderon L, Cartledge B, Thomas N, Majestic B, Mainelis G.	Environ Sci Nano	10.1039/c7en00972k	2018
Metabolism	Accuracy, precision, and method detection limits of quantitative PCR for airborne bacteria and fungi.	Hospodsky D, Yamamoto N, Peccia J.	Appl Environ Microbiol	10.1128/aem.01240-10	2010
Enzymology	Release of free DNA by membrane-impaired bacterial aerosols due to aerosolization and air sampling.	Zhen H, Han T, Fennell DE, Mainelis G.	Appl Environ Microbiol	10.1128/aem.02859-13	2013
Enzymology	Development of quantitative real-time PCR assays for detection and quantification of surrogate biological warfare agents in building debris and leachate.	Saikaly PE, Barlaz MA, de Los Reyes FL.	Appl Environ Microbiol	10.1128/aem.00779-07	2007
	Human occupancy as a source of indoor airborne bacteria.	Hospodsky D, Qian J, Nazaroff WW, Yamamoto N, Bibby K, Rismani-Yazdi H, Peccia J.	PLoS One	10.1371/journal.pone.0034867	2012
Enzymology	Size-resolved emission rates of airborne bacteria and fungi in an occupied classroom.	Qian J, Hospodsky D, Yamamoto N, Nazaroff WW, Peccia J.	Indoor Air	10.1111/j.1600-0668.2012.00769.x	2012
	Omics insights into Bacillus velezensis LMY3-5 defense against Botryosphaeria dothidea in kiwifruit.	Ren C, Liu Y, Su W, Han Z, Wu D, Li W.	Front Microbiol	10.3389/fmicb.2025.1633015	2025
Genetics	Bacillus cabrialesii subsp. cabrialesii Strain TE5: A Promising Biological Control Bacterium Against the Causal Agent of Spot Blotch in Wheat.	Campos-Avelar I, Garcia Jaime MF, Morales Sandoval PH, Parra-Cota FI, de Los Santos Villalobos S.	Plants (Basel)	10.3390/plants14020209	2025
	Draft genome sequence data of a chromium reducing bacterium, Bacillus licheniformis strain KNP.	Arora PK, Mishra R, Omar RA, Saroj RS, Srivastava A, Garg SK, Singh VP.	Data Brief	10.1016/j.dib.2020.106640	2021
Genetics	Improving Beneficial Traits in Bacillus cabrialesii subsp. cabrialesii TE3^T through UV-Induced Genomic Changes.	Morales Sandoval PH, Ortega Urquieta ME, Valenzuela Ruiz V, Montanez Acosta K, Campos Castro KA, Parra Cota FI, Santoyo G, de Los Santos Villalobos S.	Plants (Basel)	10.3390/plants13182578	2024
	Optimisation of Laccase Activity From Bacillus atrophaeus Using Response Surface Methodology: A Proof-Of-Concept Dye Decolourisation Study.	Kocak K, Altin Yavuz A, Berberler S, Filik Iscen C.	Environ Microbiol Rep	10.1111/1758-2229.70138	2025
	Screening and Characterization of Marine Bacillus atrophaeus G4 Protease and Its Application in the Enzymatic Hydrolysis of Sheep (Ovis aries) Placenta for the Preparation of Antioxidant Peptides.	Wang W, Peng G, Sun J, Jiang C, Hao J, Zhang X.	Molecules	10.3390/molecules30102217	2025
	New Occurrence of Nigrospora oryzae Causing Leaf Blight in Ginkgo biloba in China and Biocontrol Screening of Endophytic Bacteria.	Tao Y, Yang C, Yu S, Fu F, Dai T.	Microorganisms	10.3390/microorganisms12112125	2024
	Deciphering the antiviral nature of endophytic Bacillus spp. against groundnut bud necrosis virus in cowpea and tomato.	Gayathri M, Sharanya R, Renukadevi P, Nakkeeran S, Saranya N, Varanavasiappan S, Raveendran M, Suhail A, Alkahtani S.	Front Microbiol	10.3389/fmicb.2024.1410677	2024
	Bt GS57 Interaction With Gut Microbiota Accelerates Spodoptera exigua Mortality.	Li Y, Zhao D, Wu H, Ji Y, Liu Z, Guo X, Guo W, Bi Y.	Front Microbiol	10.3389/fmicb.2022.835227	2022
	Microbial occurrence and antibiotic resistance in ready-to-go food items.	Cole ML, Singh OV.	J Food Sci Technol	10.1007/s13197-018-3180-4	2018
Genetics	Genomic insights into the taxonomic status and bioactive gene cluster profiling of Bacillus velezensis RVMD2 isolated from desert rock varnish in Ma'an, Jordan.	Alnaimat SM, Abushattal S, Dmour SM, Al-Awaida WJ, Ayyash AM, Goh KW.	PLoS One	10.1371/journal.pone.0319345	2025
	Diversity, distribution, and antagonistic activities of rhizobacteria of Panax notoginseng.	Fan ZY, Miao CP, Qiao XG, Zheng YK, Chen HH, Chen YW, Xu LH, Zhao LX, Guan HL.	J Ginseng Res	10.1016/j.jgr.2015.05.003	2016
	Bacterial and fungal bioburden reduction on material surfaces using various sterilization techniques suitable for spacecraft decontamination.	Kimura S, Ishikawa S, Hayashi N, Fujita K, Inatomi Y, Suzuki S.	Front Microbiol	10.3389/fmicb.2023.1253436	2023
	An efficient direct screening system for microorganisms that activate plant immune responses based on plant-microbe interactions using cultured plant cells.	Kurokawa M, Nakano M, Kitahata N, Kuchitsu K, Furuya T.	Sci Rep	10.1038/s41598-021-86560-0	2021
	Antimicrobial Potential of Secondary Metabolites Produced by Bacillus sp. and Their Gas Chromatography (GC)-Mass Spectrometry (MS) Analysis.	Sujitha JWR, Senthilkumar D, Nandhagopal M.	Cureus	10.7759/cureus.70472	2024
	Reduced fungal protein acetylation mediates the antimicrobial activity of a rhizosphere bacterium against a phytopathogenic fungus.	Zhang YC, Zhan X, Chen JY, Yu DT, Zhang T, Zhang H, Duan CG.	Nat Commun	10.1038/s41467-025-60870-7	2025
Metabolism	Production of itaconic acid in Escherichia coli expressing recombinant alpha-amylase using starch as substrate.	Okamoto S, Chin T, Nagata K, Takahashi T, Ohara H, Aso Y.	J Biosci Bioeng	10.1016/j.jbiosc.2014.10.021	2015
	Anaerobic solid-state fermentation with Bacillus subtilis for digesting free gossypol and improving nutritional quality in cottonseed meal.	Li J, Gao T, Hao Z, Guo X, Zhu B.	Front Nutr	10.3389/fnut.2022.1017637	2022
	Examination of electron stains as a substitute for uranyl acetate for the ultrathin sections of bacterial cells.	Yamaguchi K, Suzuki K, Tanaka K.	J Electron Microsc (Tokyo)	10.1093/jmicro/dfp045	2010
	Effect of Chronic Consumption of Sweeteners on Microbiota and Immunity in the Small Intestine of Young Mice.	Martinez-Carrillo BE, Rosales-Gomez CA, Ramirez-Duran N, Resendiz-Albor AA, Escoto-Herrera JA, Mondragon-Velasquez T, Valdes-Ramos R, Castillo-Cardiel A.	Int J Food Sci	10.1155/2019/9619020	2019
	Dry-Caribbean Bacillus spp. Strains Ameliorate Drought Stress in Maize by a Strain-Specific Antioxidant Response Modulation.	Moreno-Galvan A, Romero-Perdomo FA, Estrada-Bonilla G, Meneses CHSG, Bonilla RR.	Microorganisms	10.3390/microorganisms8060823	2020
	Compilation of small ribosomal subunit RNA structures.	Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R.	Nucleic Acids Res	10.1093/nar/21.13.3025	1993
Phylogeny	Identification of bacterial spores using statistical analysis of Fourier transform infrared photoacoustic spectroscopy data.	Thompson SE, Foster NS, Johnson TJ, Valentine NB, Amonette JE	Appl Spectrosc	10.1366/000370203322258832	2003
Biotechnology	Effect of microorganism characteristics on leak size critical to predicting package sterility.	Keller S, Marcy J, Blakistone B, Hackney C, Carter WH, Lacy G	J Food Prot	10.4315/0362-028x-66.9.1716	2003
Phylogeny	An algorithm for automated bacterial identification using matrix-assisted laser desorption/ionization mass spectrometry.	Jarman KH, Cebula ST, Saenz AJ, Petersen CE, Valentine NB, Kingsley MT, Wahl KL	Anal Chem	10.1021/ac990832j	2000
Pathogenicity	Role of pigmentation in protecting Bacillus sp. endospores against environmental UV radiation.	Moeller R, Horneck G, Facius R, Stackebrandt E	FEMS Microbiol Ecol	10.1016/j.femsec.2004.08.008	2005
Phylogeny	Detection of molecular diversity in Bacillus atrophaeus by amplified fragment length polymorphism analysis.	Burke SA, Wright JD, Robinson MK, Bronk BV, Warren RL	Appl Environ Microbiol	10.1128/AEM.70.5.2786-2790.2004	2004
Phylogeny	Bacillus siamensis sp. nov., isolated from salted crab (poo-khem) in Thailand.	Sumpavapol P, Tongyonk L, Tanasupawat S, Chokesajjawatee N, Luxananil P, Visessanguan W.	Int J Syst Evol Microbiol	10.1099/ijs.0.018879-0	2010

References

#3083	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7264
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#23299	L. K. NAKAMURA: Taxonomic Relationship of Black-Pigmented Bacillus subtilis Strains and a Proposal for Bacillus atrophaeus sp. nov.. IJSEM 39: 295 - 300 1989 ( DOI 10.1099/00207713-39-3-295 )
#36886	; Curators of the CIP;
#49270	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 28524
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116542	Collection of Institut Pasteur ; Curators of the CIP; CIP 107159
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bacillus atrophaeus (DSM 7264, ATCC 49337, NRRL NRS-213)

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