Nocardia pseudovaccinii AR 368 is an obligate aerobe, mesophilic, Gram-positive prokaryote that was isolated from soil.
Gram-positive rod-shaped obligate aerobe mesophilic genome sequence 16S sequence| @ref 20215 |
|
|
| Domain Bacillati |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Mycobacteriales |
| Family Nocardiaceae |
| Genus Nocardia |
| Species Nocardia pseudovaccinii |
| Full scientific name Nocardia pseudovaccinii Kim et al. 2002 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 10680 | ORGANIC MEDIUM 79 (DSMZ Medium 426) | Medium recipe at MediaDive | Name: ORGANIC MEDIUM 79 (DSMZ Medium 426) Composition: Agar 15.0 g/l Peptone 10.0 g/l Dextrose 10.0 g/l NaCl 6.0 g/l Yeast extract 2.0 g/l Casein peptone 2.0 g/l Distilled water | ||
| 40697 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 122010 | CIP Medium 72 | Medium recipe at CIP |
| 67770 | Observationquinones: MK-8(H4, ω-cycl) |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 18493 | 22599 ChEBI | arabinose | - | ||
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 18493 | 62968 ChEBI | cellulose | - | ||
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | - | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | - | builds acid from | from API 50CH acid |
| 68379 | 17634 ChEBI | D-glucose | - | fermentation | from API Coryne |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68379 | 16899 ChEBI | D-mannitol | - | fermentation | from API Coryne |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 68371 | 16024 ChEBI | D-mannose | - | builds acid from | from API 50CH acid |
| 68379 | 16988 ChEBI | D-ribose | - | fermentation | from API Coryne |
| 68371 | 16988 ChEBI | D-ribose | - | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68379 | 65327 ChEBI | D-xylose | - | fermentation | from API Coryne |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 68379 | 4853 ChEBI | esculin | + | hydrolysis | from API Coryne |
| 122010 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68371 | 4853 ChEBI | esculin | - | builds acid from | from API 50CH acid |
| 18493 | 28757 ChEBI | fructose | - | ||
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68379 | 5291 ChEBI | gelatin | - | hydrolysis | from API Coryne |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 18493 | 17234 ChEBI | glucose | + | ||
| 68371 | 17754 ChEBI | glycerol | - | builds acid from | from API 50CH acid |
| 68379 | 28087 ChEBI | glycogen | - | fermentation | from API Coryne |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 122010 | 606565 ChEBI | hippurate | + | hydrolysis | |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68379 | 17716 ChEBI | lactose | - | fermentation | from API Coryne |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68379 | 17306 ChEBI | maltose | - | fermentation | from API Coryne |
| 68371 | 17306 ChEBI | maltose | - | builds acid from | from API 50CH acid |
| 18493 | 29864 ChEBI | mannitol | - | ||
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 18493 | 17268 ChEBI | myo-inositol | + | ||
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | - | builds acid from | from API 50CH acid |
| 68379 | 17632 ChEBI | nitrate | - | reduction | from API Coryne |
| 122010 | 17632 ChEBI | nitrate | + | reduction | |
| 122010 | 17632 ChEBI | nitrate | - | respiration | |
| 122010 | 16301 ChEBI | nitrite | - | reduction | |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid | |
| 18493 | 16634 ChEBI | raffinose | - | ||
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 18493 | 26546 ChEBI | rhamnose | - | ||
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 18493 | 17992 ChEBI | sucrose | - | ||
| 68379 | 17992 ChEBI | sucrose | + | fermentation | from API Coryne |
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 68371 | 27082 ChEBI | trehalose | - | builds acid from | from API 50CH acid |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68379 | 16199 ChEBI | urea | + | hydrolysis | from API Coryne |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| 18493 | 18222 ChEBI | xylose | - |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 122010 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 122010 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68379 | alkaline phosphatase | + | 3.1.3.1 | from API Coryne |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68379 | alpha-glucosidase | + | 3.2.1.20 | from API Coryne |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 122010 | amylase | - | ||
| 122010 | beta-galactosidase | + | 3.2.1.23 | |
| 68379 | beta-galactosidase | + | 3.2.1.23 | from API Coryne |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68379 | beta-glucosidase | + | 3.2.1.21 | from API Coryne |
| 68379 | beta-glucuronidase | - | 3.2.1.31 | from API Coryne |
| 122010 | caseinase | - | 3.4.21.50 | |
| 122010 | catalase | + | 1.11.1.6 | |
| 122010 | DNase | - | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 122010 | gamma-glutamyltransferase | + | 2.3.2.2 | |
| 122010 | gelatinase | - | ||
| 68379 | gelatinase | - | from API Coryne | |
| 122010 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 122010 | lipase | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 122010 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API Coryne |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 122010 | ornithine decarboxylase | - | 4.1.1.17 | |
| 122010 | oxidase | - | ||
| 122010 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 68379 | pyrazinamidase | - | 3.5.1.B15 | from API Coryne |
| 68379 | pyrrolidonyl arylamidase | + | 3.4.19.3 | from API Coryne |
| 122010 | tryptophan deaminase | - | ||
| 122010 | tween esterase | - | ||
| 122010 | urease | + | 3.5.1.5 | |
| 68379 | urease | + | 3.5.1.5 | from API Coryne |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 122010 | not determinedn.d. | - | - | - | - | - | - | - | - | - | - | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - |
Global distribution of 16S sequence KF410369 (>99% sequence identity) for Nocardia pseudovaccinii from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | |
|---|---|---|---|---|---|---|---|
| 67770 | ASM161322v1 assembly for Nocardia pseudovaccinii NBRC 100343 | contig | 1210093 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Nocardia pseudovaccinii strain DSM 43406 16S ribosomal RNA gene, partial sequence | AY756559 | 606 | 189540 | ||
| 20218 | Nocardia pseudovaccinii 16S ribosomal RNA gene, partial sequence | GQ376189 | 1439 | 189540 | ||
| 20218 | Nocardia pseudovaccinii strain DSM 43406 16S ribosomal RNA gene, partial sequence | KF410369 | 1355 | 189540 | ||
| 10680 | Nocardia pseudovaccinii strain DSM 43406 16S ribosomal RNA gene, complete sequence | AF430046 | 1492 | 189540 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 67770 | 65.7 | genome sequence analysis |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | yes | 81.20 | no |
| 125439 | motility | BacteriaNetⓘ | no | 93.20 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 98.50 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 98.90 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 91.35 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 95.56 | yes |
| 125438 | spore-forming | spore-formingⓘ | yes | 65.79 | no |
| 125438 | aerobic | aerobicⓘ | yes | 86.82 | no |
| 125438 | thermophilic | thermophileⓘ | no | 96.40 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 89.00 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Pathogenicity | Identification of a novel drug-resistant community-acquired Nocardia spp. in a patient with bronchiectasis. | Li Z, Li Y, Li S, Li Z, Mai Y, Cheng J, Su D, Zhan Y, Zhong N, Ye F | Emerg Microbes Infect | 10.1080/22221751.2022.2069514 | 2022 | |
| Phylogeny | Nocardia pseudovaccinii sp. nov. | Kim KK, Roth A, Andrees S, Lee ST, Kroppenstedt RM | Int J Syst Evol Microbiol | 10.1099/00207713-52-5-1825 | 2002 |
| #10680 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43406 |
| #18493 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #40697 | ; Curators of the CIP; |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68371 | Automatically annotated from API 50CH acid . |
| #68379 | Automatically annotated from API Coryne . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #122010 | Collection of Institut Pasteur ; Curators of the CIP; CIP 107747 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
You found an error in BacDive? Please tell us about it!
Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.
Successfully sent
If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive10763.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data