[Ref.: #11507] |
Sample type/isolated from |
sputum |
[Ref.: #11507] |
Geographic location (country and/or sea, region) |
Berlin |
[Ref.: #11507] |
Country |
Germany |
[Ref.: #11507] |
Country ISO 3 Code |
DEU |
[Ref.: #11507] |
Continent |
Europe |
|
[Ref.: #57068] |
Sample type/isolated from |
Human sputum,chronic lung disease |
[Ref.: #57068] |
Geographic location (country and/or sea, region) |
Berlin |
[Ref.: #57068] |
Country |
Germany |
[Ref.: #57068] |
Country ISO 3 Code |
DEU |
[Ref.: #57068] |
Continent |
Europe |
|
[Ref.: #67770] |
Sample type/isolated from |
Sputa of a patient with chronic lung disease |
|
[Ref.: #121636] |
Sample type/isolated from |
Human, Sputum |
* marker position based on {}
|
|
Isolation sources categories |
#Host Body Product |
#Fluids |
#Sputum |
|
|
-
Information on genomic background e.g. entries in nucleic sequence databass Sequence information
|
16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
|
|
Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #20218] |
Nocardia paucivorans 16S ribosomal RNA gene, complete sequence |
AF179865 |
1459 |
|
114259 tax ID |
* |
[Ref.: #20218] |
Nocardia paucivorans clone A4 16S ribosomal RNA gene, partial sequence |
AY262324 |
502 |
|
114259 tax ID |
* |
[Ref.: #20218] |
Nocardia paucivorans strain ATCC BAA-278 16S ribosomal RNA gene, partial sequence |
DQ659913 |
1393 |
|
114259 tax ID |
* |
[Ref.: #20218] |
Nocardia paucivorans strain ATCC BAA-278 16S ribosomal RNA gene, partial sequence |
FJ172128 |
608 |
|
114259 tax ID |
* |
[Ref.: #20218] |
Nocardia paucivorans strain ATCC BAA-278 16S ribosomal RNA gene, partial sequence |
GQ376188 |
1443 |
|
114259 tax ID |
* |
[Ref.: #20218] |
Nocardia paucivorans strain ATCC BAA-278 clone 1 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
GU236432 |
646 |
|
114259 tax ID |
* |
[Ref.: #20218] |
Nocardia paucivorans strain ATCC BAA-278 clone 2 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
GU236433 |
646 |
|
114259 tax ID |
* |
[Ref.: #20218] |
Nocardia paucivorans strain ATCC BAA-278 clone 3 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
GU236434 |
646 |
|
114259 tax ID |
* |
[Ref.: #20218] |
Nocardia paucivorans strain ATCC BAA-278 clone 4 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
GU236435 |
646 |
|
114259 tax ID |
* |
[Ref.: #20218] |
Nocardia paucivorans strain ATCC BAA-278 clone 5 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
GU236436 |
646 |
|
114259 tax ID |
* |
[Ref.: #20218] |
Nocardia paucivorans strain DSM 44386 16S ribosomal RNA gene, complete sequence |
AF430041 |
1494 |
|
114259 tax ID |
* |
[Ref.: #20218] |
Nocardia paucivorans strain DSM 44386 16S ribosomal RNA gene, partial sequence |
AY756557 |
606 |
|
114259 tax ID |
* |
[Ref.: #20218] |
Nocardia paucivorans strain DSM 44386 16S ribosomal RNA gene, partial sequence |
JN041587 |
464 |
|
114259 tax ID |
* |
|
|
Genome sequence information: |
|
|
Sequence accession description |
Seq. accession number |
Assembly level |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #67770] |
Nocardia paucivorans NBRC 100373 |
GCA_000308675 |
contig |
|
1206734 tax ID |
[Ref.: #66792] |
Nocardia paucivorans NBRC 100373 |
1206734.4 |
wgs |
|
1206734 tax ID |
* |
[Ref.: #66792] |
Nocardia paucivorans NBRC 100373 |
2551306169 |
draft |
|
1206734 tax ID |
* |
|
[Ref.: #67770] |
GC-content |
65.9 mol% |
high performance liquid chromatography (HPLC) |
[Ref.: #67770] |
GC-content |
66.6 mol% |
genome sequence analysis |
|
-
Availability in culture collections External links
[Ref.: #11507] |
Culture collection no. |
DSM 44386, ATCC BAA-278, JCM 10919, NBRC 100373, CCUG 46117, IMMIB D-1632, CGMCC 4.1722, CIP 106798, IFM 10001 |
[Ref.: #79996] |
SI-ID 50604
|
* |
|
Literature: |
|
Topic |
Title |
Authors |
Journal |
DOI |
Year |
|
Phylogeny |
Nocardia abscessus sp. nov. |
Yassin AF, Rainey FA, Mendrock U, Brzezinka H, Schaal KP |
Int J Syst Evol Microbiol |
10.1099/00207713-50-4-1487 |
2000 |
* |
Phylogeny |
Nocardia paucivorans sp. nov. |
Yassin AF, Rainey FA, Burghardt J, Brzezinka H, Mauch M, Schaal KP |
Int J Syst Evol Microbiol |
10.1099/00207713-50-2-803 |
2000 |
* |
|
- References
-
#11507 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 44386
|
-
-
-
-
#39584 |
; Curators of the CIP;
|
-
#57068 |
Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG;
CCUG 46117
|
-
-
#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
|
-
#68379 |
Automatically annotated from API Coryne .
|
-
#68382 |
Automatically annotated from API zym .
|
-
#69479 |
João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.:
MicrobeAtlas 1.0 beta
.
|
-
-
-
#79996 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID50604.1 )
|
-
#121636 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 106798
|
- * These data were automatically processed and therefore are not curated
Change proposal
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