Name: Nocardia vaccinii BG 19
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 10721

Type strain:

Species: Nocardia vaccinii

Strain Designation: BG 19, Schering 245, BG19, 245

Culture col. no.: DSM 43285, ATCC 11092, CBS 247.55, CCM 2757, IFO 15922, IMET 7503, IMRU 3500, JCM 3395, NBRC 15922, CCUG 46116, BCRC 13695, CIP 104899, ICMP 15782, ICMP 5814, IMSNU 21184, NCPPB 954, NRRL WC-3500, VKM Ac-1336, VKM Ac-856, CCRC 13695

Strain history: CIP <- 1996, JCM <- DSM <- K. Kieslich Schering: strain 245 <- ATCC <- N.R. Smith: strain BG19

NCBI tax ID(s): 1210098 (strain), 1822 (species)

SI-ID 6297

ATCC 11092, CIP 104899, CCM 2757, CCRC 13695, DSM 43285, IMET 7503, JCM 3395, IFO 15922, VKM Ac-856, ICMP 5814, NCPPB 954, VKM Ac-1336, CBS 247.55, CCUG 46116, NRRL WC-3500, NBRC 15922, BCRC 13695, ICMP 15782

Other strains from Nocardia vaccinii

N. vaccinii w2100, DSM 43407, IMRU 1591

Section

Nocardia vaccinii BG 19 is an aerobe, spore-forming, mesophilic plant pathogen that was isolated from stem galls on blueberry.

spore-forming
aerobe
mesophilic
plant pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Nocardiaceae*
	Genus	*Nocardia*
	Species	**Nocardia vaccinii**
	Full Scientific Name (LPSN)	Nocardia vaccinii Demaree and Smith 1952 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #123769]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #123769]	Cell shape	rod-shaped

[Ref.: #123769]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.342

[Ref.: #57067]

Incubation period

5-7 days

Multimedia content

[Ref.: #10927]

Caption:

Medium 65 28°C

[Ref.: #10927]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10927]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #10927]

Culture medium growth

[Ref.: #10927]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10927]

Culture medium composition

expand / minimize

[Ref.: #10927]

Culture medium

PEPTONE MEAT EXTRACT GLYCEROL AGAR (DSMZ Medium 250)

[Ref.: #10927]

Culture medium growth

[Ref.: #10927]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10927]

Culture medium composition

expand / minimize

[Ref.: #39135]

Culture medium

MEDIUM 116 - for Streptomyces, Nocardia, Streptosporangium and Mycobacterium chlorophenolicum

[Ref.: #39135]

Culture medium growth

[Ref.: #39135]

Culture medium composition

expand / minimize

[Ref.: #123769]

Culture medium

CIP Medium 116

[Ref.: #123769]

Culture medium growth

[Ref.: #123769]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #123769]

Culture medium

CIP Medium 194

[Ref.: #123769]

Culture medium growth

[Ref.: #123769]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #10927]		growth	28 °C
[Ref.: #18485]		optimum	30 °C
[Ref.: #39135]		growth	30 °C
[Ref.: #57067]		growth	30 °C
[Ref.: #67770]		growth	28 °C
[Ref.: #123769]		growth	25-41 °C
[Ref.: #123769]	no	growth	10 °C
[Ref.: #123769]	no	growth	45 °C

[Ref.: #10927]	Temperature range	mesophilic
[Ref.: #18485]	Temperature range	mesophilic
[Ref.: #39135]	Temperature range	mesophilic
[Ref.: #57067]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #123769]	Temperature range	psychrophilic
[Ref.: #123769]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #57067]	Oxygen tolerance	aerobe
[Ref.: #123769]	Oxygen tolerance	obligate aerobe

[Ref.: #69481]

Ability of spore formation

yes Confidence in %99

	Salt	Tested relation		Salt conc.
[Ref.: #18485]	NaCl		maximum	2.5	%
[Ref.: #123769]	NaCl		growth	0-2	%
[Ref.: #123769]	NaCl	no	growth	4	%
[Ref.: #123769]	NaCl	no	growth	6	%
[Ref.: #123769]	NaCl	no	growth	8	%
[Ref.: #123769]	NaCl	no	growth	10	%

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #18485]	arabinose ChEBI	+
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #18485]	cellulose ChEBI	-
[Ref.: #123769]	citrate ChEBI	-	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123769]	esculin ChEBI	-	hydrolysis
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #18485]	fructose ChEBI	+
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #18485]	glucose ChEBI	+
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123769]	hippurate ChEBI	-	hydrolysis
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #18485]	mannitol ChEBI	+
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #18485]	myo-inositol ChEBI	+
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123769]	nitrate ChEBI	+	reduction
[Ref.: #123769]	nitrate ChEBI	-	respiration
[Ref.: #123769]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #18485]	raffinose ChEBI	-
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #18485]	rhamnose ChEBI	+
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #18485]	sucrose ChEBI	-
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #18485]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #123769]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #123769]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #123769]		acetoin ChEBI	-
[Ref.: #123769]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #123769]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123769]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123769]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #123769]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #123769]	gelatinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123769]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #123769]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123769]	oxidase	-
[Ref.: #123769]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #123769]	tryptophan deaminase	-
[Ref.: #123769]	tween esterase	-
[Ref.: #123769]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #123769]	9810	not determinedn.d.	-	-	-	-	-	-	-	-	-	+/-	+/-	-	-	-	+/-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #123769]	889	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	+	+	-	-	+	+	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	+	-	-	-	-	-	-	-	+	-	+	-	-	-	+	-	+	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123769]	8285	-	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10927]	Sample type/isolated from	stem galls on blueberry

[Ref.: #67770]	Sample type/isolated from	Galls on blueberry plants

[Ref.: #123769]	Sample type/isolated from	Plant, Galls on blueberry plants
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Shrub (Scrub)
#Infection	#Plant infections	#Gall
#Host Body-Site	#Plant	#Stem (Branch)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X80597 (>99% sequence identity) for Nocardia from Microbeatlas

Aquatic Samples
Soil Samples	89
Animal Samples	26
Plant Samples	8
Total Samples	123

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10927]	Pathogenicity (plant)	yes
[Ref.: #10927]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #18485]	Biosafety level	1	German classification
[Ref.: #123769]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Nocardia vaccinii strain ATCC 11092T 16S ribosomal RNA gene, partial sequence	AY191252	1418	ENA	1822 tax ID	*
[Ref.: #20218]	Nocardia vaccinii strain ATCC 11092 16S ribosomal RNA gene, partial sequence	DQ659917	1428	ENA	1822 tax ID	*
[Ref.: #20218]	Nocardia vaccinii strain W7669 16S ribosomal RNA gene, partial sequence	GQ853071	1439	ENA	1822 tax ID	*
[Ref.: #20218]	Nocardia vaccinii 16S rRNA gene, strain ATCC 11092T	X80597	1395	ENA	1822 tax ID	*
[Ref.: #20218]	Nocardia vaccinii strain DSM 43285 16S ribosomal RNA gene, complete sequence	AF430045	1492	ENA	1822 tax ID	*
[Ref.: #20218]	Nocardia vaccinii strain DSM 43285 16S-23S ribosomal RNA intergenic spacer, complete sequence	AF536489	319	ENA	1822 tax ID	*
[Ref.: #20218]	N.vaccinii gene for 16S ribosomal RNA	Z36927	1472	ENA	1822 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Nocardia vaccinii NBRC 15922 NBRC 15922	GCA_001613305	contig	GenBank	1210098 tax ID
[Ref.: #66792]	Nocardia vaccinii NBRC 15922	1210098.4	wgs	PATRIC	1210098 tax ID	*
[Ref.: #66792]	Nocardia vaccinii NBRC 15922	2681812982	draft	JGI IMG/M	1210098 tax ID	*

[Ref.: #67770]

GC-content

66.7 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Nocardia vaccinii NBRC 15922 PATRIC: 1210098.4
[Ref.: #69481]	spore-forming	yes	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nocardia vaccinii NBRC 15922 PATRIC: 1210098.4
[Ref.: #69480]	motile	no	94.787	no
[Ref.: #69480]	gram-positive	yes	85.079	no
[Ref.: #69480]	anaerobic	no	97.964	yes
[Ref.: #69480]	aerobic	yes	81.181	no
[Ref.: #69480]	halophile	no	94.136	no
[Ref.: #69480]	spore-forming	yes	80.592	no
[Ref.: #69480]	thermophile	no	98.71	yes
[Ref.: #69480]	glucose-util	yes	88.583	no
[Ref.: #69480]	flagellated	no	98.712	no
[Ref.: #69480]	glucose-ferment	no	90.29	no

Availability in culture collections External links

[Ref.: #10927]

Culture collection no.

DSM 43285, ATCC 11092, CBS 247.55, CCM 2757, IFO 15922, IMET 7503, IMRU 3500, JCM 3395, NBRC 15922, CCUG 46116, BCRC 13695, CIP 104899, ICMP 15782, ICMP 5814, IMSNU 21184, NCPPB 954, NRRL WC-3500, VKM Ac-1336, VKM Ac-856, CCRC 13695

[Ref.: #79990]

SI-ID 6297

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Genome insights into the pharmaceutical and plant growth promoting features of the novel species Nocardia alni sp. nov.	Nouioui I, Ha SM, Baek I, Chun J, Goodfellow M	BMC Genomics	10.1186/s12864-021-08257-y	2022	*

References

#10927

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43285

#18485

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39135 ; Curators of the CIP;
#57067 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 46116

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#79990

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID6297.1 )

#123769 Collection of Institut Pasteur ; Curators of the CIP; CIP 104899
* These data were automatically processed and therefore are not curated

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Nocardia vaccinii NBRC 15922

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