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Information on genomic background e.g. entries in nucleic sequence databass Sequence information
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16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
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Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
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[Ref.: #20218] |
N.otitidis-caviarum gene for 16S ribosomal RNA (partial) |
Z46885 |
373 |
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1823 tax ID |
* |
[Ref.: #20218] |
Nocardia otitidiscaviarum clone A13 16S ribosomal RNA gene, partial sequence |
AY262316 |
500 |
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1823 tax ID |
* |
[Ref.: #20218] |
Nocardia otitidiscaviarum strain ATCC 14629 16S ribosomal RNA gene, partial sequence |
AY756556 |
606 |
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1823 tax ID |
* |
[Ref.: #20218] |
Nocardia otitidiscaviarum strain ATCC 14629 16S ribosomal RNA gene, partial sequence |
DQ659912 |
1434 |
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1823 tax ID |
* |
[Ref.: #20218] |
Nocardia otitidiscaviarum strain ATCC 14629 16S ribosomal RNA gene, partial sequence |
GQ376191 |
1439 |
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1823 tax ID |
* |
[Ref.: #20218] |
Nocardia otitidiscaviarum strain ATCC 14629 clone 1 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
GU236422 |
602 |
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1823 tax ID |
* |
[Ref.: #20218] |
Nocardia otitidiscaviarum strain ATCC 14629 clone 2 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
GU236423 |
622 |
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1823 tax ID |
* |
[Ref.: #20218] |
Nocardia otitidiscaviarum strain ATCC 14629 clone 3 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
GU236424 |
622 |
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1823 tax ID |
* |
[Ref.: #20218] |
Nocardia otitidiscaviarum strain ATCC 14629 clone 4 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
GU236425 |
623 |
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1823 tax ID |
* |
[Ref.: #20218] |
Nocardia otitidiscaviarum strain ATCC 14629 clone 5 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
GU236426 |
623 |
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1823 tax ID |
* |
[Ref.: #20218] |
Nocardia otitidiscaviarum strain ATCC 14629 clone 6 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
GU236427 |
602 |
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1823 tax ID |
* |
[Ref.: #20218] |
Nocardia otitidis-caviarum small subunit ribosomal RNA sequence |
M59056 |
1460 |
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1823 tax ID |
* |
[Ref.: #20218] |
Nocardia otitidiscaviarum 16S rRNA gene, strain ATCC 14629T |
X80599 |
1394 |
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1823 tax ID |
* |
[Ref.: #20218] |
Nocardia otitidiscaviarum strain CGMCC 4.1168 16S-23S ribosomal RNA intergenic spacer, complete sequence |
DQ518345 |
318 |
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1823 tax ID |
* |
[Ref.: #20218] |
Nocardia otitidiscaviarum strain DSM 43242 16S ribosomal RNA gene, complete sequence |
AF430067 |
1492 |
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1823 tax ID |
* |
[Ref.: #20218] |
Nocardia otitidiscaviarum strain DSM 43242 note copy 1 16S-23S ribosomal RNA intergenic spacer, complete sequence |
AF536465 |
318 |
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1823 tax ID |
* |
[Ref.: #20218] |
Nocardia otitidiscaviarum strain DSM 43242 note copy 2 16S-23S ribosomal RNA intergenic spacer, complete sequence |
AF536466 |
298 |
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1823 tax ID |
* |
[Ref.: #20218] |
Nocardia otitidiscaviarum strain DSM 43242 16S ribosomal RNA gene, partial sequence |
JN041512 |
462 |
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1823 tax ID |
* |
[Ref.: #20218] |
Nocardia otitidiscaviarum 16S rRNA gene, strain DSM43242T |
X80611 |
1477 |
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1823 tax ID |
* |
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Availability in culture collections External links
[Ref.: #10898] |
Culture collection no. |
DSM 43242, ATCC 14629, NCTC 1934, CCUG 10075, JCM 3377, CBS 262.39, CCM 2779, CGMCC 4.1168, CIP 104514, IFM 0239, IFO 14405, IID 5214, IMSNU 21221, JCM 3393, KCTC 9960, NBRC 14405, NCIMB 12084, VKM Ac-869 |
[Ref.: #79949] |
SI-ID 36128
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* |
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Literature: |
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Topic |
Title |
Authors |
Journal |
DOI |
Year |
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Phylogeny |
Nocardia acididurans sp. nov., an acid-tolerant actinobacterium isolated from bio-fertilizer of Musa species. |
Sirireung N, Duangupama T, Suriyachadkun C, Thawai C |
Int J Syst Evol Microbiol |
10.1099/ijsem.0.005170 |
2021 |
* |
Phylogeny |
Nocardia yunnanensis sp. nov., an actinomycete isolated from a soil sample. |
Zhang JX, Ming H, Zhao ZL, Ji WL, Chang XL, Zhang LY, Cheng LJ, Meng XL, Li WJ, Nie GX |
Int J Syst Evol Microbiol |
10.1099/ijsem.0.003600 |
2019 |
* |
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Lymphocutaneous nocardiosis caused by Nocardia otitidiscaviarum: A case report and review of literature. |
Shahapur PR, Peerapur BV, Shahapur RP, Honnutagi RM, Biradar MS |
J Nat Sci Biol Med |
10.4103/0976-9668.127328 |
2014 |
* |
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- References
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#10898 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 43242
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#39023 |
; Curators of the CIP;
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#45263 |
Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG;
CCUG 10075
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#66794 |
Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg:
BRENDA, the ELIXIR core data resource in 2021: new developments and updates.
Nucleic Acids Res. 49:
D498 - D508
2020 (
DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
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#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
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#68368 |
Automatically annotated from API 20E .
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#68371 |
Automatically annotated from API 50CH acid .
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#68379 |
Automatically annotated from API Coryne .
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#68382 |
Automatically annotated from API zym .
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#79949 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID36128.1 )
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#121470 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 104514
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- * These data were automatically processed and therefore are not curated
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