[Ref.: #10695] |
Sample type/isolated from |
sputum of patient with tuberculosis |
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[Ref.: #67770] |
Sample type/isolated from |
Sputum |
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[Ref.: #117004] |
Sample type/isolated from |
Human, Sputum |
* marker position based on {}
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Isolation sources categories |
#Infection |
#Disease |
#Tuberculosis |
#Infection |
#Patient |
- |
#Host Body-Site |
#Oral cavity and airways |
#Lung |
#Host Body Product |
#Fluids |
#Sputum |
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Information on genomic background e.g. entries in nucleic sequence databass Sequence information
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16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
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Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #20218] |
Nocardia brevicatena strain DSM 43024 16S ribosomal RNA gene, partial sequence |
AY756545 |
606 |
|
1206725 tax ID |
* |
[Ref.: #20218] |
Nocardia brevicatena strain ATCC 15333 16S ribosomal RNA gene, partial sequence |
DQ659903 |
1436 |
|
1206725 tax ID |
* |
[Ref.: #20218] |
Nocardia brevicatena strain W9965 16S ribosomal RNA gene, partial sequence |
GQ853081 |
1441 |
|
37327 tax ID |
* |
[Ref.: #20218] |
Nocardia brevicatena strain ATCC 15333 clone 1 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
GU236345 |
635 |
|
1206725 tax ID |
* |
[Ref.: #20218] |
Nocardia brevicatena strain ATCC 15333 clone 2 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
GU236346 |
635 |
|
1206725 tax ID |
* |
[Ref.: #20218] |
Nocardia brevicatena strain ATCC 15333 clone 3 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
GU236347 |
635 |
|
1206725 tax ID |
* |
[Ref.: #20218] |
Nocardia brevicatena NBRC 12119 strain ATCC 15333 16S ribosomal RNA gene, partial sequence |
JN041588 |
462 |
|
1206725 tax ID |
* |
[Ref.: #20218] |
Nocardia brevicatena 16S rRNA gene, strain ATCC 15333T |
X80600 |
1395 |
|
1206725 tax ID |
* |
[Ref.: #20218] |
Nocardia brevicatena NBRC 12119 strain DSM 43024 16S ribosomal RNA gene, complete sequence |
AF430040 |
1494 |
|
1206725 tax ID |
* |
[Ref.: #20218] |
Nocardia brevicatena strain DSM 43024 16S-23S ribosomal RNA intergenic spacer, complete sequence |
AF536407 |
329 |
|
1206725 tax ID |
* |
[Ref.: #20218] |
N.brevicatena gene for 16S ribosomal RNA |
Z36928 |
1474 |
|
1206725 tax ID |
* |
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Genome sequence information: |
|
|
Sequence accession description |
Seq. accession number |
Assembly level |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #67770] |
Nocardia brevicatena NBRC 12119 |
GCA_000308495 |
contig |
|
1206725 tax ID |
[Ref.: #66792] |
Nocardia brevicatena NBRC 12119 |
1206725.5 |
wgs |
|
1206725 tax ID |
* |
[Ref.: #66792] |
Nocardia brevicatena NBRC 12119 |
2551306159 |
draft |
|
1206725 tax ID |
* |
|
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Availability in culture collections External links
[Ref.: #10695] |
Culture collection no. |
DSM 43024, ATCC 15333, IFO 12119, IMRU 1086, KCC A-0029, NBRC 12119, RIA 709, CCUG 46115, JCM 3029, BCRC 13389, CGMCC 4.1163, CIP 104508, IFM 0283, IMET 9542, IMSNU 20103, IMSNU 21207, KCCM 12521, KCTC 9370, NRRL B-2896, VKM Ac-936, IMRU 1086W |
[Ref.: #79924] |
SI-ID 36338
|
* |
|
Literature: |
|
Topic |
Title |
Authors |
Journal |
DOI |
Year |
|
Phylogeny |
Nocardia donostiensis sp. nov., isolated from human respiratory specimens. |
Ercibengoa M, Bell M, Marimon JM, Humrighouse B, Klenk HP, Potter G, Perez-Trallero E |
Antonie Van Leeuwenhoek |
10.1007/s10482-016-0667-8 |
2016 |
* |
|
- References
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#10695 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 43024
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-
-
-
-
#37964 |
; Curators of the CIP;
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-
-
#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
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-
#68368 |
Automatically annotated from API 20E .
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-
#68369 |
Automatically annotated from API 20NE .
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-
#68382 |
Automatically annotated from API zym .
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-
#69479 |
João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.:
MicrobeAtlas 1.0 beta
.
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-
-
-
#79924 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID36338.1 )
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-
#117004 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 104508
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- * These data were automatically processed and therefore are not curated
Change proposal
Successfully sent
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