Gordonia phosphorivorans (DSM 45630, CCM 7957, CCUG 61533)

Name: Gordonia phosphorivorans (DSM 45630, CCM 7957, CCUG 61533)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 10624

Type strain

Strain Designation Ca8

Culture col. no. DSM 45630 CCM 7957 CCUG 61533 LMG 26648 Ca8 2 more

NCBI tax ID(s) 1056982

Special Collections DSMZ CCUG JCM Literature strains CIP

History CIP <- 2011, P. Kämpfer, Inst. Angewandte Mikrobiol., Giessen, Germany: strain Ca8 DSMZ <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; Ca8 <- J. Zimmermann, RWTH Aachen, Germany JCM <-- CCM 7957 <-- P. Kämpfer; Justus-Liebig-Univ. Giessen, Germany; Ca8. CIP <- 2011, P. Kämpfer, Giessen Univ., Giessen, Germany: strain Ca8

Links

Gordonia phosphorivorans Ca8 is an aerobe, Gram-positive, coccus-shaped bacterium that was isolated from wastewater treatment bioreactor.

Gram-positive coccus-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 378857

JCM 30490,LMG 26648,CCM 7957,CCUG 61533,DSM 45630,CIP 110338

@ref 20215

Last LPSN update 2026-05-29 08:27:22

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Gordoniaceae

Genus Gordonia

Species Gordonia phosphorivorans

Full scientific name Gordonia phosphorivorans Kämpfer et al. 2013

BacDive ID	Other strains from **Gordonia phosphorivorans** (2)	Type strain
131257	G. phosphorivorans Ca14, DSM 45631, CCM 7956, LMG 26649
139558	G. phosphorivorans Ca 14, CIP 110337

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
30482	positive	1.25 µm	1.25 µm	coccus-shaped
121809	positive			rod-shaped

Colony morphology

62648

Incubation period2 days

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
37934	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
17921	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
121809	CIP Medium 328	Medium recipe at CIP
121809	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
17921	positive	growth	28
30482	positive	growth	25-30
30482	positive	optimum	27.5
37934	positive	growth	30
62648	positive	growth	37
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30482	aerobe
62648	microaerophile
121809	obligate aerobe
125439	facultative anaerobe	95.13

Spore formation

30482

Spore formationno

Observation

67770

Observationquinones: MK-9(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30482	37054 ChEBI	3-hydroxybutyrate	+	carbon source
30482	30089 ChEBI	acetate	+	carbon source
30482	22599 ChEBI	arabinose	+	carbon source
30482	28757 ChEBI	fructose	+	carbon source
30482	28260 ChEBI	galactose	+	carbon source
30482	17234 ChEBI	glucose	+	carbon source
121809	17632 ChEBI	nitrate	+	reduction
121809	16301 ChEBI	nitrite	-	reduction
30482	15361 ChEBI	pyruvate	+	carbon source
30482	33942 ChEBI	ribose	+	carbon source
30482	17992 ChEBI	sucrose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
121809	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
30482	catalase	+	1.11.1.6
121809	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
30482	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121809	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
121809	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121809	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	+	+	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Bioreactor	-
#Engineered	#Waste	#Wastewater

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
17921	wastewater treatment bioreactor	Aachen	Germany	DEU	Europe
62648	Waste water,bioreactor
67770	Wastewater treatment bioreactor	Aechen	Germany	DEU	Europe
121809	Environment, Wastewater bioreactor		Germany	DEU	Europe	2009

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17921	1	Risk group (German classification) According to TRBA 466
121809	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4243262v1 assembly for Gordonia phosphorivorans CCM 7957	contig	GCA_042432625	1056982	65.75
124043	ASM4266504v1 assembly for Gordonia phosphorivorans CCUG 61533	contig	GCA_042665045	1056982	64.55

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
17921	Gordonia phosphorivorans partial 16S rRNA gene, type strain Ca8T	HE574551	1372	1056982
124043	Gordonia phosphorivorans strain CCM 7957 16S ribosomal RNA gene, partial sequence.	MT760058	1339	1056982
124043	Gordonia phosphorivorans strain CCM 7957 16S ribosomal RNA gene, partial sequence.	MT758015	1339	1056982

GC content

17921

GC-content (mol%)67

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4243262v1 assembly for Gordonia phosphorivorans CCM 7957
NCBI: GCA_042432625

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	95.13	no
125439	gram_stain	BacteriaNetⓘ	positive	89.14	no
125439	motility	BacteriaNetⓘ	no	79.99	no
125439	spore_formation	BacteriaNetⓘ	no	86.76	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gordonia phosphorivorans sp. nov., isolated from a wastewater bioreactor with phosphorus removal.	Kampfer P, Martin K, Dott W	Int J Syst Evol Microbiol	10.1099/ijs.0.037093-0	2012

References

#17921	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45630
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26816	IJSEM 230 2013 ( DOI 10.1099/ijs.0.037093-0 , PubMed 22389287 )
#30482	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26816
#37934	; Curators of the CIP;
#62648	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 61533
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#121809	Collection of Institut Pasteur ; Curators of the CIP; CIP 110338
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Gordonia phosphorivorans (DSM 45630, CCM 7957, CCUG 61533)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042432625

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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