Gordonia effusa (CCUG 53882, CIP 109345, DSM 44810)

Name: Gordonia effusa (CCUG 53882, CIP 109345, DSM 44810)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 10611

Type strain

Culture col. no. CCUG 53882 CIP 109345 DSM 44810 IFM 10200 JCM 12130 1 more

NCBI tax ID(s) 1077974 263908

Special Collections DSMZ CCUG JCM CIP Wink compendium Literature strains

History <- Y. Mikami, IFM Y. Mikami IFM 10200. CIP <- 2006, JCM <- 2003, IFM

Links

Gordonia effusa CCUG 53882 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from human sputum.

spore-forming Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 297194

DSM 44810,JCM 12130,NBRC 100432,CIP 109345,CCUG 53882

@ref 20215

Last LPSN update 2026-02-09 11:20:18

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Gordoniaceae

Genus Gordonia

Species Gordonia effusa

Full scientific name Gordonia effusa Kageyama et al. 2006

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31693	positive	0.5-2.1 µm	0.3-0.6 µm	rod-shaped
118998	positive			rod-shaped
125438					92
125438	positive				92.553

Colony morphology

@ref	Colony color	Incubation period	Medium used
20125	Pastel yellow (1034)	10-14 days	ISP 2
20125	Pastel yellow (1034)	10-14 days	ISP 3
20125	Pastel yellow (1034)	10-14 days	ISP 4
20125	Pastel yellow (1034)	10-14 days	ISP 5
20125	Pastel yellow (1034)	10-14 days	ISP 6
20125	Pastel yellow (1034)	10-14 days	ISP 7
60051		2 days

Multicellular morphology

@ref	Forms multicellular complex	Medium name
20125		ISP 2
20125		ISP 3
20125		ISP 4
20125		ISP 5
20125		ISP 6
20125		ISP 7

Pigmentation

31693

Productionyes

Multimedia

@ref:	12095
multimedia content:	DSM_44810.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_44810.jpg
caption:	Medium 535 28 °C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
12095	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
20125	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
20125	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
20125	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
20125	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
20125	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
20125	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
37519	MEDIUM 116 - for Streptomyces, Nocardia, Streptosporangium and Mycobacterium chlorophenolicum		Distilled water make up to (1000.000 ml);Agar (20.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g)
118998	CIP Medium 116	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
12095	positive	growth	28
20125	positive	optimum	28
31693	positive	growth	30
31693	positive	optimum	30
37519	positive	growth	30
60051	positive	growth	37
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH
31693	positive	optimum	7
31693	positive	growth	7

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31693	aerobe
60051	microaerophile
118998	obligate aerobe
125438	aerobe	90.951
125439	obligate aerobe	96

Spore formation

31693

Spore formationyes

Observation

@ref	Observation
31693	aggregates in chains
67770	quinones: MK-9(H₈), MK-9(H₆)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31693	16449 ChEBI	alanine	+	carbon source
31693	35391 ChEBI	aspartate	+	carbon source
31693	16947 ChEBI	citrate	+	carbon source
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	+	hydrolysis	from API Coryne
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
31693	506227 ChEBI	N-acetylglucosamine	+	carbon source
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
118998	17632 ChEBI	nitrate	-	reduction
118998	16301 ChEBI	nitrite	-	reduction
31693	30031 ChEBI	succinate	+	carbon source
31693	17992 ChEBI	sucrose	+	carbon source
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne

Metabolite production

@ref	Chebi-ID	Metabolite	Production
118998	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	+	3.2.1.21	from API zym
68379	beta-glucosidase	+	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
118998	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
31693	cytochrome oxidase	+	1.9.3.1
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	-		from API Coryne
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
118998	oxidase	-
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
118998	urease	+	3.5.1.5
68379	urease	-	3.5.1.5	from API Coryne
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	glycine betaine biosynthesis	100	5 of 5
66794	ethylmalonyl-CoA pathway	100	5 of 5
66794	cyanate degradation	100	3 of 3
66794	vitamin K metabolism	100	5 of 5
66794	enterobactin biosynthesis	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	octane oxidation	100	3 of 3
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	threonine metabolism	100	10 of 10
66794	biotin biosynthesis	100	4 of 4
66794	L-lactaldehyde degradation	100	3 of 3
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	cardiolipin biosynthesis	100	7 of 7
66794	coenzyme A metabolism	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	aerobactin biosynthesis	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	taurine degradation	100	1 of 1
66794	ceramide biosynthesis	100	1 of 1
66794	formaldehyde oxidation	100	3 of 3
66794	butanoate fermentation	100	4 of 4
66794	valine metabolism	100	9 of 9
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	flavin biosynthesis	93.33	14 of 15
66794	propionate fermentation	90	9 of 10
66794	NAD metabolism	88.89	16 of 18
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	propanol degradation	85.71	6 of 7
66794	photosynthesis	85.71	12 of 14
66794	urea cycle	84.62	11 of 13
66794	leucine metabolism	84.62	11 of 13
66794	phenylalanine metabolism	84.62	11 of 13
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	proline metabolism	81.82	9 of 11
66794	pentose phosphate pathway	81.82	9 of 11
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	factor 420 biosynthesis	80	4 of 5
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	heme metabolism	78.57	11 of 14
66794	serine metabolism	77.78	7 of 9
66794	purine metabolism	77.66	73 of 94
66794	lipid metabolism	77.42	24 of 31
66794	vitamin B12 metabolism	76.47	26 of 34
66794	alanine metabolism	75.86	22 of 29
66794	glycogen biosynthesis	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	isoleucine metabolism	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	citric acid cycle	71.43	10 of 14
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	non-pathway related	71.05	27 of 38
66794	glycolysis	70.59	12 of 17
66794	Entner Doudoroff pathway	70	7 of 10
66794	vitamin B1 metabolism	69.23	9 of 13
66794	isoprenoid biosynthesis	69.23	18 of 26
66794	pyrimidine metabolism	68.89	31 of 45
66794	androgen and estrogen metabolism	68.75	11 of 16
66794	IAA biosynthesis	66.67	2 of 3
66794	arginine metabolism	66.67	16 of 24
66794	allantoin degradation	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	molybdenum cofactor biosynthesis	66.67	6 of 9
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	tryptophan metabolism	65.79	25 of 38
66794	oxidative phosphorylation	64.84	59 of 91
66794	metabolism of disaccharids	63.64	7 of 11
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	methionine metabolism	61.54	16 of 26
66794	cysteine metabolism	61.11	11 of 18
66794	arachidonate biosynthesis	60	3 of 5
66794	phenol degradation	60	12 of 20
66794	gallate degradation	60	3 of 5
66794	bile acid biosynthesis, neutral pathway	58.82	10 of 17
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	degradation of sugar alcohols	56.25	9 of 16
66794	d-mannose degradation	55.56	5 of 9
66794	histidine metabolism	55.17	16 of 29
66794	lysine metabolism	54.76	23 of 42
66794	cholesterol biosynthesis	54.55	6 of 11
66794	carotenoid biosynthesis	54.55	12 of 22
66794	sulfate reduction	53.85	7 of 13
66794	3-phenylpropionate degradation	53.33	8 of 15
66794	sphingosine metabolism	50	3 of 6
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	suberin monomers biosynthesis	50	1 of 2
66794	ketogluconate metabolism	50	4 of 8
66794	toluene degradation	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	tyrosine metabolism	50	7 of 14
66794	cyclohexanol degradation	50	2 of 4
66794	arachidonic acid metabolism	50	9 of 18
66794	glutathione metabolism	50	7 of 14
66794	vitamin B6 metabolism	45.45	5 of 11
66794	lipid A biosynthesis	44.44	4 of 9
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	nitrate assimilation	44.44	4 of 9
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	myo-inositol biosynthesis	40	4 of 10
66794	lipoate biosynthesis	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	creatinine degradation	40	2 of 5
66794	starch degradation	40	4 of 10
66794	glycine metabolism	40	4 of 10
66794	cellulose degradation	40	2 of 5
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	polyamine pathway	39.13	9 of 23
66794	degradation of hexoses	38.89	7 of 18
66794	carnitine metabolism	37.5	3 of 8
66794	ascorbate metabolism	36.36	8 of 22
66794	d-xylose degradation	36.36	4 of 11
66794	degradation of pentoses	35.71	10 of 28
66794	methane metabolism	33.33	1 of 3
66794	pantothenate biosynthesis	33.33	2 of 6
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	CMP-KDO biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
20125	-	-	+/-	+	-	-	+	-	+	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
20125	not determinedn.d.	+	+	+	+	+	-	-	-	-	+	+	-	+	-	+	+	-	-	-
118998	-	+	-	+	-	-	-	-	-	-	+	+	-	+	-	+	+	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Fluids	#Sputum

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
12095	human sputum	Japan	JPN	Asia
60051	Human sputum,74-yr-old man,kidney dysfunction	Japan	JPN	Asia
67770	Sputum of a 74-year-old Japanese male patient with kidney dysfunction
118998	Human, Sputum	Japan	JPN	Asia

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
12095	yes, in single cases	1	Risk group (German classification) According to TRBA 466
20125		2
118998		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM24130v2 assembly for Gordonia effusa NBRC 100432	contig	GCA_000241305	1077974.3	2523231038	1077974	51.57

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
12095	Gordonia effusa gene for 16S rRNA, partial sequence, strain: IFM 10200	AB162799	1509		263908

GC content

@ref	GC-content (mol%)	Method
67770	62.5	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Gordonia effusa NBRC 100432
NCBI: GCA_000241305

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	85.90	no
125439	motility	BacteriaNetⓘ	no	64.70	no
125439	gram_stain	BacteriaNetⓘ	positive	83.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Gordonia effusa NBRC 100432
PATRIC: 1077974.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.55	yes
125438	anaerobic	anaerobicⓘ	no	96.97	yes
125438	spore-forming	spore-formingⓘ	no	55.92	yes
125438	aerobic	aerobicⓘ	yes	90.95	no
125438	thermophilic	thermophileⓘ	no	98.00	no
125438	flagellated	motile2+ⓘ	no	92.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	From NTM (Nontuberculous mycobacterium) to Gordonia bronchialis-A Diagnostic Challenge in the COPD Patient.	Franczuk M, Klatt M, Filipczak D, Zabost A, Parniewski P, Kuthan R, Jakubowska L, Augustynowicz-Kopec E.	Diagnostics (Basel)	10.3390/diagnostics12020307	2022
Enzymology	Vanillin production by Corynebacterium glutamicum using heterologous aromatic carboxylic acid reductases.	Matsuzawa M, Ito J, Danjo K, Fukui K.	Biotechnol Biofuels Bioprod	10.1186/s13068-024-02507-3	2024
	Gordonia species as a rare pathogen isolated from milk of dairy cows with mastitis.	Bzdil J, Slosarkova S, Fleischer P, Matiasovic J.	Sci Rep	10.1038/s41598-022-09340-4	2022
	Antimicrobial activity and carbohydrate metabolism in the bacterial metagenome of the soil-living invertebrate Folsomia candida.	Agamennone V, Le NG, van Straalen NM, Brouwer A, Roelofs D.	Sci Rep	10.1038/s41598-019-43828-w	2019
Enzymology	Gordonia bacteremia.	Ramanan P, Deziel PJ, Wengenack NL.	J Clin Microbiol	10.1128/jcm.01449-13	2013
	Identification of genes coding for putative wax ester synthase/diacylglycerol acyltransferase enzymes in terrestrial and marine environments.	Lanfranconi MP, Alvarez AF, Alvarez HM.	AMB Express	10.1186/s13568-015-0128-1	2015
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Genetics	Genomic insights into Gordonia diversity: proposal of three novel species (Gordonia. altitudinis sp. nov., Gordonia. ligustrum sp. nov., and Gordonia. pistacia sp. nov.) with distinct environmental and biomedical traits.	Li CJ, Zhang J, Su J, Yu LY, Chen HH, Zhang YQ.	BMC Microbiol	10.1186/s12866-025-04362-0	2025
Phylogeny	Gordonia asplenii sp. nov., isolated from humic soil on bird's nest fern (Asplenium nidus L.).	Suriyachadkun C, Ngaemthao W, Pujchakarn T, Chunhametha S	Int J Syst Evol Microbiol	10.1099/ijsem.0.004746	2021
Phylogeny	Gordonia araii sp. nov. and Gordonia effusa sp. nov., isolated from patients in Japan.	Kageyama A, Iida S, Yazawa K, Kudo T, Suzuki SI, Koga T, Saito H, Inagawa H, Wada A, Kroppenstedt RM, Mikami Y	Int J Syst Evol Microbiol	10.1099/ijs.0.64067-0	2006

References

#12095	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44810
#20125	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27970	IJSEM 1817 2006 ( DOI 10.1099/ijs.0.64067-0 , PubMed 16902014 )
#31693	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27970
#37519	; Curators of the CIP;
#60051	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53882
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#118998	Collection of Institut Pasteur ; Curators of the CIP; CIP 109345
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Gordonia effusa (CCUG 53882, CIP 109345, DSM 44810)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Metabolite production

Enzymes

Pathway annotation

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000241305

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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