Gordonia polyisoprenivorans (DSM 44266, ID 3865, VH 2)

Name: Gordonia polyisoprenivorans (DSM 44266, ID 3865, VH 2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 10597

Type strain

Strain Designation ID 3865, VH 2

Culture col. no. DSM 44266 ID 3865 VH 2

NCBI tax ID(s) 84595

Special Collections DSMZ

History <- A. Steinbüchel, (Gordonia sp.) Univ. Münster, VH 2

Links

Gordonia polyisoprenivorans ID 3865 is a bacterium that was isolated from earth of rubber tree plantation.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 50543

DSM 44266

@ref 20215

Last LPSN update 2026-02-09 11:20:18

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Gordoniaceae

Genus Gordonia

Species Gordonia polyisoprenivorans

Full scientific name Gordonia polyisoprenivorans Linos et al. 1999

BacDive ID	Other strains from **Gordonia polyisoprenivorans** (2)	Type strain
10598	G. polyisoprenivorans Kd2, DSM 44302, ATCC BAA-14, IFO 16320, JCM ... (type strain)
10599	G. polyisoprenivorans B293, DSM 44439, JCM 14875, IFM 10858

Morphology

Multimedia

@ref:	11638
multimedia content:	DSM_44266.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_44266.jpg
caption:	Medium 215 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
11638	BHI MEDIUM (DSMZ Medium 215)		Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
11638	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
11638	positive	growth	28

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Plantation
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
11638	earth of rubber tree plantation	Buon Ma Thuat	Vietnam	VNM	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11638	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM24771v1 assembly for Gordonia polyisoprenivorans VH2	complete	GCA_000247715	1112204.3	2512564042	1112204	97.36

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	First report of cis-1,4-polyisoprene degradation by Gordonia paraffinivorans.	Braga SP, Dos Santos AP, Paganini T, Barbosa D, Epamino GWC, Morais C, Martins LF, Silva AM, Setubal JC, Vallim MA, Pascon RC.	Braz J Microbiol	10.1007/s42770-019-00143-w	2019
Metabolism	Global Regulator of Rubber Degradation in Gordonia polyisoprenivorans VH2: Identification and Involvement in the Regulation Network.	de Witt J, Oetermann S, Parise M, Parise D, Baumbach J, Steinbuchel A.	Appl Environ Microbiol	10.1128/aem.00774-20	2020
Phylogeny	Comparison of Actinobacteria communities from human-impacted and pristine karst caves.	Buresova-Faitova A, Kopecky J, Sagova-Mareckova M, Alonso L, Vautrin F, Moenne-Loccoz Y, Rodriguez-Nava V.	Microbiologyopen	10.1002/mbo3.1276	2022
Metabolism	Identification of poly(cis-1,4-Isoprene) degradation intermediates during growth of moderately thermophilic actinomycetes on rubber and cloning of a functional lcp homologue from Nocardia farcinica strain E1.	Ibrahim EM, Arenskotter M, Luftmann H, Steinbuchel A.	Appl Environ Microbiol	10.1128/aem.72.5.3375-3382.2006	2006
Metabolism	Identification of Comamonas testosteroni as an androgen degrader in sewage.	Chen YL, Wang CH, Yang FC, Ismail W, Wang PH, Shih CJ, Wu YC, Chiang YR.	Sci Rep	10.1038/srep35386	2016
	Biology of the metabolically diverse genus Gordonia.	Arenskotter M, Broker D, Steinbuchel A.	Appl Environ Microbiol	10.1128/aem.70.6.3195-3204.2004	2004
Metabolism	Biodegradation of cis-1,4-polyisoprene rubbers by distinct actinomycetes: microbial strategies and detailed surface analysis.	Linos A, Berekaa MM, Reichelt R, Keller U, Schmitt J, Flemming HC, Kroppenstedt RM, Steinbuchel A.	Appl Environ Microbiol	10.1128/aem.66.4.1639-1645.2000	2000
Metabolism	Microbial degradation of the multiply branched alkane 2,6,10,15,19, 23-hexamethyltetracosane (Squalane) by Mycobacterium fortuitum and Mycobacterium ratisbonense.	Berekaa MM, Steinbuchel A.	Appl Environ Microbiol	10.1128/aem.66.10.4462-4467.2000	2000
Metabolism	Characterization of the 101-kilobase-pair megaplasmid pKB1, isolated from the rubber-degrading bacterium Gordonia westfalica Kb1.	Broker D, Arenskotter M, Legatzki A, Nies DH, Steinbuchel A.	J Bacteriol	10.1128/jb.186.1.212-225.2004	2004

References

#11638	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44266
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Gordonia polyisoprenivorans (DSM 44266, ID 3865, VH 2)

Name and taxonomic classification

Morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000247715

Genome-based predictions

Literature

Literature

References

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