Gordonia sputi (DSM 43896, ATCC 29627, IMET 7569)

Name: Gordonia sputi (DSM 43896, ATCC 29627, IMET 7569)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 10570

Type strain

Strain Designation 3884

Culture col. no. DSM 43896 ATCC 29627 IMET 7569 JCM 3228 KCC A-0228 12 more

NCBI tax ID(s) 1089453 36823

Special Collections DSMZ CCUG JCM KCTC CIP JMRC

History DSMZ <- JCM <- KCC <- M. Tsukamura, 3884, Nagura 8539 JCM <-- KCC A-0228 <-- M. Tsukamura 3884 (strain Nagura 8539). CIP <- 1984, ATCC <- M. Tsukamara: strain 3884, Rhodococcus sputi

Links

Gordonia sputi 3884 is a microaerophile, Gram-positive, rod-shaped bacterium that was isolated from sputum of patient with pulmonary disease.

Gram-positive rod-shaped microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 39624

ATCC 29627,CIP 100849,IMET 7569,JCM 3228,DSM 43896,CCM 3354,CCRC 13698,IFO 16049,KCTC 3436,CCUG 47138,NBRC 16049,NBRC 100414,BCRC 13698

@ref 20215

Last LPSN update 2026-05-29 08:27:21

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Gordoniaceae

Genus Gordonia

Species Gordonia sputi

Full scientific name Gordonia sputi corrig. (Tsukamura and Yano 1985 ex Tsukamura 1978) Stackebrandt et al. 1989

Synonyms (2)

Gordona sputi
Rhodococcus sputi

BacDive ID	Other strains from **Gordonia sputi** (16)	Type strain
10568	G. sputi S672, DSM 43022, KCC A-0019, NRRL B-1531, ...
10569	G. sputi N 647, DSM 43346, CMI 347, IMI 347, CIP 104633, ...
10571	G. sputi N935, DSM 43979, ATCC 33610, JCM 6048, CIP ...
10572	G. sputi E6324, DSM 44019, ATCC 33609, JCM 6047, CIP ...
10573	G. sputi S681, 495, Hirsch 495, DSM 46016, IMET 7173, ...
10574	G. sputi 6130, Gdf N931, N 931, DSM 46087, CIP 104651, ...
10628	G. sputi Georgia B-1048, N53, DSM 43007
147222	G. sputi CCUG 33089
147781	G. sputi CCUG 34215
148429	G. sputi CCUG 35424
148580	G. sputi CCUG 35666
148813	G. sputi CCUG 35998
151976	G. sputi CCUG 45412
154388	G. sputi CCUG 53357
155392	G. sputi CCUG 57593
165399	G. sputi JCM 6411

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
123278	positive	rod-shaped
125438			92.6
125438	positive		90.054
125439	positive		90.363

Colony morphology

123278

Hemolysis ability0

Multimedia

@ref:	11372
multimedia content:	DSM_43896.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_43896.jpg
caption:	Medium 535 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
11372	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
11372	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
40246	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
123278	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
11372	positive	growth	28
40246	positive	growth	30
57531	positive	growth	37
67770	positive	growth	28
123278	positive	growth	25-37
123278	negative	growth	10
123278	negative	growth	41
123278	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
57531	microaerophile
123278	aerobe
125438	aerobe	90.556
125439	obligate aerobe	98.607

Halophily

@ref	Salt	Growth	Tested relation	Concentration
123278	NaCl	positive	growth	0-10 %

Observation

67770

Observationquinones: MK-9(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
123278	16947 ChEBI	citrate	-	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
123278	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
123278	606565 ChEBI	hippurate	-	hydrolysis
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
123278	17632 ChEBI	nitrate	+	reduction
123278	17632 ChEBI	nitrate	-	respiration
123278	16301 ChEBI	nitrite	-	reduction
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
123278	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123278	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
123278	15688 ChEBI	acetoin	-
123278	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
123278	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
123278	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
123278	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
123278	caseinase	-	3.4.21.50
123278	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
123278	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
123278	gamma-glutamyltransferase	+	2.3.2.2
123278	gelatinase	+/-
123278	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
123278	lipase	-
68382	lipase (C 14)	-		from API zym
123278	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
123278	ornithine decarboxylase	-	4.1.1.17
123278	oxidase	-
123278	phenylalanine ammonia-lyase	-	4.3.1.24
123278	protease	-
68382	trypsin	-	3.4.21.4	from API zym
123278	tryptophan deaminase	-
123278	tween esterase	+/-
123278	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

Fatty acid profile

Metadata FA analysis

@ref

57531

Fatty acid	Percentage	ECL
C16:0	48.7	16
C18:1 ω9c	17.2	17.769
TBSA 10Me18:0	16.6	18.392
C18:2 ω6,9c/C18:0 ANTE	6.4	17.724
C18:0	2.8	18
C14:0	2.7	14
C16:0 anteiso	1	15.717
C15:0	0.9	15
C17:0	0.7	17
C17:1 ω9c	0.6	16.773
C10:0	0.6	10
C16:1 ω9c	0.5	15.774
Unidentified	0.5	19.458
C20:2 ω6,9c	0.4	19.735
C17:0 anteiso	0.3	16.722

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123278	-	-	+	+	-	+	-	-	-	-	+	+	-	-	-	+	+	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
123278	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
123278	not determinedn.d.	-	+	-	+	+	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-	+	-	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Inflammation	-
#Infection	#Patient	-
#Host Body-Site	#Oral cavity and airways	#Airways
#Host Body Product	#Fluids	#Sputum

Isolation

@ref	Sample type	Host species
11372	sputum of patient with pulmonary disease	Homo sapiens
57531	Human sputum	Homo sapiens
67770	Sputa of patients with pulmonary disease	Homo sapiens
123278	Human, Sputum	Homo sapiens

Taxonmaps

69479

Global distribution of 16S sequence X80634 (>99% sequence identity) for Gordonia from Microbeatlas

Aquatic Samples	1283
Soil Samples	169
Animal Samples	3862
Plant Samples	78
Total Samples	5392

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11372	2	Risk group (German classification) According to TRBA 466
123278	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1239625v1 assembly for Gordonia sputi ATCC 29627	contig	GCA_012396255	36823.3	8110747358	36823	68.48
67770	ASM24805v2 assembly for Gordonia sputi NBRC 100414	contig	GCA_000248055	1089453.3	2513237321	1089453	47.82

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Gordonia sputi strain ATCC 29627 16S ribosomal RNA gene, partial sequence	GQ871823	611	36823
20218	G.sputi 16S rRNA gene (ATCC 29627T)	X81923	1320	36823
20218	Gordonia sputi 16S rRNA gene, strain DSM43896T	X80634	1486	36823

GC content

@ref	GC-content (mol%)	Method
67770	66.7	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1239625v1 assembly for Gordonia sputi ATCC 29627
NCBI: GCA_012396255

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.61	no
125439	gram_stain	BacteriaNetⓘ	positive	90.36	no
125439	motility	BacteriaNetⓘ	no	85.10	no
125439	spore_formation	BacteriaNetⓘ	no	84.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Gordonia sputi NBRC 100414
PATRIC: 1089453.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.05	no
125438	anaerobic	anaerobicⓘ	no	96.45	yes
125438	spore-forming	spore-formingⓘ	no	53.65	no
125438	aerobic	aerobicⓘ	yes	90.56	no
125438	thermophilic	thermophileⓘ	no	97.00	no
125438	flagellated	motile2+ⓘ	no	92.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Focusing on Gordonia Infections: Distribution, Antimicrobial Susceptibilities and Phylogeny.	Pino-Rosa S, Medina-Pascual MJ, Carrasco G, Garrido N, Villalon P, Valiente M, Valdezate S.	Antibiotics (Basel)	10.3390/antibiotics12111568	2023
	Disease-Suppressive Soils-Beyond Food Production: a Critical Review.	Jayaraman S, Naorem AK, Lal R, Dalal RC, Sinha NK, Patra AK, Chaudhari SK.	J Soil Sci Plant Nutr	10.1007/s42729-021-00451-x	2021
	The Role of Serratomolide-like Amino Lipids Produced by Bacteria of Genus Serratia in Nematicidal Activity.	Marques-Pereira C, Proenca DN, Morais PV.	Pathogens	10.3390/pathogens11020198	2022
	In silico genome analysis reveals the metabolic versatility and biotechnology potential of a halotorelant phthalic acid esters degrading Gordonia alkanivorans strain YC-RL2.	Nahurira R, Wang J, Yan Y, Jia Y, Fan S, Khokhar I, Eltoukhy A.	AMB Express	10.1186/s13568-019-0733-5	2019
Enzymology	Purification, characterization and in-silico analysis of nitrilase from Gordonia terrae.	Kumar V, Seth A, Kumari V, Kumar V, Bhalla TC	Protein Pept Lett	10.2174/0929866521666140909154537	2015

References

#11372	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43896
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the JMRC: Jena Microbial Resource Collection (JMRC):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#40246	; Curators of the CIP;
#57531	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47138
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123278	Collection of Institut Pasteur ; Curators of the CIP; CIP 100849
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Gordonia sputi (DSM 43896, ATCC 29627, IMET 7569)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Fatty acid profile

API zym

API 50CHac

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_012396255

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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Social Media