Name: Gordonia terrae 3607 (70003)
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 10557

Type strain:

Species: Gordonia terrae

Strain Designation: 3607 (70003), N 890, N890 (R230), N 890 (R 230)

Culture col. no.: DSM 43975, CIP 104656, IMET 7429, Tsukamura 3607, Tsukamura 70003

Strain history: CIP <- 1995, DSM <- M. Goodfellow: strain N 890 (R 230) <- M. Tsukamura: strain 3607 (70003), Rhodococcus terrae

NCBI tax ID(s): 2055 (species)

SI-ID 50471

CIP 104656, DSM 43975, IMET 7429

Other strains from Gordonia terrae

G. terrae 3612, DSM 43249, ATCC 25594, NCTC ... (type strain)
G. terrae 3613, N662, T6, DSM 43342, CIP ...
G. terrae DSM 43568, SN 5302
G. terrae DSM 43569, SN 5303
G. terrae N 800, DSM 43964
G. terrae N 803, DSM 43965
G. terrae N 805, DSM 43966
G. terrae N 807, DSM 43967
G. terrae N 809, DSM 43968
G. terrae 3603, DSM 46040, IMET 7427, Tsukamura ...
G. terrae W 5381, CIP 104939
G. terrae 5382, CIP 104940
G. terrae CCUG 12164
G. terrae CCUG 37835
G. terrae CCUG 39088
G. terrae CCUG 44473
G. terrae CCUG 51493
G. terrae CCUG 61661

Section

Gordonia terrae 3607 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from soil.

Gram-positive
rod-shaped
mesophilic
obligate aerobe
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Gordoniaceae*
	Genus	*Gordonia*
	Species	**Gordonia terrae**
	Full Scientific Name (LPSN)	Gordonia terrae corrig. (Tsukamura 1971) Stackebrandt et al. 1989

	Synonym	"Gordona* terrae"*
	Synonym	Rhodococcus terrae

Information on morphological and physiological properties Morphology

[Ref.: #123456]	Gram stain	positive

[Ref.: #123456]	Cell shape	rod-shaped

[Ref.: #123456]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11311]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #11311]

Culture medium growth

[Ref.: #11311]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11311]

Culture medium composition

expand / minimize

[Ref.: #39072]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #39072]

Culture medium growth

[Ref.: #39072]

Culture medium composition

expand / minimize

[Ref.: #123456]

Culture medium

CIP Medium 3

[Ref.: #123456]

Culture medium growth

[Ref.: #123456]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #11311]		growth	37 °C
[Ref.: #39072]		growth	30 °C
[Ref.: #123456]		growth	10-41 °C
[Ref.: #123456]	no	growth	45 °C

[Ref.: #11311]	Temperature range	mesophilic
[Ref.: #39072]	Temperature range	mesophilic
[Ref.: #123456]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #123456]

Oxygen tolerance

obligate aerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #123456]	citrate ChEBI	+	carbon source
[Ref.: #123456]	esculin ChEBI	+	hydrolysis
[Ref.: #123456]	nitrate ChEBI	+	reduction
[Ref.: #123456]	nitrate ChEBI	-	respiration
[Ref.: #123456]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #123456]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #123456]		acetoin ChEBI	-
[Ref.: #123456]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123456]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123456]	amylase	-
[Ref.: #123456]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123456]	caseinase	-	3.4.21.50
[Ref.: #123456]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #123456]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #123456]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #123456]	gelatinase	-
[Ref.: #123456]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #123456]	lipase	-
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #123456]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123456]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123456]	oxidase	-
[Ref.: #123456]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #123456]	tryptophan deaminase	-
[Ref.: #123456]	tween esterase	-
[Ref.: #123456]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #123456]	753	not determinedn.d.	+	+	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	+	-	-	+	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123456]	8103	-	+	+	+	+	+	+	-	-	-	+	+	-	-	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11311]	Sample type/isolated from	soil

[Ref.: #123456]	Sample type/isolated from	Environment, Soil
[Ref.: #123456]	Isolation date	1979
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11311]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #123456]	Biosafety level	1	Risk group (French classification)

Availability in culture collections External links

[Ref.: #11311]

Culture collection no.

DSM 43975, CIP 104656, IMET 7429, Tsukamura 3607, Tsukamura 70003

[Ref.: #79833]

SI-ID 50471

References

#11311

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43975

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#39072 ; Curators of the CIP;

#68382

Automatically annotated from API zym .

#79833

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID50471.1 )

#123456 Collection of Institut Pasteur ; Curators of the CIP; CIP 104656
* These data were automatically processed and therefore are not curated

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