Microvirgula aerodenitrificans (DSM 15089, CIP 108159, LMG 18919)

Name: Microvirgula aerodenitrificans (DSM 15089, CIP 108159, LMG 18919)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 10522

Type strain

Strain Designation SGLY2

Culture col. no. DSM 15089 CIP 108159 LMG 18919 SGLY2 IAM 14991 1 more

NCBI tax ID(s) 1122240 57480

Special Collections DSMZ JCM CIP

History DSMZ <- LMG <- D. Patureau; SGLY2 JCM <-- IAM 14991 <-- LMG 18919 <-- D. Patureau SGLY2. CIP <- 2003, DSMZ <- LMG <- D. Patureau: strain SGLY2

Links

Microvirgula aerodenitrificans SGLY2 is an aerobe, Gram-negative, motile bacterium that was isolated from laboratory anoxic filter inoculated with activated sludge.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 12664

LMG 18919,DSM 15089,IAM 14991,CIP 108159,JCM 21462

@ref 20215

Last LPSN update 2026-05-29 08:27:21

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Neisseriales

Family Aquaspirillaceae

Genus Microvirgula

Species Microvirgula aerodenitrificans

Full scientific name Microvirgula aerodenitrificans Patureau et al. 1998

BacDive ID	Other strains from **Microvirgula aerodenitrificans** (2)	Type strain
10521	M. aerodenitrificans 104, DSM 736, ATCC 27510, CCUG 13793, CIP ...
152173	M. aerodenitrificans CCUG 45968

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
116065	negative	rod-shaped
125439	negative		98.062
125438	negative		98.976

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5702	MICROVIRGULA MEDIUM (DSMZ Medium 957)	Medium recipe at MediaDive	Name: MICROVIRGULA MEDIUM (DSMZ Medium 957) Composition: Sodium succinate 1.5 g/l KNO3 1.5 g/l (NH4)2SO4 1.0 g/l KH2PO4 0.82 g/l K2HPO4 0.7 g/l MgSO4 x 7 H2O 0.5 g/l Yeast extract 0.25 g/l Distilled water
5702	REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)	Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
42120	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116065	CIP Medium 328	Medium recipe at CIP
116065	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
5702	positive	growth	28
42120	positive	growth	30
67770	positive	growth	27
116065	positive	growth	15-37
116065	negative	growth	5
116065	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
5702	aerobe
5702	anaerobe
116065	facultative anaerobe
125439	aerobe	96.619

Spore formation

@ref	Spore formation	Confidence
125439		99.648
125438		90.857

Halophily

@ref	Salt	Growth	Tested relation	Concentration
116065	NaCl	positive	growth	0-4 %
116065	NaCl		growth	6 %
116065	NaCl		growth	8 %
116065	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
116065	17057 ChEBI	cellobiose	-	degradation
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
116065	16947 ChEBI	citrate	+	carbon source
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
116065	17108 ChEBI	D-arabinose	-	degradation
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68376	18333 ChEBI	D-arabitol	-	builds acid from	from API LIST
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
116065	15824 ChEBI	D-fructose	-	degradation
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
116065	17634 ChEBI	D-glucose	-	degradation
68371	17634 ChEBI	D-glucose	-	builds acid from	from API 50CH acid
68368	17634 ChEBI	D-glucose	-	fermentation	from API 20E
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
116065	16024 ChEBI	D-mannose	-	degradation
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68376	16988 ChEBI	D-ribose	-	builds acid from	from API LIST
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68376	16443 ChEBI	D-tagatose	-	builds acid from	from API LIST
68376	65327 ChEBI	D-xylose	-	builds acid from	from API LIST
116065	65327 ChEBI	D-xylose	-	degradation
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
116065	4853 ChEBI	esculin	-	hydrolysis
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68376	4853 ChEBI	esculin	-	hydrolysis	from API LIST
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
116065	17234 ChEBI	glucose	-	fermentation
68376	29042 ChEBI	glucose 1-phosphate	-	builds acid from	from API LIST
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68376	62345 ChEBI	L-rhamnose	-	builds acid from	from API LIST
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
116065	17716 ChEBI	lactose	-	degradation
116065	17716 ChEBI	lactose	-	fermentation
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68368	25094 ChEBI	lysine	-	degradation	from API 20E
116065	17306 ChEBI	maltose	-	degradation
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68376	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API LIST
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
116065	17632 ChEBI	nitrate	-	reduction
116065	17632 ChEBI	nitrate	+	respiration
68368	17632 ChEBI	nitrate	-	reduction	from API 20E
116065	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
116065	17814 ChEBI	salicin	-	degradation
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
116065	132112 ChEBI	sodium thiosulfate	-	builds gas from
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
116065	17992 ChEBI	sucrose	-	degradation
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
116065	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	17997 ChEBI	dinitrogen	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
116065	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E
68368	16301 ChEBI	nitrite	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
116065	15688 ChEBI	acetoin	-
68368	15688 ChEBI	acetoin	-			from API 20E
116065	17234 ChEBI	glucose		-
68368	35581 ChEBI	indole			-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116065	alcohol dehydrogenase	+	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68376	alpha-mannosidase	-	3.2.1.24	from API LIST
116065	amylase	-
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68382	beta-galactosidase	-	3.2.1.23	from API zym
116065	beta-galactosidase	-	3.2.1.23
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68382	beta-glucosidase	-	3.2.1.21	from API zym
68376	beta-glucosidase	-	3.2.1.21	from API LIST
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116065	caseinase	-	3.4.21.50
116065	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
116065	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
116065	gamma-glutamyltransferase	+	2.3.2.2
116065	gelatinase	-
68368	gelatinase	-		from API 20E
116065	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
116065	lipase	-
68382	lipase (C 14)	-		from API zym
116065	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
116065	ornithine decarboxylase	-	4.1.1.17
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
116065	oxidase	+
116065	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
116065	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
116065	tween esterase	-
116065	urease	-	3.5.1.5
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	denitrification	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	adipate degradation	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	teichoic acid biosynthesis	100	1 of 1
66794	L-lactaldehyde degradation	100	3 of 3
66794	valine metabolism	100	9 of 9
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	suberin monomers biosynthesis	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	ubiquinone biosynthesis	100	7 of 7
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	aerobactin biosynthesis	100	1 of 1
66794	threonine metabolism	100	10 of 10
66794	ethanol fermentation	100	2 of 2
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	leucine metabolism	92.31	12 of 13
66794	vitamin B1 metabolism	92.31	12 of 13
66794	vitamin B6 metabolism	90.91	10 of 11
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	gluconeogenesis	87.5	7 of 8
66794	propanol degradation	85.71	6 of 7
66794	photosynthesis	85.71	12 of 14
66794	phenylalanine metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	proline metabolism	81.82	9 of 11
66794	pentose phosphate pathway	81.82	9 of 11
66794	peptidoglycan biosynthesis	80	12 of 15
66794	heme metabolism	78.57	11 of 14
66794	citric acid cycle	78.57	11 of 14
66794	serine metabolism	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	lipid A biosynthesis	77.78	7 of 9
66794	purine metabolism	76.6	72 of 94
66794	vitamin B12 metabolism	76.47	26 of 34
66794	alanine metabolism	75.86	22 of 29
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	degradation of aromatic, nitrogen containing compounds	75	9 of 12
66794	isoleucine metabolism	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	biotin biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	ppGpp biosynthesis	75	3 of 4
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	tyrosine metabolism	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	propionate fermentation	70	7 of 10
66794	acetoin degradation	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	octane oxidation	66.67	2 of 3
66794	arginine metabolism	66.67	16 of 24
66794	flavin biosynthesis	66.67	10 of 15
66794	IAA biosynthesis	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	oxidative phosphorylation	65.93	60 of 91
66794	lipid metabolism	64.52	20 of 31
66794	ketogluconate metabolism	62.5	5 of 8
66794	pyrimidine metabolism	62.22	28 of 45
66794	methionine metabolism	61.54	16 of 26
66794	cysteine metabolism	61.11	11 of 18
66794	non-pathway related	60.53	23 of 38
66794	lipoate biosynthesis	60	3 of 5
66794	gallate degradation	60	3 of 5
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	glycine metabolism	60	6 of 10
66794	glycolysis	58.82	10 of 17
66794	histidine metabolism	58.62	17 of 29
66794	tryptophan metabolism	57.89	22 of 38
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	aspartate and asparagine metabolism	55.56	5 of 9
66794	nitrate assimilation	55.56	5 of 9
66794	phenol degradation	55	11 of 20
66794	lysine metabolism	54.76	23 of 42
66794	phenylpropanoid biosynthesis	53.85	7 of 13
66794	urea cycle	53.85	7 of 13
66794	sulfate reduction	53.85	7 of 13
66794	phenylmercury acetate degradation	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	quinate degradation	50	1 of 2
66794	glycogen biosynthesis	50	2 of 4
66794	cyclohexanol degradation	50	2 of 4
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	Entner Doudoroff pathway	50	5 of 10
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	polyamine pathway	47.83	11 of 23
66794	3-phenylpropionate degradation	46.67	7 of 15
66794	daunorubicin biosynthesis	44.44	4 of 9
66794	allantoin degradation	44.44	4 of 9
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	glutathione metabolism	42.86	6 of 14
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	D-cycloserine biosynthesis	40	2 of 5
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	carnitine metabolism	37.5	3 of 8
66794	sphingosine metabolism	33.33	2 of 6
66794	methane metabolism	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	pantothenate biosynthesis	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	ascorbate metabolism	31.82	7 of 22
66794	carotenoid biosynthesis	31.82	7 of 22
66794	degradation of sugar alcohols	31.25	5 of 16
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	coenzyme M biosynthesis	30	3 of 10
66794	bile acid biosynthesis, neutral pathway	29.41	5 of 17
66794	degradation of pentoses	28.57	8 of 28
66794	metabolism of disaccharids	27.27	3 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	toluene degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	degradation of hexoses	22.22	4 of 18
66794	4-hydroxymandelate degradation	22.22	2 of 9

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
116065	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116065	-	+	+	+	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
116065	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API LIST

@ref	Differentiation L. innocura(+)/ L.monoytogenes(-)DIM	ESC	alpha MAN	DARL	XYL	RHA	Acid from methyl-alpha-D-glucopyranosideMDG	RIB	G1P	TAG	beta hemolysis presentbeta HEM
116065	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
116065	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	+	-	+	+	+	-	+	+	+	-	+	-	-	-	-	+	+	+	+	+	+	-	+	+	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Laboratory	-
#Engineered	#Waste	#Activated sludge
#Condition	#Anoxic (anaerobic)	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5702	laboratory anoxic filter inoculated with activated sludge	Narbonne	France	FRA	Europe
67770	Upflow anoxic filter previously inoculated with activated sludge	Paris	France	FRA	Europe
116065	Environment, Laboratory anoxic filter inoculated with activated sludge

Taxonmaps

69479

Global distribution of 16S sequence U89333 (>99% sequence identity) for Microvirgula from Microbeatlas

Aquatic Samples	2210
Soil Samples	416
Animal Samples	1828
Plant Samples	321
Total Samples	4775

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5702	1	Risk group (German classification) According to TRBA 466
116065	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM62010v1 assembly for Microvirgula aerodenitrificans DSM 15089	scaffold	GCA_000620105	1122240.3	2556921007	1122240	63.71

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5702	Microvirgula aerodenitrificans 16S ribosomal RNA gene, partial sequence	U89333	1501		57480

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM62010v1 assembly for Microvirgula aerodenitrificans DSM 15089
BV-BRC: 1122240.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	96.62	no
125439	gram_stain	BacteriaNetⓘ	negative	98.06	no
125439	motility	BacteriaNetⓘ	yes	83.89	no
125439	spore_formation	BacteriaNetⓘ	no	99.65	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Microvirgula aerodenitrificans DSM 15089
PATRIC: 1122240.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.98	no
125438	anaerobic	anaerobicⓘ	no	91.27	no
125438	spore-forming	spore-formingⓘ	no	90.86	no
125438	aerobic	aerobicⓘ	yes	56.13	no
125438	thermophilic	thermophileⓘ	no	95.15	no
125438	flagellated	motile2+ⓘ	yes	78.20	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Diversity, Abundance, and Some Characteristics of Bacteria Isolated from Earth Material Consumed by Wild Animals at Kudurs in the Sikhote-Alin Mountains, Russia.	Lebedeva E, Panichev A, Kharitonova N, Kholodov A, Golokhvast K.	Int J Microbiol	10.1155/2020/8811047	2020
Pathogenicity	Structure and mechanism for iterative amide N-methylation in the biosynthesis of channel-forming peptide cytotoxins.	Cogan DP, Bhushan A, Reyes R, Zhu L, Piel J, Nair SK.	Proc Natl Acad Sci U S A	10.1073/pnas.2116578119	2022
Metabolism	Genome mining- and synthetic biology-enabled production of hypermodified peptides.	Bhushan A, Egli PJ, Peters EE, Freeman MF, Piel J.	Nat Chem	10.1038/s41557-019-0323-9	2019
	Recent Advances in Discovery, Bioengineering, and Bioactivity-Evaluation of Ribosomally Synthesized and Post-translationally Modified Peptides.	Zhong G, Wang ZJ, Yan F, Zhang Y, Huo L.	ACS Bio Med Chem Au	10.1021/acsbiomedchemau.2c00062	2023
	Uptake of carbamazepine by rhizomes and endophytic bacteria of Phragmites australis.	Sauvetre A, Schroder P.	Front Plant Sci	10.3389/fpls.2015.00083	2015
Enzymology	Recurrent Microvirgula aerodenitrificans bacteremia.	Murphy ME, Goodson A, Malnick H, Shah J, Neelamkavil R, Devi R.	J Clin Microbiol	10.1128/jcm.00392-12	2012
Genetics	Aquaspirillum dispar Hylemon et al. 1973 and Microvirgula aerodenitrificans Patureau et al. 1998 are subjective synonyms.	Cleenwerck I, De Wachter M, Hoste B, Janssens D, Swings J	Int J Syst Evol Microbiol	10.1099/ijs.0.02675-0	2003
Phylogeny	Microvirgula curvata sp. nov., isolated from hydrocarbon-contaminated soil, and emended description of the genus Microvirgula.	Subhash Y, Park MJ, Lee SS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001512	2016
Phylogeny	Microvirgula aerodenitrificans gen. nov., sp. nov., a new gram-negative bacterium exhibiting co-respiration of oxygen and nitrogen oxides up to oxygen-saturated conditions.	Patureau D, Godon JJ, Dabert P, Bouchez T, Bernet N, Delgenes JP, Moletta R	Int J Syst Bacteriol	10.1099/00207713-48-3-775	1998

References

#5702	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15089
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#42120	; Curators of the CIP;
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68371	Automatically annotated from API 50CH acid .
#68376	Automatically annotated from API LIST .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116065	Collection of Institut Pasteur ; Curators of the CIP; CIP 108159
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Microvirgula aerodenitrificans (DSM 15089, CIP 108159, LMG 18919)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API 20E

API zym

API 50CHac

API LIST

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000620105

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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