Vogesella mureinivorans (DSM 21247, LMG 25302, 389)

Name: Vogesella mureinivorans (DSM 21247, LMG 25302, 389)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 10510

Type strain

Strain Designation 389

Culture col. no. DSM 21247 LMG 25302 389

NCBI tax ID(s) 657276

Special Collections DSMZ Literature strains

History <- N. O. G. Jørgensen, Dept. Agriculture and Ecology, Fac. Life Sci., Univ. Copenhagen, Frederiksberg, Denmark; Isolate 389 <- M. Prahm

Links

Vogesella mureinivorans 389 is an anaerobe, Gram-negative, motile bacterium that was isolated from Lake water.

Gram-negative motile rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 401496

LMG 25302,DSM 21247

@ref 20215

Last LPSN update 2026-02-09 11:20:16

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Neisseriales

Family Chromobacteriaceae

Genus Vogesella

Species Vogesella mureinivorans

Full scientific name Vogesella mureinivorans Jørgensen et al. 2010

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29680	negative	2.7 µm	0.8 µm	rod-shaped
125439	negative				99.8
125439					92.6
125438	negative				99.5

Pigmentation

29680

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
15592	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
15592	positive	growth	28
29680	positive	growth	05-37
29680	positive	optimum	20-30

Culture pH

@ref	Ability	Type	PH	PH range
29680	positive	optimum	06-07
29680	positive	growth	06-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

29680

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
29680
125439		99.5

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29680	NaCl	positive	growth	0-1 %
29680	NaCl	positive	optimum	0.1 %

Observation

29680

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29680	30089 ChEBI	acetate	+	carbon source
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
29680	16449 ChEBI	alanine	+	carbon source
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
29680	22653 ChEBI	asparagine	+	carbon source
29680	35391 ChEBI	aspartate	+	carbon source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
29680	4853 ChEBI	esculin	+	hydrolysis
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
29680	15740 ChEBI	formate	+	carbon source
29680	28757 ChEBI	fructose	+	carbon source
29680	33984 ChEBI	fucose	+	carbon source
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
29680	24265 ChEBI	gluconate	+	carbon source
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
29680	17234 ChEBI	glucose	+	carbon source
29680	29987 ChEBI	glutamate	+	carbon source
29680	17754 ChEBI	glycerol	+	carbon source
29680	27570 ChEBI	histidine	+	carbon source
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
29680	24996 ChEBI	lactate	+	carbon source
29680	25017 ChEBI	leucine	+	carbon source
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
29680	29864 ChEBI	mannitol	+	carbon source
29680	51850 ChEBI	methyl pyruvate	+	carbon source
29680	506227 ChEBI	N-acetylglucosamine	+	carbon source
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
29680	50048 ChEBI	phenylethylamine	+	carbon source
29680	26271 ChEBI	proline	+	carbon source
29680	17272 ChEBI	propionate	+	carbon source
29680	30031 ChEBI	succinate	+	carbon source
68369	27897 ChEBI	tryptophan	+	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	+	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	+		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
15592	-	+	-	-	-	-	+	-	+	-	-	-	+	+	-	+	-	+	-	-	+
15592	-	+	-	-	-	-	+	-	+	-	-	-	+	+	-	+	-	+	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
15592	Lake water	Zealand, Lake Sjælsø	Denmark	DNK	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15592	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID
66792	ASM764403v2 assembly for Vogesella mureinivorans 389	contig	GCA_007644035	657276.4	2894007314	657276
66792	Vogesella mureinivorans strain 389	contig		657276.3		657276

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15592	Vogesella sp. 389 16S ribosomal RNA gene, partial sequence	GQ246809	1444		657276

GC content

@ref	GC-content (mol%)	Method
15592	62.1	high performance liquid chromatography (HPLC)
29680	61.2

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Vogesella mureinivorans 389
NCBI: GCA_007644035

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.50	no
125439	motility	BacteriaNetⓘ	yes	92.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	78.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vogesella mureinivorans strain 389
PATRIC: 657276.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	77.91	yes
125438	spore-forming	spore-formingⓘ	no	88.41	yes
125438	aerobic	aerobicⓘ	yes	67.44	no
125438	thermophilic	thermophileⓘ	no	99.45	yes
125438	flagellated	motile2+ⓘ	yes	79.26	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vogesella mureinivorans sp. nov., a peptidoglycan-degrading bacterium from lake water.	Jorgensen NOG, Brandt KK, Nybroe O, Hansen M	Int J Syst Evol Microbiol	10.1099/ijs.0.018630-0	2009

References

#15592	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21247
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26065	IJSEM 2467 2010 ( DOI 10.1099/ijs.0.018630-0 , PubMed 19946047 )
#29680	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26065
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Vogesella mureinivorans (DSM 21247, LMG 25302, 389)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_007644035

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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