Vogesella perlucida (DSM 22765, BCRC 17730, LMG 24214)

Name: Vogesella perlucida (DSM 22765, BCRC 17730, LMG 24214)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 10508

Type strain

Strain Designation DS-28

Culture col. no. DSM 22765 BCRC 17730 LMG 24214 DS-28

NCBI tax ID(s) 450366

Special Collections DSMZ Literature strains

History <- LMG <- W.-M. Chen, Natl. Kaohsiung Marine Univ. Taiwan

Links

Vogesella perlucida DS-28 is an aerobe, Gram-negative, motile bacterium that was isolated from spring water.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 309046

LMG 24214,BCRC 17730,DSM 22765

@ref 20215

Last LPSN update 2026-02-09 11:20:16

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Neisseriales

Family Chromobacteriaceae

Genus Vogesella

Species Vogesella perlucida

Full scientific name Vogesella perlucida Chou et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
32607	negative	01-02 µm	0.5 µm	rod-shaped
125438	negative				96
125439	negative				99.4
125439					90

Pigmentation

32607

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16504	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16504	positive	growth	28
32607	positive	growth	04-45
32607	positive	optimum	30

Culture pH

@ref	Ability	Type	PH	PH range
32607	positive	optimum	7.5
32607	positive	growth	07-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

32607

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
32607
125439		99.6

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32607	NaCl	positive	growth	0-2 %
32607	NaCl	positive	optimum	0.5 %

Observation

32607

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32607	30089 ChEBI	acetate	+	carbon source
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
32607	22599 ChEBI	arabinose	+	carbon source
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
32607	22653 ChEBI	asparagine	+	carbon source
32607	17057 ChEBI	cellobiose	+	carbon source
32607	16947 ChEBI	citrate	+	carbon source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
32607	15740 ChEBI	formate	+	carbon source
32607	28757 ChEBI	fructose	+	carbon source
32607	33984 ChEBI	fucose	+	carbon source
32607	28260 ChEBI	galactose	+	carbon source
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
32607	24265 ChEBI	gluconate	+	carbon source
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
32607	24996 ChEBI	lactate	+	carbon source
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
32607	29864 ChEBI	mannitol	+	carbon source
32607	37684 ChEBI	mannose	+	carbon source
32607	28053 ChEBI	melibiose	+	carbon source
32607	51850 ChEBI	methyl pyruvate	+	carbon source
32607	506227 ChEBI	N-acetylglucosamine	+	carbon source
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
32607	16634 ChEBI	raffinose	+	carbon source
32607	26546 ChEBI	rhamnose	+	carbon source
32607	30911 ChEBI	sorbitol	+	carbon source
32607	30031 ChEBI	succinate	+	carbon source
32607	17992 ChEBI	sucrose	+	carbon source
32607	27082 ChEBI	trehalose	+	carbon source
68369	27897 ChEBI	tryptophan	+	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
32607	17151 ChEBI	xylitol	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	+	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
32607	catalase	+	1.11.1.6
32607	cytochrome oxidase	+	1.9.3.1
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
16504	+	+	-	-	-	-	-	-	+	-	-	+	+	-	-	-	-	+	-	-	+
16504	+	+	-	-	-	-	-	-	+	-	-	+	+	-	-	-	-	+	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Spring

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16504	spring water	southern Taiwan, Tainan County	Taiwan, Province of China	TWN	Asia

Taxonmaps

69479

Global distribution of 16S sequence EF626691 (>99% sequence identity) for Vogesella from Microbeatlas

Aquatic Samples	2157
Soil Samples	125
Animal Samples	1175
Plant Samples	130
Total Samples	3587

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16504	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID
66792	ASM784415v2 assembly for Vogesella perlucida DS-28	contig	GCA_007844155	450366.3	450366

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16504	Vogesella perlucida strain DS-28 16S ribosomal RNA gene, partial sequence	EF626691	1414		450366

GC content

16504

GC-content (mol%)61.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Vogesella perlucida DS-28
NCBI: GCA_007844155

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.60	no
125439	motility	BacteriaNetⓘ	yes	90.00	no
125439	gram_stain	BacteriaNetⓘ	negative	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative aerobe	69.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vogesella perlucida strain DS-28
PATRIC: 450366.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.00	yes
125438	anaerobic	anaerobicⓘ	no	84.63	no
125438	spore-forming	spore-formingⓘ	no	87.17	no
125438	aerobic	aerobicⓘ	yes	73.08	yes
125438	thermophilic	thermophileⓘ	no	96.75	yes
125438	flagellated	motile2+ⓘ	yes	76.49	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Stable-Isotope Probing-Enabled Cultivation of the Indigenous Bacterium Ralstonia sp. Strain M1, Capable of Degrading Phenanthrene and Biphenyl in Industrial Wastewater.	Li J, Luo C, Zhang D, Cai X, Jiang L, Zhang G.	Appl Environ Microbiol	10.1128/aem.00511-19	2019
Phylogeny	Vogesella urethralis sp. nov., isolated from human urine, and emended descriptions of Vogesella perlucida and Vogesella mureinivorans.	Lan K, Cai YM, Li LH, Zeng JM, Yu XG, Qu PH, Li HL, Liu YY, Chen L, Chen C, Huang B	Int J Syst Evol Microbiol	10.1099/ijsem.0.003802	2020
Phylogeny	Description of Vogesella oryzae sp. nov., isolated from the rhizosphere of saline tolerant pokkali rice.	Rameshkumar N, Lang E, Tanaka N	Syst Appl Microbiol	10.1016/j.syapm.2015.10.003	2015
Phylogeny	Vogesella amnigena sp. nov., isolated from a freshwater river.	Chen WM, Chen JC, Wang C, Huang CW, Sheu SY	Int J Syst Evol Microbiol	10.1099/ijsem.0.000467	2015
Phylogeny	Vogesella mureinivorans sp. nov., a peptidoglycan-degrading bacterium from lake water.	Jorgensen NOG, Brandt KK, Nybroe O, Hansen M	Int J Syst Evol Microbiol	10.1099/ijs.0.018630-0	2009
Phylogeny	Vogesella lacus sp. nov., isolated from a soft-shell turtle culture pond.	Chou JH, Chou YJ, Arun AB, Young CC, Chen CA, Wang JT, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.009266-0	2009
Phylogeny	Vogesella perlucida sp. nov., a non-pigmented bacterium isolated from spring water.	Chou YJ, Chou JH, Lin MC, Arun AB, Young CC, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.65766-0	2008

References

#16504	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22765
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28820	IJSEM 2677 2008 ( DOI 10.1099/ijs.0.65766-0 , PubMed 19060039 )
#32607	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28820
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Vogesella perlucida (DSM 22765, BCRC 17730, LMG 24214)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_007844155

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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