Name: Vitreoscilla stercoraria DSM 513
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 10506

Type strain:

Species: Vitreoscilla stercoraria

Culture col. no.: DSM 513, ATCC 15218, SAG 1488-6

Strain history: <- SAG, 1488-6 <- E.G. Pringsheim

NCBI tax ID(s): 1123499 (strain), 61 (species)

SI-ID 5130

LMG 7756, ATCC 15218, DSM 513, SAG 1488-6

Section

Vitreoscilla stercoraria DSM 513 is a mesophilic, Gram-negative bacterium that was isolated from cow dung.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Neisseriales*
	Family	*Neisseriaceae*
	Genus	*Vitreoscilla*
	Species	**Vitreoscilla stercoraria**
	Full Scientific Name (LPSN)	Vitreoscilla stercoraria Pringsheim 1951 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.94

Information on culture and growth conditions Culture and growth conditions

[Ref.: #258]

Culture medium

CARYOPHANON LATUM MEDIUM (DSMZ Medium 34)

[Ref.: #258]

Culture medium growth

[Ref.: #258]

Culture medium link

Medium recipe at MediaDive

[Ref.: #258]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #258]			growth	26 °C

[Ref.: #258]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.956

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #258]	Sample type/isolated from	cow dung
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #258]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Vitreoscilla stercoraria 16S ribosomal RNA	L06174	1489	ENA	61 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Vitreoscilla stercoraria DSM 513	GCA_000382305	scaffold	GenBank	1123499 tax ID	*
[Ref.: #66792]	Vitreoscilla stercoraria DSM 513	1123499.3	wgs	PATRIC	1123499 tax ID	*
[Ref.: #66792]	Vitreoscilla stercoraria DSM 513	2521172651	draft	JGI IMG/M	1123499 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Vitreoscilla stercoraria DSM 513 DSM 513 NCBI: GCA_000382305.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Vitreoscilla stercoraria DSM 513 DSM 513 NCBI: GCA_000382305.1
[Ref.: #69480]	motile	no	88.647	no
[Ref.: #69480]	flagellated	no	95.576	no
[Ref.: #69480]	gram-positive	no	98.701	no
[Ref.: #69480]	anaerobic	no	97.949	no
[Ref.: #69480]	aerobic	yes	76.226	no
[Ref.: #69480]	halophile	no	90.61	no
[Ref.: #69480]	spore-forming	no	96.225	no
[Ref.: #69480]	thermophile	no	98.099	yes
[Ref.: #69480]	glucose-util	yes	61.086	no
[Ref.: #69480]	glucose-ferment	no	90.31	no

Availability in culture collections External links

[Ref.: #258]

Culture collection no.

DSM 513, ATCC 15218, SAG 1488-6

[Ref.: #79783]

SI-ID 5130

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Physiological studies on Vitreoscilla stercoraria.	Mayfield DC, Kester AS	J Bacteriol	10.1128/jb.112.3.1052-1056.1972	1972	*

References

#258	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 513

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#79783

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID5130.1 )

* These data were automatically processed and therefore are not curated

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Vitreoscilla stercoraria DSM 513 DSM 513

Vitreoscilla stercoraria DSM 513 DSM 513

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