Andreprevotia lacus (DSM 23236, BCRC 17832, LMG 24502)

Name: Andreprevotia lacus (DSM 23236, BCRC 17832, LMG 24502)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 10500

Type strain

Strain Designation GFC-1

Culture col. no. DSM 23236 BCRC 17832 LMG 24502 GFC-1

NCBI tax ID(s) 1121001 1121000

Special Collections DSMZ Literature strains

History <- LMG <- W.-M. Chen, Natl. Kaohsiung Marine Univ. Taiwan; GFC-1

Links

Andreprevotia lacus GFC-1 is an aerobe, Gram-negative, motile bacterium that was isolated from fish-culture pond.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 339715

LMG 24502,BCRC 17832,DSM 23236

@ref 20215

Last LPSN update 2026-02-09 11:20:16

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Neisseriales

Family Chromobacteriaceae

Genus Andreprevotia

Species Andreprevotia lacus

Full scientific name Andreprevotia lacus Sheu et al. 2009

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29238	negative	1.5 µm	0.5 µm	rod-shaped
125439	negative				96.6
125438	negative				97.494

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16703	REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)		Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16703	positive	growth	28
29238	positive	growth	15-37
29238	positive	optimum	30

Culture pH

@ref	Ability	Type	PH	PH range
29238	positive	optimum	7
29238	positive	growth	7.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

29238

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
29238
125439		98
125438		91.766

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29238	NaCl	positive	growth	0-1 %
29238	NaCl	positive	optimum	0.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29238	17128 ChEBI	adipate	+	carbon source
29238	22599 ChEBI	arabinose	+	carbon source
29238	16947 ChEBI	citrate	+	carbon source
29238	17234 ChEBI	glucose	+	carbon source
29238	25115 ChEBI	malate	+	carbon source
29238	17306 ChEBI	maltose	+	carbon source
29238	37684 ChEBI	mannose	+	carbon source
29238	17632 ChEBI	nitrate	+	reduction

Enzymes

@ref	Value	Activity	Ec
29238	acid phosphatase	+	3.1.3.2
29238	alkaline phosphatase	+	3.1.3.1
29238	catalase	+	1.11.1.6
29238	cytochrome oxidase	+	1.9.3.1
29238	urease	+	3.5.1.5

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	adipate degradation	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	biotin biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	enterobactin biosynthesis	100	3 of 3
66794	ethanol fermentation	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	ubiquinone biosynthesis	100	7 of 7
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	taurine degradation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	photosynthesis	92.86	13 of 14
66794	vitamin B1 metabolism	92.31	12 of 13
66794	phenylalanine metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	Entner Doudoroff pathway	90	9 of 10
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	heme metabolism	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	NAD metabolism	83.33	15 of 18
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	butanoate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	degradation of sugar alcohols	75	12 of 16
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	gluconeogenesis	75	6 of 8
66794	vitamin B6 metabolism	72.73	8 of 11
66794	purine metabolism	72.34	68 of 94
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	lysine metabolism	71.43	30 of 42
66794	glycolysis	70.59	12 of 17
66794	methionine metabolism	69.23	18 of 26
66794	glutamate and glutamine metabolism	67.86	19 of 28
66794	lipid metabolism	67.74	21 of 31
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	sulfoquinovose degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	cysteine metabolism	66.67	12 of 18
66794	flavin biosynthesis	66.67	10 of 15
66794	acetoin degradation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	oxidative phosphorylation	65.93	60 of 91
66794	alanine metabolism	65.52	19 of 29
66794	tyrosine metabolism	64.29	9 of 14
66794	citric acid cycle	64.29	9 of 14
66794	glutathione metabolism	64.29	9 of 14
66794	proline metabolism	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	tryptophan metabolism	63.16	24 of 38
66794	ketogluconate metabolism	62.5	5 of 8
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	pyrimidine metabolism	62.22	28 of 45
66794	leucine metabolism	61.54	8 of 13
66794	starch degradation	60	6 of 10
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	cellulose degradation	60	3 of 5
66794	propionate fermentation	60	6 of 10
66794	lipoate biosynthesis	60	3 of 5
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	propanol degradation	57.14	4 of 7
66794	histidine metabolism	55.17	16 of 29
66794	arginine metabolism	54.17	13 of 24
66794	urea cycle	53.85	7 of 13
66794	sulfate reduction	53.85	7 of 13
66794	phenylmercury acetate degradation	50	1 of 2
66794	toluene degradation	50	2 of 4
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	ribulose monophosphate pathway	50	1 of 2
66794	nitrate assimilation	44.44	4 of 9
66794	aclacinomycin biosynthesis	42.86	3 of 7
66794	glycine betaine biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	vitamin K metabolism	40	2 of 5
66794	O-antigen biosynthesis	40	2 of 5
66794	3-phenylpropionate degradation	40	6 of 15
66794	glycine metabolism	40	4 of 10
66794	degradation of pentoses	39.29	11 of 28
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	carotenoid biosynthesis	36.36	8 of 22
66794	cholesterol biosynthesis	36.36	4 of 11
66794	polyamine pathway	34.78	8 of 23
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	pantothenate biosynthesis	33.33	2 of 6
66794	1,4-dihydroxy-6-naphthoate biosynthesis	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	arachidonic acid metabolism	33.33	6 of 18
66794	vitamin B12 metabolism	29.41	10 of 34
66794	degradation of sugar acids	28	7 of 25
66794	degradation of hexoses	27.78	5 of 18
66794	metabolism of disaccharids	27.27	3 of 11
66794	d-xylose degradation	27.27	3 of 11
66794	ascorbate metabolism	27.27	6 of 22
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	alginate biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	phenol degradation	25	5 of 20
66794	cyclohexanol degradation	25	1 of 4
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	4-hydroxymandelate degradation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Aquaculture
#Environmental	#Aquatic	#Pond (small)
#Host	#Fishes	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16703	fish-culture pond	Taoyuan County	Taiwan, Province of China	TWN	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU287926 (>99% sequence identity) for Andreprevotia lacus subclade from Microbeatlas

Aquatic Samples	386
Soil Samples	668
Animal Samples	623
Plant Samples	102
Total Samples	1779

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16703	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2568526002 annotated assembly for Andreprevotia lacus DSM 23236	scaffold	GCA_900176275	1121001.3	2568526002	1121001	57.72

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16703	Neisseriaceae bacterium GFC-1 16S ribosomal RNA gene, partial sequence	EU287926	1398		1121000

GC content

@ref	GC-content (mol%)
16703	63.0
29238	63

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Andreprevotia lacus DSM 23236
NCBI: GCA_900176275

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.00	no
125439	motility	BacteriaNetⓘ	yes	88.00	no
125439	gram_stain	BacteriaNetⓘ	negative	96.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	88.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Andreprevotia lacus DSM 23236 DSM 23236
NCBI: GCA_900176275.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.49	yes
125438	anaerobic	anaerobicⓘ	no	93.82	yes
125438	aerobic	aerobicⓘ	yes	66.71	yes
125438	spore-forming	spore-formingⓘ	no	91.77	yes
125438	thermophilic	thermophileⓘ	no	96.92	yes
125438	flagellated	motile2+ⓘ	yes	73.37	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Andreprevotia lacus sp. nov., isolated from a fish-culture pond.	Sheu SY, Chiu TF, Chou JH, Sheu DS, Arun AB, Young CC, Chen CA, Wang JT, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.009233-0	2009

References

#16703	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23236
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25658	IJSEM 2482 2009 ( DOI 10.1099/ijs.0.009233-0 , PubMed 19622669 )
#29238	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25658
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Andreprevotia lacus (DSM 23236, BCRC 17832, LMG 24502)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900176275

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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