Name: Neisseria subflava 37
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 10478

Type strain:

Species: Neisseria subflava

Strain Designation: 37

Culture col. no.: DSM 17610, ATCC 49275, CCUG 23930, CIP 103343, LMG 5313, NRL 30017, LMG 5921, CCM 4407

Strain history: CIP <- 1989, S.J. Barrett, Leicester Univ., UK: strain U37, Neisseria subflava var. flava

NCBI tax ID(s): 28449 (species)

SI-ID 311042

LMG 5313, ATCC 49275, LMG 5291, CCUG 23930, CCM 4407, CCUG 24960, ATCC 49277, CIP 103343, DSM 17610

Special Collections

Other strains from Neisseria subflava

Section

When using BacDive for research please cite our paper

Neisseria subflava 37 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from throat.

coccus-shaped
Gram-negative
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Neisseriales*
	Family	*Neisseriaceae*
	Genus	*Neisseria*
	Species	**Neisseria subflava**
	Full Scientific Name (LPSN)	Neisseria subflava (Flügge 1886) Trevisan 1889 (Approved Lists 1980)

Synonym

"Micrococcus subflavus"

Information on morphological and physiological properties Morphology

[Ref.: #123344]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %99

[Ref.: #123344]	Cell shape	coccus-shaped

[Ref.: #7083]	Type of hemolysis	gamma
[Ref.: #7083]	Incubation period	1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7083]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #7083]

Culture medium growth

[Ref.: #7083]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7083]

Culture medium composition

expand / minimize

[Ref.: #40536]

Culture medium

MEDIUM 6 - Columbia agar with 10 % horse blood

[Ref.: #40536]

Culture medium growth

[Ref.: #40536]

Culture medium composition

expand / minimize

[Ref.: #123344]

Culture medium

CIP Medium 6

[Ref.: #123344]

Culture medium growth

[Ref.: #123344]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #7083]		growth	30 °C
[Ref.: #40536]		growth	30 °C
[Ref.: #123344]		growth	30-41 °C
[Ref.: #123344]	no	growth	22 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #123344]	Oxygen tolerance	obligate aerobe
[Ref.: #125439]	Oxygen tolerance	microaerophile Confidence in %97.7

[Ref.: #125439]	Ability of spore formation	no Confidence in %99.1
[Ref.: #125438]	Ability of spore formation	no Confidence in %92.242

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #123344]	nitrate ChEBI	-	reduction
[Ref.: #123344]	nitrite ChEBI	+	reduction
[Ref.: #68377]	ornithine ChEBI	-	degradation	* from API NH
[Ref.: #68377]	tryptophan ChEBI	-	energy source	* from API NH
[Ref.: #68377]	urea ChEBI	-	hydrolysis	* from API NH

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #123344]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite	Production
[Ref.: #123344]	indole ChEBI	no
[Ref.: #123344]	polysaccharides	no
[Ref.: #68377]	indole ChEBI	no	* from API NH

	Physiological tests	Metabolite	Indole test
[Ref.: #68377]		indole ChEBI	-	* from API NH

	Enzyme	Enzyme activity	EC number
[Ref.: #123344]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68377]	alkaline phosphatase	-	3.1.3.1	* from API NH
[Ref.: #123344]	amylase	-
[Ref.: #123344]	beta-galactosidase	+	3.2.1.23
[Ref.: #7083]	catalase	+	1.11.1.6
[Ref.: #123344]	catalase	+	1.11.1.6
[Ref.: #7083]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #123344]	DNase	-
[Ref.: #123344]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #68377]	gamma-glutamyltransferase	-	2.3.2.2	* from API NH
[Ref.: #123344]	lecithinase	-
[Ref.: #68377]	lipase	-		* from API NH
[Ref.: #123344]	lysine decarboxylase	-	4.1.1.18
[Ref.: #123344]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #68377]	ornithine decarboxylase	-	4.1.1.17	* from API NH
[Ref.: #123344]	oxidase	+
[Ref.: #68377]	tryptophan deaminase	-	4.1.99.1	* from API NH
[Ref.: #123344]	tween esterase	+
[Ref.: #123344]	urease	-	3.5.1.5
[Ref.: #68377]	urease	-	3.5.1.5	* from API NH
	Only first 10 entries are displayed. Click here to see all.

API® NH:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Penicillinase productionPEN	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from maltoseMAL	Acid from sucroseSAC	Ornithine decarboxylaseODC	Urease/urea hydrolysisURE	LipaseLIP	Alkaline phosphatasePAL	beta-Galactosidasebeta GAL	Proline arylamidaseProA	gamma-Glutamyl transferaseGGT	Indole productionIND
[Ref.: #7083]	6754	+	-	+	-	-	-	-	-	-	+	-	-	-
[Ref.: #7083]	6753	-	-	-	+	-	-	-	-	-	-	-	-	-
[Ref.: #7083]	6434	-	+	-	+	-	-	-	-	-	-	+	-	-
[Ref.: #7083]	6433	-	-	-	-	+	-	-	-	-	-	-	-	-
[Ref.: #7083]	6964	-	+	+	+	+/-	-	-	-	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7083]	Sample type/isolated from	throat
[Ref.: #7083]	Continent	Europe

[Ref.: #47892]	Sample type/isolated from	Human throat

[Ref.: #123344]	Sample type/isolated from	Human, Throat
[Ref.: #123344]	Geographic location (country and/or sea, region)	England
[Ref.: #123344]	Country	United Kingdom
[Ref.: #123344]	Country ISO 3 Code	GBR
[Ref.: #123344]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host Body-Site

#Oral cavity and airways

#Throat

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7083]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #123344]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7083]	Neisseria subflava 16S rRNA gene, partial	AJ247249	457	GenBank ENA	28449 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Neisseria subflava ATCC 49275	GCA_005221305	complete	GenBank ENA	28449 tax ID	*
[Ref.: #66792]	Neisseria subflava strain ATCC 49275	28449.200	complete	PATRIC	28449 tax ID	*
[Ref.: #66792]	Neisseria subflava ATCC 49275	2877215797	complete	JGI IMG/M	28449 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Neisseria subflava ATCC 49275 NCBI: GCA_005221305.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	99	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	92.411	yes
[Ref.: #125438]	aerobic	aerobicⓘ	yes	50.353	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	92.242	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	98.482	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	86.496	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Neisseria subflava strain ATCC 49275 PATRIC: 28449.200
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	99.1
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	89.3
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	80.4
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	microaerophile	97.7

Availability in culture collections External links

[Ref.: #7083]

Culture collection no.

DSM 17610, ATCC 49275, CCUG 23930, CIP 103343, LMG 5313, NRL 30017, LMG 5921, CCM 4407

[Ref.: #79755]

SI-ID 311042

References

#7083

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17610

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#40536 ; Curators of the CIP;
#47892 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 23930

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68377

Automatically annotated from API NH .

#79755

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID311042.1 )

#123344 Collection of Institut Pasteur ; Curators of the CIP; CIP 103343

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Neisseria subflava ATCC 49275

Neisseria subflava strain ATCC 49275

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