Nautilia abyssi (DSM 21157, JCM 15390, PH1209)

Name: Nautilia abyssi (DSM 21157, JCM 15390, PH1209)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 10431

Type strain

Strain Designation PH1209

Culture col. no. DSM 21157 JCM 15390 PH1209

NCBI tax ID(s) 498371

Special Collections DSMZ JCM Literature strains

Links

Nautilia abyssi PH1209 is an anaerobe, thermophilic, Gram-negative prokaryote that was isolated from hydrothermal chimney sample.

Gram-negative motile rod-shaped anaerobe thermophilic 16S sequence

Name and taxonomic classification

SI-ID 396607

JCM 15390,DSM 21157

@ref 20215

Last LPSN update 2025-12-16 09:49:20

Domain Pseudomonadati

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Nautiliales

Family Nautiliaceae

Genus Nautilia

Species Nautilia abyssi

Full scientific name Nautilia abyssi Alain et al. 2009

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
29070	negative	1.6 µm	0.4 µm	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
15569	DESULFUROBACTERIUM MEDIUM (DSMZ Medium 829)		Medium recipe at MediaDive	Name: DESULFUROBACTERIUM MEDIUM (DSMZ Medium 829) Composition: Sea Salt 29.8507 g/l Sulfur 9.95025 g/l MES [2-(N-morpholino) ethane sulfonic acid] 1.9403 g/l NH4Cl 0.995025 g/l Na2CO3 0.497512 g/l KH2PO4 0.348259 g/l Na2S2O4 0.0497512 g/l NaHCO3 0.0497512 g/l Succinic acid 0.00597015 g/l Isobutyric acid 0.00497512 g/l 2-Methylbutyric acid 0.00497512 g/l Valeric acid 0.00497512 g/l 3-Methylbutyric acid 0.00497512 g/l HCl 0.00248756 g/l Caproic acid 0.00199005 g/l FeCl2 x 4 H2O 0.00149254 g/l Sodium resazurin 0.000497512 g/l NaOH 0.000497512 g/l Pyridoxine hydrochloride 0.000298507 g/l Nicotinic acid 0.000199005 g/l Thiamine-HCl x 2 H2O 0.000199005 g/l CoCl2 x 6 H2O 0.000189055 g/l MnCl2 x 4 H2O 9.95025e-05 g/l Calcium pantothenate 9.95025e-05 g/l Vitamin B12 9.95025e-05 g/l p-Aminobenzoic acid 7.9602e-05 g/l ZnCl2 6.96517e-05 g/l Na2MoO4 x 2 H2O 3.58209e-05 g/l NiCl2 x 6 H2O 2.38806e-05 g/l D-(+)-biotin 1.99005e-05 g/l H3BO3 5.97015e-06 g/l Na2WO4 x 2 H2O 3.9801e-06 g/l Na2SeO3 x 5 H2O 2.98507e-06 g/l CuCl2 x 2 H2O 1.99005e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
15569	positive	growth	60	thermophilic
29070	positive	growth	33-65
29070	positive	optimum	60	thermophilic
67770	positive	growth	60	thermophilic

Culture pH

@ref	Ability	Type	PH
29070	positive	optimum	6.25
29070	positive	growth	5.0-8.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
15569	anaerobe
29070	anaerobe

Spore formation

29070

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29070	NaCl	positive	growth	2.0-4.0 %
29070	NaCl	positive	optimum	3 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29070	29987 ChEBI	glutamate	+	carbon source
29070	16199 ChEBI	urea	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
29070	16136 ChEBI	hydrogen sulfide

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Hydrothermal vent
#Condition	#Thermophilic (>45°C)	-

Isolation

@ref	Sample type	Geographic location	Latitude	Longitude
15569	hydrothermal chimney sample	East Pacific Rise 13° N	13	-103.568 13/-103.568
67770	Active deep-sea hydrothermal chimney on the East Pacific Rise

Taxonmaps

69479

Global distribution of 16S sequence AM937002 (>99% sequence identity) for Nautilia abyssi from Microbeatlas

Aquatic Samples	6
Soil Samples
Animal Samples	1
Plant Samples
Total Samples	7

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15569	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15569	Nautilia abyssi partial 16S rRNA gene, type strain PH1209T	AM937002	1369		498371

GC content

@ref	GC-content (mol%)	Method
15569	35	high performance liquid chromatography (HPLC)
29070	35

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nautilia nitratireducens sp. nov., a thermophilic, anaerobic, chemosynthetic, nitrate-ammonifying bacterium isolated from a deep-sea hydrothermal vent.	Perez-Rodriguez I, Ricci J, Voordeckers JW, Starovoytov V, Vetriani C	Int J Syst Evol Microbiol	10.1099/ijs.0.013904-0	2009
Phylogeny	Nautilia abyssi sp. nov., a thermophilic, chemolithoautotrophic, sulfur-reducing bacterium isolated from an East Pacific Rise hydrothermal vent.	Alain K, Callac N, Guegan M, Lesongeur F, Crassous P, Cambon-Bonavita MA, Querellou J, Prieur D	Int J Syst Evol Microbiol	10.1099/ijs.0.005454-0	2009

References

#15569	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21157
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25500	IJSEM 1310 2009 ( DOI 10.1099/ijs.0.005454-0 , PubMed 19502307 )
#29070	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25500
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nautilia abyssi (DSM 21157, JCM 15390, PH1209)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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