Caminibacter profundus (DSM 15016, CR, JCM 11957)

Name: Caminibacter profundus (DSM 15016, CR, JCM 11957)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 10427

Type strain

Strain Designation CR

Culture col. no. DSM 15016 CR JCM 11957

NCBI tax ID(s) 217041

Special Collections DSMZ JCM Literature strains

Links

Caminibacter profundus CR is an anaerobe, thermophilic, Gram-negative prokaryote that was isolated from content of a vent cap.

Gram-negative motile rod-shaped anaerobe thermophilic 16S sequence

Name and taxonomic classification

SI-ID 130836

DSM 15016,JCM 11957

@ref 20215

Last LPSN update 2025-12-16 09:49:20

Domain Pseudomonadati

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Nautiliales

Family Nautiliaceae

Genus Caminibacter

Species Caminibacter profundus

Full scientific name Caminibacter profundus Miroshnichenko et al. 2004

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
29965	negative	1.2-1.5 µm	0.5 µm	rod-shaped

Pigmentation

29965

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5669	DESULFUROBACTERIUM MEDIUM (DSMZ Medium 829)		Medium recipe at MediaDive	Name: DESULFUROBACTERIUM MEDIUM (DSMZ Medium 829) Composition: Sea Salt 29.8507 g/l Sulfur 9.95025 g/l MES [2-(N-morpholino) ethane sulfonic acid] 1.9403 g/l NH4Cl 0.995025 g/l Na2CO3 0.497512 g/l KH2PO4 0.348259 g/l Na2S2O4 0.0497512 g/l NaHCO3 0.0497512 g/l Succinic acid 0.00597015 g/l Isobutyric acid 0.00497512 g/l 2-Methylbutyric acid 0.00497512 g/l Valeric acid 0.00497512 g/l 3-Methylbutyric acid 0.00497512 g/l HCl 0.00248756 g/l Caproic acid 0.00199005 g/l FeCl2 x 4 H2O 0.00149254 g/l Sodium resazurin 0.000497512 g/l NaOH 0.000497512 g/l Pyridoxine hydrochloride 0.000298507 g/l Nicotinic acid 0.000199005 g/l Thiamine-HCl x 2 H2O 0.000199005 g/l CoCl2 x 6 H2O 0.000189055 g/l MnCl2 x 4 H2O 9.95025e-05 g/l Calcium pantothenate 9.95025e-05 g/l Vitamin B12 9.95025e-05 g/l p-Aminobenzoic acid 7.9602e-05 g/l ZnCl2 6.96517e-05 g/l Na2MoO4 x 2 H2O 3.58209e-05 g/l NiCl2 x 6 H2O 2.38806e-05 g/l D-(+)-biotin 1.99005e-05 g/l H3BO3 5.97015e-06 g/l Na2WO4 x 2 H2O 3.9801e-06 g/l Na2SeO3 x 5 H2O 2.98507e-06 g/l CuCl2 x 2 H2O 1.99005e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5669	positive	growth	55	thermophilic
29965	positive	growth	45-65	thermophilic
29965	positive	optimum	55	thermophilic
67770	positive	growth	55	thermophilic

Culture pH

@ref	Ability	Type	PH
29965	positive	optimum	6.9-7.1
29965	positive	growth	6.5-7.4

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
5669	anaerobe
29965	anaerobe

Spore formation

29965

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29965	NaCl	positive	growth	0.5-5.0 %
29965	NaCl	positive	optimum	3 %

Metabolite production

@ref	Chebi-ID	Metabolite	Production
29965	16136 ChEBI	hydrogen sulfide

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Built environment	-
#Engineered	#Laboratory	#Lab enrichment
#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Latitude	Longitude
5669	content of a vent cap	Mid-Atlantic Ridge, Rainbow hydrothermal vent field	36.2667	-33.9 36.2667/-33.9
67770	Deep-sea hydrothermal vent site on the Mid-Atlantic Ridge

Taxonmaps

69479

Global distribution of 16S sequence AJ535664 (>99% sequence identity) for Caminibacter profundus subclade from Microbeatlas

Aquatic Samples	69
Soil Samples
Animal Samples	15
Plant Samples
Total Samples	84

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5669	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5669	Caminibacter sp. CR 16S rRNA gene, strain CR	AJ535664	1485		217041

GC content

@ref	GC-content (mol%)	Method
5669	32.1
67770	32.1	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Caminibacter profundus sp. nov., a novel thermophile of Nautiliales ord. nov. within the class 'Epsilonproteobacteria', isolated from a deep-sea hydrothermal vent.	Miroshnichenko ML, L'Haridon S, Schumann P, Spring S, Bonch-Osmolovskaya EA, Jeanthon C, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.02753-0	2004

References

#5669	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15016
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26334	IJSEM 41 2004 ( DOI 10.1099/ijs.0.02753-0 , PubMed 14742457 )
#29965	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26334
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Caminibacter profundus (DSM 15016, CR, JCM 11957)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite production

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

Help

Social Media