Nannocystis exedens subsp. aggregans Na a1 | DSM 14639 | BacDiveID:10321

Strain identifier

BacDive ID: 10321

Type strain:

Species: Nannocystis exedens subsp. aggregans

Strain Designation: Na a1

Culture col. no.: DSM 14639

Strain history: <- H. Reichenbach; Na a1 <- H. J. Vockerodt

NCBI tax ID(s): 54 (species)

Other strains from Nannocystis exedens subsp. aggregans

N. exedens subsp. aggregans Na a2, DSM 52940
N. exedens subsp. aggregans Na a6, DSM 52941
N. exedens subsp. aggregans Na a8, DSM 52942
N. exedens subsp. aggregans Na a9, DSM 52943
N. exedens subsp. aggregans Na a10, DSM 52944
N. exedens subsp. aggregans Na a11, DSM 52945
N. exedens subsp. aggregans Na a12, DSM 52946
N. exedens subsp. aggregans Na a13, DSM 52947
N. exedens subsp. aggregans Na a14, DSM 52948
N. exedens subsp. aggregans Na a15, DSM 52949
N. exedens subsp. aggregans Na a16, DSM 52950
N. exedens subsp. aggregans Na a17, DSM 52951
N. exedens subsp. aggregans Na a18, DSM 52952
N. exedens subsp. aggregans Na a19, DSM 52953
N. exedens subsp. aggregans Na a21, DSM 52954
N. exedens subsp. aggregans Na a22, DSM 52955
N. exedens subsp. aggregans Na a23, DSM 52956
N. exedens subsp. aggregans Na a24, DSM 52957
N. exedens subsp. aggregans Na a25, DSM 52958
N. exedens subsp. aggregans Na a26, DSM 52959
N. exedens subsp. aggregans Na a27, DSM 52960
N. exedens subsp. aggregans Na a28, DSM 52961
N. exedens subsp. aggregans Na a29, DSM 52962
N. exedens subsp. aggregans Na a61, DSM 52963
N. exedens subsp. aggregans Na a84, DSM 52964
N. exedens subsp. aggregans Na a86, DSM 52965
N. exedens subsp. aggregans Na a87, DSM 52966
N. exedens subsp. aggregans Na a88, DSM 52967
N. exedens subsp. aggregans Na a89, DSM 52968
N. exedens subsp. aggregans Na a181, DSM 52969
N. exedens subsp. aggregans Na a182, DSM 52970
N. exedens subsp. aggregans Na a183, DSM 52971
N. exedens subsp. aggregans Na a185, DSM 52972
N. exedens subsp. aggregans Na a187, DSM 52973
N. exedens subsp. aggregans Na a188, DSM 52974
N. exedens subsp. aggregans Na a190, DSM 52975
N. exedens subsp. aggregans Na a191, DSM 52976
N. exedens subsp. aggregans Na a192, DSM 52977

Section

Nannocystis exedens subsp. aggregans Na a1 is a mesophilic bacterium that builds a fruiting body and was isolated from soil with decaying plant material.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Myxococcales*
	Family	*Nannocystaceae*
	Genus	*Nannocystis*
	Species	"Nannocystis exedens subsp. aggregans"
	Full Scientific Name (LPSN)	Nannocystis exedens subsp. aggregans Reichenbach 2005

Information on morphological and physiological properties Morphology

[Ref.: #18281]	Multicellular complex forming ability	yes *
[Ref.: #18281]	Multicellular complex name	fruiting body *

Multimedia content

Caption:

Na a1; DSM 14639

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Caption:

Na a1; DSM 14639

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Caption:

Na a1; DSM 14639

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Caption:

Na a1; DSM 14639

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Caption:

Na a1; DSM 14639

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Caption:

Na a1; DSM 14639

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Caption:

Na a1; DSM 14639

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Caption:

Na a1; DSM 14639

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Caption:

Na a1; DSM 14639

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Caption:

Na a1; DSM 14639

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Caption:

Na a1; DSM 14639

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Caption:

Na a1; DSM 14639

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Caption:

Na a1; DSM 14639

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Caption:

Na a1; DSM 14639

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Caption:

Na a1; DSM 14639

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

Culture medium

AGAR WITH E. COLI AS FEED (DSMZ Medium 942)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

VY/2 AGAR (DSMZ Medium 9)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5425]			growth	30 °C

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Pathway	Enzyme coverage	Annotated reactions	External links
	Pathway annotation	Computationally determined by
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	glycine betaine biosynthesis	100	5 of 5
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	aspartate and asparagine metabolism	100	9 of 9
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	aerobactin biosynthesis	100	1 of 1
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	ceramide biosynthesis	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	alanine metabolism	86.21	25 of 29
[Ref.: #66794]	ubiquinone biosynthesis	85.71	6 of 7
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	selenocysteine biosynthesis	83.33	5 of 6
[Ref.: #66794]	cholesterol biosynthesis	81.82	9 of 11
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	hydrogen production	80	4 of 5
[Ref.: #66794]	starch degradation	80	8 of 10
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	phenylacetate degradation (aerobic)	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	tryptophan metabolism	78.95	30 of 38
[Ref.: #66794]	glutamate and glutamine metabolism	78.57	22 of 28
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	pyrimidine metabolism	77.78	35 of 45
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	urea cycle	76.92	10 of 13
[Ref.: #66794]	methionine metabolism	76.92	20 of 26
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	catecholamine biosynthesis	75	3 of 4
[Ref.: #66794]	purine metabolism	74.47	70 of 94
[Ref.: #66794]	lipid metabolism	74.19	23 of 31
[Ref.: #66794]	vitamin B6 metabolism	72.73	8 of 11
[Ref.: #66794]	metabolism of disaccharids	72.73	8 of 11
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	arachidonic acid metabolism	72.22	13 of 18
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	71.43	5 of 7
[Ref.: #66794]	citric acid cycle	71.43	10 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	71.43	10 of 14
[Ref.: #66794]	non-pathway related	71.05	27 of 38
[Ref.: #66794]	arginine metabolism	70.83	17 of 24
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	lysine metabolism	66.67	28 of 42
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	chlorophyll metabolism	66.67	12 of 18
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	lipid A biosynthesis	66.67	6 of 9
[Ref.: #66794]	IAA biosynthesis	66.67	2 of 3
[Ref.: #66794]	histidine metabolism	65.52	19 of 29
[Ref.: #66794]	polyamine pathway	65.22	15 of 23
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	64.71	11 of 17
[Ref.: #66794]	glutathione metabolism	64.29	9 of 14
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	62.5	5 of 8
[Ref.: #66794]	factor 420 biosynthesis	60	3 of 5
[Ref.: #66794]	flavin biosynthesis	60	9 of 15
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	benzoyl-CoA degradation	57.14	4 of 7
[Ref.: #66794]	tyrosine metabolism	57.14	8 of 14
[Ref.: #66794]	degradation of sugar alcohols	56.25	9 of 16
[Ref.: #66794]	androgen and estrogen metabolism	56.25	9 of 16
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	daunorubicin biosynthesis	55.56	5 of 9
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	ascorbate metabolism	54.55	12 of 22
[Ref.: #66794]	phenylpropanoid biosynthesis	53.85	7 of 13
[Ref.: #66794]	3-phenylpropionate degradation	53.33	8 of 15
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	acetate fermentation	50	2 of 4
[Ref.: #66794]	phenol degradation	50	10 of 20
[Ref.: #66794]	carnitine metabolism	50	4 of 8
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	carotenoid biosynthesis	50	11 of 22
[Ref.: #66794]	sphingosine metabolism	50	3 of 6
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	isoprenoid biosynthesis	50	13 of 26
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	oxidative phosphorylation	43.96	40 of 91
[Ref.: #66794]	cardiolipin biosynthesis	42.86	3 of 7
[Ref.: #66794]	aclacinomycin biosynthesis	42.86	3 of 7
[Ref.: #66794]	D-cycloserine biosynthesis	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	gallate degradation	40	2 of 5
[Ref.: #66794]	creatinine degradation	40	2 of 5
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	vitamin K metabolism	40	2 of 5
[Ref.: #66794]	degradation of hexoses	38.89	7 of 18
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	38.46	5 of 13
[Ref.: #66794]	degradation of pentoses	35.71	10 of 28
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	ginsenoside metabolism	31.25	5 of 16
[Ref.: #66794]	4-hydroxyphenylacetate degradation	30	3 of 10
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	methanogenesis from CO2	25	3 of 12
[Ref.: #66794]	degradation of sugar acids	24	6 of 25
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5425]	Sample type/isolated from	soil with decaying plant material
[Ref.: #5425]	Geographic location (country and/or sea, region)	Bavaria
[Ref.: #5425]	Country	Germany
[Ref.: #5425]	Country ISO 3 Code	DEU
[Ref.: #5425]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Decomposing plant

What are isolation sources categories?

Global distribution of 16S sequence AJ233945 (>99% sequence identity) for Nannocystis from Microbeatlas

Aquatic Samples	7
Soil Samples	51
Animal Samples	9
Plant Samples	10
Total Samples	77

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5425]	Nannocystis aggregans 16S rRNA gene, strain Na a1	AJ233945	1514	ENA	83457 tax ID

Availability in culture collections External links

Culture collection no.

References

#5425

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14639

#18281

Reichenbach, H.: Collection description and documentation of myxobacteria by H. Reichenbach, HZI (formerly GBF); Collection curr. located at the DSMZ . Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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