Strain identifier
BacDive ID: 976
Type strain: 
Species: Bacillus subtilis
Strain history: <- NRRL; NRS 230 <- C. Thom, USDA, 1912, (Bacillus subtilis var. aterrimus)
NCBI tax ID(s): 1423 (species)
version 9.3 (current version)
General
@ref: 2258
BacDive-ID: 976
DSM-Number: 5611
keywords: genome sequence, Bacteria, spore-forming, mesophilic
description: Bacillus subtilis DSM 5611 is a spore-forming, mesophilic bacterium that was isolated from cornstarch.
NCBI tax id
- NCBI tax id: 1423
- Matching level: species
strain history
- @ref: 2258
- history: <- NRRL; NRS 230 <- C. Thom, USDA, 1912, (Bacillus subtilis var. aterrimus)
doi: 10.13145/bacdive976.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus subtilis
- full scientific name: Bacillus subtilis (Ehrenberg 1835) Cohn 1872 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Vibrio subtilis
@ref: 2258
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus subtilis
full scientific name: Bacillus subtilis (Ehrenberg 1835) Cohn 1872
type strain: no
Culture and growth conditions
culture medium
- @ref: 2258
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 2258
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
spore formation
- @ref: 125438
- spore formation: yes
- confidence: 94.564
Isolation, sampling and environmental information
isolation
- @ref: 2258
- sample type: cornstarch
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
Safety information
risk assessment
- @ref: 2258
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Bacillus subtilis DSM 5611
- accession: GCA_029536975
- assembly level: complete
- database: ncbi
- NCBI tax ID: 1423
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 81.125 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 89.462 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 72.332 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 94.564 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 95.139 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 88.902 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 69.7 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 68.2 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | variable | 76.2 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | facultative anaerobe | 61.6 |
External links
@ref: 2258
culture collection no.: DSM 5611, NRRL B-360, NRS 230
straininfo link
- @ref: 70649
- straininfo: 47955
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 2258 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5611) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-5611 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 70649 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47955.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |