Workshop and Q&A October 6th

Strain identifier

BacDive ID: 95

Type strain: Yes

Species: Komagataeibacter sucrofermentans

Strain history: T. Tsuchida BPR2001.

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6212

BacDive-ID: 95

DSM-Number: 15973

keywords: polysaccharide production, mesophilic, Bacteria, 16S sequence, genome sequence

description: Komagataeibacter sucrofermentans DSM 15973 is a mesophilic bacterium that produces polysaccharides and was isolated from black cherry.

NCBI tax id

NCBI tax idMatching level
1053551species
1307942strain

strain history

doi: 10.13145/bacdive95.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Komagataeibacter
  • species: Komagataeibacter sucrofermentans
  • full scientific name: Komagataeibacter sucrofermentans (Toyosaki et al. 1996) Yamada et al. 2013
  • synonyms

    @refsynonym
    20215Gluconacetobacter sucrofermentans
    20215Komagatabacter sucrofermentans
    20215Acetobacter xylinum subsp. sucrofermentans
    20215Acetobacter xylinus subsp. sucrofermentans
    20215Gluconacetobacter xylinus subsp. sucrofermentans

@ref: 6212

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Komagataeibacter

species: Komagataeibacter sucrofermentans

full scientific name: Komagataeibacter sucrofermentans (Toyosaki et al. 1996) Yamada et al. 2013

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6212GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105)yeshttps://bacmedia.dsmz.de/medium/105Name: GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105; with strain-specific modifications) Composition: Glucose 100.0 g/l CaCO3 30.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Distilled water
39824MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffiiyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (5.000 g);Peptone (3.000 g);Mannitol (25.000 g)

culture temp

@refgrowthtypetemperaturerange
6212positivegrowth28mesophilic
39824positivegrowth30mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

  • @ref: 6212
  • compound: cellulose

observation

  • @ref: 67770
  • observation: quinones: Q-10

metabolite production

  • @ref: 67770
  • Chebi-ID: 62968
  • metabolite: cellulose
  • production: yes

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6212black cherryTokyoJapanJPNAsia
67770Cherry

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Tree
#Climate#Temperate

Safety information

risk assessment

  • @ref: 6212
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Gluconacetobacter sucrofermentans gene for 16S rRNA, partial sequence, strain: JCM 9730AB2052171445ena1307942
20218Gluconacetobacter sucrofermentans gene for 16S rRNA, partial sequence, strain: JCM 9730AB5987421411ena1307942
20218Gluconacetobacter sucrofermentans gene for 16S rRNA, partial sequence, strain: JCM 9730AB6457351411ena1307942
6212Gluconacetobacter sucrofermentans partial 16S rRNA gene, type strain BPR 2001TAJ0076981463ena1307942

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Komagataeibacter sucrofermentans LMG 18788GCA_003207865contigncbi1053551
66792Komagataeibacter sucrofermentans strain LMG 187881053551.5wgspatric1053551
66792Komagataeibacter sucrofermentans LMG 187882846444558draftimg1053551
67770Komagataeibacter sucrofermentans strain LMG 18788, whole genome shotgun sequencing projectNKUA00000000ncbi1053551

GC content

@refGC-contentmethod
621262.7high performance liquid chromatography (HPLC)
6777062.3high performance liquid chromatography (HPLC)
6777062.4high performance liquid chromatography (HPLC)

External links

@ref: 6212

culture collection no.: DSM 15973, BCC 7227, JCM 9730, LMG 18788, BPR 2001, ATCC 700178, BCRC 80162, CECT 7291, CIP 106078

straininfo link

@refpassport
20218http://www.straininfo.net/strains/692143
20218http://www.straininfo.net/strains/505063
20218http://www.straininfo.net/strains/47090
20218http://www.straininfo.net/strains/47087

literature

  • topic: Phylogeny
  • Pubmed-ID: 19915110
  • title: Phylogeny and differentiation of species of the genus Gluconacetobacter and related taxa based on multilocus sequence analyses of housekeeping genes and reclassification of Acetobacter xylinus subsp. sucrofermentans as Gluconacetobacter sucrofermentans (Toyosaki et al. 1996) sp. nov., comb. nov.
  • authors: Cleenwerck I, De Vos P, De Vuyst L
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.018465-0
  • year: 2009
  • mesh: Amplified Fragment Length Polymorphism Analysis, Bacterial Proteins/genetics, Bacterial Typing Techniques, Chaperonin 60/genetics, Cluster Analysis, DNA Fingerprinting, DNA, Bacterial/chemistry/genetics, DNA-Directed RNA Polymerases/genetics, Gluconacetobacter/*classification/*genetics, Gluconacetobacter xylinus/*classification/*genetics, Molecular Chaperones/genetics, Molecular Sequence Data, Multilocus Sequence Typing, Phylogeny, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6212Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15973)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15973
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39824Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18168
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/