Strain identifier

BacDive ID: 9

Type strain: Yes

Species: Acetobacter lovaniensis

Strain history: DSM 4491 <-- NCIMB 8620 <-- W. Verhoeven L 1024 <-- J. Frateur.

NCBI tax ID(s): 104100 (species)

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General

@ref: 1703

BacDive-ID: 9

DSM-Number: 4491

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative

description: Acetobacter lovaniensis DSM 4491 is a mesophilic, Gram-negative bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 104100
  • Matching level: species

strain history

@refhistory
1703<- NCIMB <- W. Verhoeven <- J. Frateur
67770DSM 4491 <-- NCIMB 8620 <-- W. Verhoeven L 1024 <-- J. Frateur.

doi: 10.13145/bacdive9.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Acetobacter
  • species: Acetobacter lovaniensis
  • full scientific name: Acetobacter lovaniensis (Frateur 1950) Lisdiyanti et al. 2001

  • synonyms

    @refsynonym
    20215Acetobacter pasteurianus subsp. lovaniensis
    20215Acetobacter lovaniense

@ref: 1703

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Acetobacter

species: Acetobacter lovaniensis

full scientific name: Acetobacter lovaniensis (Frateur 1950) Lisdiyanti et al. 2001

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.995

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1703YPM MEDIUM (DSMZ Medium 360)yeshttps://mediadive.dsmz.de/medium/360Name: YPM MEDIUM (DSMZ Medium 360) Composition: Mannitol 25.0 g/l Agar 12.0 g/l Yeast extract 5.0 g/l Peptone 3.0 g/l Distilled water
1703GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105)yeshttps://mediadive.dsmz.de/medium/105Name: GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105) Composition: Glucose 100.0 g/l CaCO3 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
1703positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.995

observation

  • @ref: 67770
  • observation: quinones: Q-9

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
1703soilBequevoordBelgiumBELEurope
67770Sewage on soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 1703
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Acetobacter pasteurianus 16S rRNA gene, strain CCM 3606FM1788691511ena438
20218Acetobacter lovaniensis gene for 16S rRNA, partial sequence, strain: JCM 17121AB6650791412ena104100
20218Acetobacter lovaniensis 16S rRNA gene, strain LMG 1617AJ4198371442ena104100
20218Acetobacter lovaniensis gene for 16S rRNA, partial sequence, strain: NBRC 13753AB6805071415ena104100
1703Acetobacter lovaniensis gene for 16S rRNA, partial sequenceAB0323511443ena104100

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acetobacter lovaniensis DSM 4491GCA_014207635scaffoldncbi104100
66792Acetobacter lovaniensis strain DSM 4491104100.6wgspatric104100
66792Acetobacter lovaniensis strain LMG 1617104100.5wgspatric104100
66792Acetobacter lovaniensis DSM 44912861688124draftimg104100
67770Acetobacter lovaniensis LMG 1617GCA_011516875contigncbi104100

GC content

  • @ref: 67770
  • GC-content: 58.6
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno76.31no
gram-positiveno97.364no
anaerobicno98.876no
aerobicyes88.99no
halophileno86.916no
spore-formingno94.011no
glucose-utilyes78.389no
thermophileno96.699yes
motileyes73.853no
glucose-fermentno91.337no

External links

@ref: 1703

culture collection no.: DSM 4491, ATCC 12875, CCUG 18127, IMET 10734, JCM 17121, LMD 31.2, LMG 1579, LMG 1617, NCIMB 8620, CCM 3606, ICMP 8610, IFO 13753, NBRC 13753, NCCB 31002

straininfo link

  • @ref: 69693
  • straininfo: 92678

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1703Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4491)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4491
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
69693Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92678.1StrainInfo: A central database for resolving microbial strain identifiers