Strain identifier
BacDive ID: 899
Type strain:
Species: Bacillus sp.
Strain Designation: Pac 2
Strain history: CIP <- 1992, F. Pichinoty, CNRS, Marseille, France: strain Pac 2
NCBI tax ID(s): 1409 (species)
General
@ref: 3101
BacDive-ID: 899
DSM-Number: 7297
keywords: Bacteria, obligate aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped
description: Bacillus sp. Pac 2 is an obligate aerobe, spore-forming, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1409
- Matching level: species
strain history
@ref | history |
---|---|
3101 | <- F. Pichinoty |
35562 | 1992, F. Pichinoty, CNRS, Marseille, France: strain Pac 2 |
116023 | CIP <- 1992, F. Pichinoty, CNRS, Marseille, France: strain Pac 2 |
doi: 10.13145/bacdive899.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus sp.
- full scientific name: Bacillus Cohn 1872 (Approved Lists 1980)
synonyms
@ref synonym 20215 Quasibacillus 20215 Pseudobacillus 20215 Maribacillus
@ref: 3101
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus sp.
full scientific name: Bacillus sp.
strain designation: Pac 2
type strain: no
Morphology
cell morphology
- @ref: 116023
- gram stain: positive
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
3101 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
35562 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
116023 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
3101 | positive | growth | 30 | mesophilic |
35562 | positive | growth | 30 | mesophilic |
116023 | positive | growth | 30-45 | |
116023 | no | growth | 10 | psychrophilic |
116023 | no | growth | 55 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 116023
- oxygen tolerance: obligate aerobe
spore formation
- @ref: 116023
- spore formation: yes
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
116023 | NaCl | positive | growth | 0-2 % |
116023 | NaCl | no | growth | 4 % |
116023 | NaCl | no | growth | 6 % |
116023 | NaCl | no | growth | 8 % |
116023 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
116023 | 17632 | nitrate | + | reduction |
116023 | 16301 | nitrite | - | reduction |
116023 | 17632 | nitrate | + | respiration |
metabolite production
- @ref: 116023
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 116023
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: +
enzymes
@ref | value | activity | ec |
---|---|---|---|
116023 | oxidase | - | |
116023 | alcohol dehydrogenase | - | 1.1.1.1 |
116023 | gelatinase | - | |
116023 | amylase | - | |
116023 | caseinase | - | 3.4.21.50 |
116023 | catalase | + | 1.11.1.6 |
116023 | lecithinase | + | |
116023 | lysine decarboxylase | - | 4.1.1.18 |
116023 | ornithine decarboxylase | - | 4.1.1.17 |
116023 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | isolation date |
---|---|---|---|---|---|---|
3101 | soil | Marseille | France | FRA | Europe | |
116023 | Environment, Soil | Marseille | France | FRA | Europe | 1980 |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 116023
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
GC content
- @ref: 3101
- GC-content: 46.4
- method: Buoyant density centrifugation (BD)
External links
@ref: 3101
culture collection no.: DSM 7297, CIP 103557, ATCC 51157
straininfo link
- @ref: 70572
- straininfo: 42834
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
3101 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7297) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-7297 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
35562 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/15368 | ||
70572 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID42834.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
116023 | Curators of the CIP | Collection of Institut Pasteur (CIP 103557) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103557 |