Strain identifier
BacDive ID: 8629
Type strain:
Species: Metamycoplasma neophronis
Strain Designation: G.A.
Strain history: <- A. Suárez-Pérez, Universidad de Las Palmas de Gran Canaria, Unidad de Epidemiologia y Medicina Preventiva, Spain; G.A. <- A.S. Ramírez
NCBI tax ID(s): 872983 (species)
General
@ref: 17490
BacDive-ID: 8629
DSM-Number: 24097
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, animal pathogen
description: Metamycoplasma neophronis G.A. is a mesophilic, Gram-negative animal pathogen that was isolated from upper respiratory tract of Egyptian vulture Neophron Percnopterus majorensis.
NCBI tax id
- NCBI tax id: 872983
- Matching level: species
strain history
- @ref: 17490
- history: <- A. Suárez-Pérez, Universidad de Las Palmas de Gran Canaria, Unidad de Epidemiologia y Medicina Preventiva, Spain; G.A. <- A.S. Ramírez
doi: 10.13145/bacdive8629.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/mycoplasmatota
- domain: Bacteria
- phylum: Mycoplasmatota
- class: Mollicutes
- order: Mycoplasmoidales
- family: Metamycoplasmataceae
- genus: Metamycoplasma
- species: Metamycoplasma neophronis
- full scientific name: Metamycoplasma neophronis (Suárez-Pérez et al. 2012) Gupta et al. 2018
synonyms
- @ref: 20215
- synonym: Mycoplasma neophronis
@ref: 17490
domain: Bacteria
phylum: Tenericutes
class: Mollicutes
order: Mycoplasmatales
family: Metamycoplasmataceae
genus: Metamycoplasma
species: Metamycoplasma neophronis
full scientific name: Metamycoplasma neophronis (Suárez-Pérez et al. 2012) Gupta et al. 2018
strain designation: G.A.
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.806
colony morphology
- @ref: 17490
- incubation period: 2-3 days
Culture and growth conditions
culture medium
- @ref: 17490
- name: SP4-Z MEDIUM (DSMZ Medium 1076b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1076b
- composition: Name: SP4-Z MEDIUM (DSMZ Medium 1076b) Composition: Agar 10.0 g/l Tryptone 10.0 g/l Bacto peptone 5.0 g/l PPLO broth 3.5 g/l Urea 2.0 g/l Glucose 1.0 g/l None 1.0 g/l Yeast extract 0.4 g/l DNA 0.2 g/l CMRL 1066 Fetal bovine serum Swine serum Distilled water
culture temp
- @ref: 17490
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.998 |
metabolite utilization
- @ref: 30342
- Chebi-ID: 29016
- metabolite: arginine
- utilization activity: +
- kind of utilization tested: carbon source
Isolation, sampling and environmental information
isolation
- @ref: 17490
- sample type: upper respiratory tract of Egyptian vulture Neophron Percnopterus majorensis
- host species: Neophron Percnopterus majorensis
- geographic location: Canary Islands, Gran Canaria
- country: Spain
- origin.country: ESP
- continent: Europe
isolation source categories
Cat1 | Cat2 |
---|---|
#Host | #Birds |
#Host Body-Site | #Oral cavity and airways |
Safety information
risk assessment
- @ref: 17490
- pathogenicity animal: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17490
- description: Mycoplasma neophronis partial 16S rRNA gene, type strain G.A.T
- accession: FR682077
- length: 1517
- database: ena
- NCBI tax ID: 872983
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Metamycoplasma neophronis DSM 24097 | GCA_006491995 | contig | ncbi | 872983 |
66792 | Mycoplasma neophronis strain DSM 24097 | 872983.3 | wgs | patric | 872983 |
GC content
@ref | GC-content | method |
---|---|---|
17490 | 31 | high performance liquid chromatography (HPLC) |
30342 | 31 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 94.5 | no |
flagellated | no | 97.384 | no |
gram-positive | no | 50 | no |
anaerobic | no | 93.679 | no |
halophile | no | 52.641 | no |
spore-forming | no | 98.058 | no |
thermophile | no | 97.497 | yes |
glucose-util | yes | 84.136 | no |
aerobic | no | 94.853 | no |
glucose-ferment | yes | 72.402 | no |
External links
@ref: 17490
culture collection no.: DSM 24097, ATCC BAA 2157
straininfo link
- @ref: 78010
- straininfo: 408285
literature
- topic: Phylogeny
- Pubmed-ID: 21828019
- title: Mycoplasma neophronis sp. nov., isolated from the upper respiratory tract of Canarian Egyptian vultures (Neophron percnopterus majorensis).
- authors: Suarez-Perez A, Ramirez AS, Rosales RS, Calabuig P, Poveda C, Rossello-Mora R, Nicholas RAJ, Poveda JB
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.033803-0
- year: 2011
- mesh: Animals, DNA, Bacterial/genetics, Falconiformes/*microbiology, Larynx/*microbiology, Molecular Sequence Data, Mycoplasma/*classification/genetics/*isolation & purification, Phylogeny, RNA, Ribosomal, 16S/genetics
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
---|---|---|---|---|---|---|---|
17490 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24097) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24097 | ||||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
30342 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26683 | 28776041 | ||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | ||||
78010 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID408285.1 | StrainInfo: A central database for resolving microbial strain identifiers |