Strain identifier

BacDive ID: 8629

Type strain: Yes

Species: Metamycoplasma neophronis

Strain Designation: G.A.

Strain history: <- A. Suárez-Pérez, Universidad de Las Palmas de Gran Canaria, Unidad de Epidemiologia y Medicina Preventiva, Spain; G.A. <- A.S. Ramírez

NCBI tax ID(s): 872983 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 17490

BacDive-ID: 8629

DSM-Number: 24097

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, animal pathogen

description: Metamycoplasma neophronis G.A. is a mesophilic, Gram-negative animal pathogen that was isolated from upper respiratory tract of Egyptian vulture Neophron Percnopterus majorensis.

NCBI tax id

  • NCBI tax id: 872983
  • Matching level: species

strain history

  • @ref: 17490
  • history: <- A. Suárez-Pérez, Universidad de Las Palmas de Gran Canaria, Unidad de Epidemiologia y Medicina Preventiva, Spain; G.A. <- A.S. Ramírez

doi: 10.13145/bacdive8629.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/mycoplasmatota
  • domain: Bacteria
  • phylum: Mycoplasmatota
  • class: Mollicutes
  • order: Mycoplasmoidales
  • family: Metamycoplasmataceae
  • genus: Metamycoplasma
  • species: Metamycoplasma neophronis
  • full scientific name: Metamycoplasma neophronis (Suárez-Pérez et al. 2012) Gupta et al. 2018
  • synonyms

    • @ref: 20215
    • synonym: Mycoplasma neophronis

@ref: 17490

domain: Bacteria

phylum: Tenericutes

class: Mollicutes

order: Mycoplasmatales

family: Metamycoplasmataceae

genus: Metamycoplasma

species: Metamycoplasma neophronis

full scientific name: Metamycoplasma neophronis (Suárez-Pérez et al. 2012) Gupta et al. 2018

strain designation: G.A.

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.806

colony morphology

  • @ref: 17490
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

  • @ref: 17490
  • name: SP4-Z MEDIUM (DSMZ Medium 1076b)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1076b
  • composition: Name: SP4-Z MEDIUM (DSMZ Medium 1076b) Composition: Agar 10.0 g/l Tryptone 10.0 g/l Bacto peptone 5.0 g/l PPLO broth 3.5 g/l Urea 2.0 g/l Glucose 1.0 g/l None 1.0 g/l Yeast extract 0.4 g/l DNA 0.2 g/l CMRL 1066 Fetal bovine serum Swine serum Distilled water

culture temp

  • @ref: 17490
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.998

metabolite utilization

  • @ref: 30342
  • Chebi-ID: 29016
  • metabolite: arginine
  • utilization activity: +
  • kind of utilization tested: carbon source

Isolation, sampling and environmental information

isolation

  • @ref: 17490
  • sample type: upper respiratory tract of Egyptian vulture Neophron Percnopterus majorensis
  • host species: Neophron Percnopterus majorensis
  • geographic location: Canary Islands, Gran Canaria
  • country: Spain
  • origin.country: ESP
  • continent: Europe

isolation source categories

Cat1Cat2
#Host#Birds
#Host Body-Site#Oral cavity and airways

Safety information

risk assessment

  • @ref: 17490
  • pathogenicity animal: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17490
  • description: Mycoplasma neophronis partial 16S rRNA gene, type strain G.A.T
  • accession: FR682077
  • length: 1517
  • database: ena
  • NCBI tax ID: 872983

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Metamycoplasma neophronis DSM 24097GCA_006491995contigncbi872983
66792Mycoplasma neophronis strain DSM 24097872983.3wgspatric872983

GC content

@refGC-contentmethod
1749031high performance liquid chromatography (HPLC)
3034231

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno94.5no
flagellatedno97.384no
gram-positiveno50no
anaerobicno93.679no
halophileno52.641no
spore-formingno98.058no
thermophileno97.497yes
glucose-utilyes84.136no
aerobicno94.853no
glucose-fermentyes72.402no

External links

@ref: 17490

culture collection no.: DSM 24097, ATCC BAA 2157

straininfo link

  • @ref: 78010
  • straininfo: 408285

literature

  • topic: Phylogeny
  • Pubmed-ID: 21828019
  • title: Mycoplasma neophronis sp. nov., isolated from the upper respiratory tract of Canarian Egyptian vultures (Neophron percnopterus majorensis).
  • authors: Suarez-Perez A, Ramirez AS, Rosales RS, Calabuig P, Poveda C, Rossello-Mora R, Nicholas RAJ, Poveda JB
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.033803-0
  • year: 2011
  • mesh: Animals, DNA, Bacterial/genetics, Falconiformes/*microbiology, Larynx/*microbiology, Molecular Sequence Data, Mycoplasma/*classification/genetics/*isolation & purification, Phylogeny, RNA, Ribosomal, 16S/genetics
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
17490Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24097)https://www.dsmz.de/collection/catalogue/details/culture/DSM-24097
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30342Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2668328776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
78010Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID408285.1StrainInfo: A central database for resolving microbial strain identifiers