Strain identifier
BacDive ID: 8627
Type strain:
Species: Mycoplasma leachii
Strain Designation: N29, PG50
Strain history: <- NCTC {2008} <- PHLS <- R. H. Leach <- G. S. Cottew <- G.C. Simmons and L.A.Y. Johnston
NCBI tax ID(s): 2105 (species)
General
@ref: 15475
BacDive-ID: 8627
DSM-Number: 21131
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, animal pathogen
description: Mycoplasma leachii N29 is an aerobe, mesophilic animal pathogen that was isolated from calf, arthritic joint.
NCBI tax id
- NCBI tax id: 2105
- Matching level: species
strain history
- @ref: 15475
- history: <- NCTC {2008} <- PHLS <- R. H. Leach <- G. S. Cottew <- G.C. Simmons and L.A.Y. Johnston
doi: 10.13145/bacdive8627.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/mycoplasmatota
- domain: Bacteria
- phylum: Mycoplasmatota
- class: Mollicutes
- order: Mycoplasmatales
- family: Mycoplasmataceae
- genus: Mycoplasma
- species: Mycoplasma leachii
- full scientific name: Mycoplasma leachii Manso-Silván et al. 2009
@ref: 15475
domain: Bacteria
phylum: Tenericutes
class: Mollicutes
order: Mycoplasmatales
family: Mycoplasmataceae
genus: Mycoplasma
species: Mycoplasma leachii
full scientific name: Mycoplasma leachii Manso-Silván et al. 2009
strain designation: N29, PG50
type strain: yes
Morphology
cell morphology
- @ref: 29074
- motility: no
pigmentation
- @ref: 29074
- production: no
Culture and growth conditions
culture medium
- @ref: 15475
- name: SP4-Z MEDIUM (DSMZ Medium 1076b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1076b
- composition: Name: SP4-Z MEDIUM (DSMZ Medium 1076b) Composition: Agar 10.0 g/l Tryptone 10.0 g/l Bacto peptone 5.0 g/l PPLO broth 3.5 g/l Urea 2.0 g/l Glucose 1.0 g/l None 1.0 g/l Yeast extract 0.4 g/l DNA 0.2 g/l CMRL 1066 Fetal bovine serum Swine serum Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
15475 | positive | growth | 37 | mesophilic |
29074 | positive | growth | 28-37 | mesophilic |
29074 | positive | optimum | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
15475 | aerobe |
29074 | facultative anaerobe |
metabolite utilization
- @ref: 29074
- Chebi-ID: 17234
- metabolite: glucose
- utilization activity: +
- kind of utilization tested: carbon source
Isolation, sampling and environmental information
isolation
- @ref: 15475
- sample type: calf, arthritic joint
- country: Australia
- origin.country: AUS
- continent: Australia and Oceania
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Inflammation | |
#Host | #Mammals | #Bovinae (Cow, Cattle) |
#Host Body-Site | #Limb | #Joint |
taxonmaps
- @ref: 69479
- File name: preview.99_653.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_109;96_405;97_458;98_527;99_653&stattab=map
- Last taxonomy: Mycoplasma
- 16S sequence: U26054
- Sequence Identity:
- Total samples: 4646
- soil counts: 14
- aquatic counts: 107
- animal counts: 4511
- plant counts: 14
Safety information
risk assessment
- @ref: 15475
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 15475
- description: Mycoplasma sp. PG50 (bovine group 7) 16S ribosomal RNA (rrnB) gene
- accession: U26054
- length: 1524
- database: ena
- NCBI tax ID: 880447
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Mycoplasma leachii PG50 | GCA_000183365 | complete | ncbi | 880447 |
66792 | Mycoplasma leachii PG50 | 880447.3 | complete | patric | 880447 |
66792 | Mycoplasma leachii PG50 | 649633074 | complete | img | 880447 |
GC content
- @ref: 29074
- GC-content: 25.4
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 93.445 | yes |
flagellated | no | 97.96 | yes |
gram-positive | yes | 72.619 | no |
anaerobic | no | 96.263 | yes |
aerobic | no | 96.239 | no |
halophile | no | 50 | no |
spore-forming | no | 98.437 | no |
thermophile | no | 95.048 | yes |
glucose-util | yes | 91.964 | yes |
glucose-ferment | yes | 82.475 | no |
External links
@ref: 15475
culture collection no.: DSM 21131, NCTC 10133
straininfo link
- @ref: 78008
- straininfo: 114266
literature
- topic: Phylogeny
- Pubmed-ID: 19502315
- title: Mycoplasma leachii sp. nov. as a new species designation for Mycoplasma sp. bovine group 7 of Leach, and reclassification of Mycoplasma mycoides subsp. mycoides LC as a serovar of Mycoplasma mycoides subsp. capri.
- authors: Manso-Silvan L, Vilei EM, Sachse K, Djordjevic SP, Thiaucourt F, Frey J
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.005546-0
- year: 2009
- mesh: Animals, Arthritis, Infectious/microbiology/*veterinary, Australia, Cattle, Cattle Diseases/*microbiology, Genotype, Goat Diseases/*microbiology, Goats, Mycoplasma/*classification/genetics/pathogenicity, Mycoplasma Infections/microbiology/veterinary, Mycoplasma mycoides/*classification/genetics/pathogenicity, Phylogeny, Pleuropneumonia, Contagious/*microbiology, Serotyping, Species Specificity, Turkey
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
15475 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21131) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21131 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
29074 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25504 | 28776041 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
78008 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID114266.1 | StrainInfo: A central database for resolving microbial strain identifiers |