Strain identifier

BacDive ID: 8624

Type strain: Yes

Species: Mycoplasmopsis sturni

Strain Designation: UCMF

Strain history: CIP <- 1998, J.G. Tully, Univ. Connecticut, USA: strain UCMF <- S.J. Geary <- L. Hinckley

NCBI tax ID(s): 1122249 (strain), 39047 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 16108

BacDive-ID: 8624

DSM-Number: 22021

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, animal pathogen

description: Mycoplasmopsis sturni UCMF is an aerobe, mesophilic, Gram-negative animal pathogen that was isolated from Conjunctiva of European starling Sturnus vulgaris.

NCBI tax id

NCBI tax idMatching level
39047species
1122249strain

strain history

@refhistory
16108<- CIP <- J. G. Tully, Frederick Cancer Res. and Development Center, Natl. Inst. of Allergy and Infectious Diseases, Frederick, USA; UCMF <- S. J. Geary, Univ. Connecticut, Storrs CT, USA <- L. Hinckley
123330CIP <- 1998, J.G. Tully, Univ. Connecticut, USA: strain UCMF <- S.J. Geary <- L. Hinckley

doi: 10.13145/bacdive8624.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/mycoplasmatota
  • domain: Bacteria
  • phylum: Mycoplasmatota
  • class: Mollicutes
  • order: Mycoplasmoidales
  • family: Metamycoplasmataceae
  • genus: Mycoplasmopsis
  • species: Mycoplasmopsis sturni
  • full scientific name: Mycoplasmopsis sturni (Forsyth et al. 1996) Gupta et al. 2018

  • synonyms

    • @ref: 20215
    • synonym: Mycoplasma sturni

@ref: 16108

domain: Bacteria

phylum: Tenericutes

class: Mollicutes

order: Mycoplasmatales

family: Metamycoplasmataceae

genus: Mycoplasmopsis

species: Mycoplasmopsis sturni

full scientific name: Mycoplasmopsis sturni (Forsyth et al. 1996) Gupta et al. 2018

strain designation: UCMF

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 98.479

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16108SP4-Z MEDIUM (DSMZ Medium 1076b)yeshttps://mediadive.dsmz.de/medium/1076bName: SP4-Z MEDIUM (DSMZ Medium 1076b) Composition: Agar 10.0 g/l Tryptone 10.0 g/l Bacto peptone 5.0 g/l PPLO broth 3.5 g/l Urea 2.0 g/l Glucose 1.0 g/l None 1.0 g/l Yeast extract 0.4 g/l DNA 0.2 g/l CMRL 1066 Fetal bovine serum Swine serum Distilled water
32853MEDIUM 79 - for MycoplasmayesDistilled water make up to (610.000 ml);Glucose (5.000 g);Peptone (5.300g);Tryptone (10.000 g);PPLO broth (0.500 g);Sterile supplement - M00265 (375.000 ml)
123330CIP Medium 79yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=79

culture temp

@refgrowthtypetemperaturerange
16108positivegrowth37mesophilic
32853positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 16108
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.998

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentisolation date
16108Conjunctiva of European starling Sturnus vulgarisSturnus vulgarisConnecticutUSAUSANorth America
123330Conjunctiva of European starling, Sturnus vulgarisConnecticutUnited States of AmericaUSANorth America1995

isolation source categories

Cat1Cat2Cat3
#Host#Birds
#Host Body-Site#Organ#Eye

taxonmaps

  • @ref: 69479
  • File name: preview.99_5396.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_157;96_2615;97_3203;98_4023;99_5396&stattab=map
  • Last taxonomy: Mycoplasma sturni subclade
  • 16S sequence: U22013
  • Sequence Identity:
  • Total samples: 61
  • soil counts: 2
  • aquatic counts: 2
  • animal counts: 57

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
16108yes2Risk group (German classification)
1233301Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Mycoplasma sturni ATCC 51945 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceAY766090905ena39047
16108Mycoplasma sturnidae 16S rRNA gene, partial sequenceU220131426ena39047

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycoplasmopsis sturni DSM 22021GCA_000701485scaffoldncbi1122249
66792Mycoplasma sturni DSM 220211122249.3wgspatric1122249
66792Mycoplasma sturni DSM 220211122249.5wgspatric1122249
66792Mycoplasma sturni DSM 220212561511123draftimg1122249

GC content

  • @ref: 16108
  • GC-content: 31.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno93.212no
flagellatedno97.522no
gram-positiveyes59.487no
anaerobicno95.759yes
halophileyes56.894no
spore-formingno98.522no
thermophileno98.829yes
glucose-utilyes87.706no
aerobicno93.965yes
glucose-fermentyes75.738no

External links

@ref: 16108

culture collection no.: DSM 22021, ATCC 51945, CIP 105812

straininfo link

  • @ref: 78005
  • straininfo: 45328

literature

  • topic: Phylogeny
  • Pubmed-ID: 8782681
  • title: Mycoplasma sturni sp. nov., from the conjunctiva of a European starling (Sturnus vulgaris).
  • authors: Forsyth MH, Tully JG, Gorton TS, Hinckley L, Frasca S Jr, van Kruiningen HJ, Geary SJ
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-46-3-716
  • year: 1996
  • mesh: Animals, Base Sequence, Bird Diseases/*microbiology, Birds, Cholesterol/metabolism, Conjunctiva/*microbiology, Conjunctivitis, Bacterial/microbiology/*veterinary, DNA, Bacterial, Molecular Sequence Data, Mycoplasma/*classification/isolation & purification/physiology/ultrastructure, Mycoplasma Infections/microbiology/*veterinary
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16108Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22021)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22021
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
32853Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17873
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
78005Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID45328.1StrainInfo: A central database for resolving microbial strain identifiers
123330Curators of the CIPCollection of Institut Pasteur (CIP 105812)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105812