Strain identifier
BacDive ID: 8621
Type strain: 
Species: Mycoplasma cottewii
Strain Designation: VIS
Strain history: CIP <- 1998, G. Bölske, Nat. Vet. Inst., Uppsala, Sweden <- J.G. Tully: strain VIS
NCBI tax ID(s): 51364 (species)
version 8.1 (current version)
General
@ref: 16107
BacDive-ID: 8621
DSM-Number: 22020
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Mycoplasma cottewii VIS is a mesophilic bacterium that was isolated from goat, external ear canal.
NCBI tax id
- NCBI tax id: 51364
- Matching level: species
strain history
| @ref | history |
|---|---|
| 16107 | <- CIP; VIS {2008} <- G. Bölske <- J. G. Tully |
| 118768 | CIP <- 1998, G. Bölske, Nat. Vet. Inst., Uppsala, Sweden <- J.G. Tully: strain VIS |
doi: 10.13145/bacdive8621.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/mycoplasmatota
- domain: Bacteria
- phylum: Mycoplasmatota
- class: Mollicutes
- order: Mycoplasmatales
- family: Mycoplasmataceae
- genus: Mycoplasma
- species: Mycoplasma cottewii
- full scientific name: Mycoplasma cottewii Da Massa et al. 1994
@ref: 16107
domain: Bacteria
phylum: Tenericutes
class: Mollicutes
order: Mycoplasmatales
family: Mycoplasmataceae
genus: Mycoplasma
species: Mycoplasma cottewii
full scientific name: Mycoplasma cottewii Da Massa et al. 1994
strain designation: VIS
type strain: yes
Morphology
colony morphology
- @ref: 16107
- incubation period: 1-2 days
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 16107 | SP4-Z MEDIUM (DSMZ Medium 1076b) | yes | https://mediadive.dsmz.de/medium/1076b | Name: SP4-Z MEDIUM (DSMZ Medium 1076b) Composition: Agar 10.0 g/l Tryptone 10.0 g/l Bacto peptone 5.0 g/l PPLO broth 3.5 g/l Urea 2.0 g/l Glucose 1.0 g/l None 1.0 g/l Yeast extract 0.4 g/l DNA 0.2 g/l CMRL 1066 Fetal bovine serum Swine serum Distilled water |
| 37217 | MEDIUM 88 - for Mycoplasma and Acholeplasma | yes | Distilled water make up to (670.000 ml);PPLO broth (17.000 g);Sterile supplement - M00273 (210.000 ml);Yeast extract solution 25 % - M00263 (100.000 ml);0.1 % Phenol red - M00387 (20.000 ml) | |
| 118768 | CIP Medium 88 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=88 |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16107 | positive | growth | 37 | mesophilic |
| 37217 | positive | growth | 37 | mesophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 16107 | goat, external ear canal | Australia | AUS | Australia and Oceania |
| 118768 | Goat, external ear canal | Australia | AUS | Australia and Oceania |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Caprinae (Sheep/Goat) |
| #Host Body-Site | #Organ | #Ear |
taxonmaps
- @ref: 69479
- File name: preview.99_1308.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_109;96_405;97_458;98_1034;99_1308&stattab=map
- Last taxonomy: Mycoplasma
- 16S sequence: U67945
- Sequence Identity:
- Total samples: 794
- soil counts: 16
- aquatic counts: 46
- animal counts: 731
- plant counts: 1
Safety information
risk assessment
| @ref | biosafety level | biosafety level comment |
|---|---|---|
| 16107 | 1 | Risk group (German classification) |
| 118768 | 2 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 16107
- description: Mycoplasma cottewii strain VIS 16S ribosomal RNA (rrn) gene, partial sequence
- accession: U67945
- length: 1467
- database: ena
- NCBI tax ID: 51364
Genome sequences
- @ref: 66792
- description: Mycoplasma cottewii VIS
- accession: GCA_024918975
- assembly level: complete
- database: ncbi
- NCBI tax ID: 51364
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 93.881 | no |
| flagellated | no | 97.682 | no |
| gram-positive | yes | 70.18 | no |
| anaerobic | no | 96.562 | no |
| aerobic | no | 96.5 | no |
| halophile | yes | 51.222 | no |
| spore-forming | no | 98.494 | no |
| glucose-ferment | yes | 80.629 | no |
| thermophile | no | 97.107 | no |
| glucose-util | yes | 89.378 | no |
External links
@ref: 16107
culture collection no.: DSM 22020, ATCC 51347, CIP 105678, NCTC 11732
straininfo link
- @ref: 78002
- straininfo: 42940
literature
- topic: Phylogeny
- Pubmed-ID: 8068541
- title: Mycoplasma auris sp. nov., Mycoplasma cottewii sp. nov., and Mycoplasma yeatsii sp. nov., new sterol-requiring mollicutes from the external ear canals of goats.
- authors: DaMassa AJ, Tully JG, Rose DL, Pitcher D, Leach RH, Cottew GS
- journal: Int J Syst Bacteriol
- DOI: 10.1099/00207713-44-3-479
- year: 1994
- mesh: Animals, Base Composition, DNA, Bacterial/chemistry, Ear Canal/*microbiology, Goats/*microbiology, Microscopy, Electron, Mycoplasma/*classification/isolation & purification/metabolism, Serotyping, Species Specificity, Sterols/metabolism, Terminology as Topic
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16107 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22020) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22020 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 37217 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/17724 | ||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 78002 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID42940.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
| 118768 | Curators of the CIP | Collection of Institut Pasteur (CIP 105678) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105678 |