Strain identifier
BacDive ID: 8620
Type strain:
Species: Malacoplasma penetrans
Strain Designation: GTU-54-6A1
Strain history: <- J. K. Davis, Dept. Agronomy, Purdue Univ., West Lafayette, USA <- J. G. Tully <- S.-C. Lo, Armed Forces Institute of Pathology; GTU-54-6A1
NCBI tax ID(s): 28227 (species)
General
@ref: 16441
BacDive-ID: 8620
DSM-Number: 22633
keywords: 16S sequence, Bacteria, mesophilic
description: Malacoplasma penetrans GTU-54-6A1 is a mesophilic bacterium that was isolated from urogenital tract of a male patient with AIDS.
NCBI tax id
- NCBI tax id: 28227
- Matching level: species
strain history
- @ref: 16441
- history: <- J. K. Davis, Dept. Agronomy, Purdue Univ., West Lafayette, USA <- J. G. Tully <- S.-C. Lo, Armed Forces Institute of Pathology; GTU-54-6A1
doi: 10.13145/bacdive8620.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/mycoplasmatota
- domain: Bacteria
- phylum: Mycoplasmatota
- class: Mollicutes
- order: Mycoplasmoidales
- family: Mycoplasmoidaceae
- genus: Malacoplasma
- species: Malacoplasma penetrans
- full scientific name: Malacoplasma penetrans (Lo et al. 1992) Gupta et al. 2018
synonyms
- @ref: 20215
- synonym: Mycoplasma penetrans
@ref: 16441
domain: Bacteria
phylum: Tenericutes
class: Mollicutes
order: Mycoplasmatales
family: Mycoplasmoidaceae
genus: Malacoplasma
species: Malacoplasma penetrans
full scientific name: Malacoplasma penetrans (Lo et al. 1992) Gupta et al. 2018
strain designation: GTU-54-6A1
type strain: yes
Morphology
colony morphology
- @ref: 16441
- incubation period: 1-2 days
Culture and growth conditions
culture medium
- @ref: 16441
- name: SP4-Z MEDIUM (DSMZ Medium 1076b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1076b
- composition: Name: SP4-Z MEDIUM (DSMZ Medium 1076b) Composition: Agar 10.0 g/l Tryptone 10.0 g/l Bacto peptone 5.0 g/l PPLO broth 3.5 g/l Urea 2.0 g/l Glucose 1.0 g/l None 1.0 g/l Yeast extract 0.4 g/l DNA 0.2 g/l CMRL 1066 Fetal bovine serum Swine serum Distilled water
culture temp
- @ref: 16441
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 16441
- sample type: urogenital tract of a male patient with AIDS
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Disease | |
#Infection | #Patient | |
#Host Body-Site | #Urogenital tract | |
#Host | #Human | #Male |
taxonmaps
- @ref: 69479
- File name: preview.99_2508.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_329;96_1352;97_1605;98_1951;99_2508&stattab=map
- Last taxonomy: Mycoplasma penetrans subclade
- 16S sequence: L10839
- Sequence Identity:
- Total samples: 988
- soil counts: 4
- aquatic counts: 31
- animal counts: 951
- plant counts: 2
Safety information
risk assessment
- @ref: 16441
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Mycoplasma penetrans gene for 16S rRNA, partial sequence | AB069817 | 252 | ena | 28227 |
16441 | Mycoplasma penetrans strain GTU-54-6A1 16S ribosomal RNA gene, partial sequence | L10839 | 1452 | ena | 28227 |
GC content
- @ref: 16441
- GC-content: 30.5
External links
@ref: 16441
culture collection no.: DSM 22633, ATCC 55252, GTU 54
straininfo link
- @ref: 78001
- straininfo: 43557
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 1503969 | Mycoplasma penetrans sp. nov., from the urogenital tract of patients with AIDS. | Lo SC, Hayes MM, Tully JG, Wang RY, Kotani H, Pierce PF, Rose DL, Shih JW | Int J Syst Bacteriol | 10.1099/00207713-42-3-357 | 1992 | Acquired Immunodeficiency Syndrome/complications/*microbiology, Animals, Bacterial Adhesion, Bacteriuria/complications/*microbiology, Base Composition, Cell Line, Cholesterol/pharmacology, DNA, Bacterial/chemistry, Humans, Immunoblotting, Male, Microscopy, Electron, Mycoplasma/*classification/isolation & purification/physiology/ultrastructure, Tumor Cells, Cultured | Pathogenicity |
Enzymology | 9611799 | Identification of two glycosylated components of Mycoplasma penetrans: a surface-exposed capsular polysaccharide and a glycolipid fraction. | Neyrolles O, Brenner C, Prevost MC, Fontaine T, Montagnier L, Blanchard A | Microbiology (Reading) | 10.1099/00221287-144-5-1247 | 1998 | Bacterial Capsules/*analysis/chemistry/ultrastructure, Coloring Agents, Electrophoresis, Polyacrylamide Gel, Endopeptidase K/metabolism, Ferritins, Glycoconjugates/analysis, Glycolipids/*analysis, Humans, Microscopy, Electron, Mycoplasma penetrans/*chemistry/enzymology/growth & development/*ultrastructure, Periodic Acid-Schiff Reaction, Ruthenium Red | Pathogenicity |
22447904 | Conserved terminal organelle morphology and function in Mycoplasma penetrans and Mycoplasma iowae. | Jurkovic DA, Newman JT, Balish MF | J Bacteriol | 10.1128/JB.00060-12 | 2012 | Microscopy, Electron, Scanning, Mycoplasma iowae/cytology/growth & development/*physiology/ultrastructure, Mycoplasma penetrans/cytology/growth & development/*physiology/ultrastructure, Organelles/*physiology/ultrastructure, Time-Lapse Imaging |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
16441 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22633) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22633 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
78001 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID43557.1 | StrainInfo: A central database for resolving microbial strain identifiers |