Strain identifier
BacDive ID: 8619
Type strain: 
Species: Mycoplasmopsis synoviae
Strain history: <- J. K. Davis; WVU 1853 {2007} <- ATCC <- R. G. Wittler <- N. O. Olson
NCBI tax ID(s): 2109 (species)
version 8.1 (current version)
General
@ref: 15701
BacDive-ID: 8619
DSM-Number: 21430
keywords: genome sequence, 16S sequence, Bacteria, animal pathogen
description: Mycoplasmopsis synoviae DSM 21430 is an animal pathogen that was isolated from hock joint of chicken.
NCBI tax id
- NCBI tax id: 2109
- Matching level: species
strain history
- @ref: 15701
- history: <- J. K. Davis; WVU 1853 {2007} <- ATCC <- R. G. Wittler <- N. O. Olson
doi: 10.13145/bacdive8619.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/mycoplasmatota
- domain: Bacteria
- phylum: Mycoplasmatota
- class: Mollicutes
- order: Mycoplasmoidales
- family: Metamycoplasmataceae
- genus: Mycoplasmopsis
- species: Mycoplasmopsis synoviae
- full scientific name: Mycoplasmopsis synoviae (Olson et al. 1964) Gupta et al. 2018
synonyms
- @ref: 20215
- synonym: Mycoplasma synoviae
@ref: 15701
domain: Bacteria
phylum: Tenericutes
class: Mollicutes
order: Mycoplasmatales
family: Mycoplasmataceae
genus: Mycoplasma
species: Mycoplasma synoviae
full scientific name: Mycoplasma synoviae Olson et al. 1964
type strain: yes
Morphology
colony morphology
- @ref: 15701
- incubation period: 3-7 days
Isolation, sampling and environmental information
isolation
- @ref: 15701
- sample type: hock joint of chicken
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Birds | #Chicken |
| #Host Body-Site | #Limb | #Joint |
Safety information
risk assessment
- @ref: 15701
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Mycoplasma synoviae ATCC 25204 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence
- accession: AY768810
- length: 943
- database: ena
- NCBI tax ID: 2109
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycoplasmopsis synoviae NCTC10124 | GCA_900475235 | complete | ncbi | 2109 |
| 66792 | Mycoplasmopsis synoviae ATCC 25204 WVU1853T | GCA_000969765 | complete | ncbi | 1267001 |
| 66792 | Mycoplasmopsis synoviae ATCC 25204 WVU 1853 | GCA_000385095 | contig | ncbi | 1267001 |
| 66792 | Mycoplasma synoviae ATCC 25204 | 1267001.4 | wgs | patric | 1267001 |
| 66792 | Mycoplasma synoviae ATCC 25204 strain WVU1853T | 1267001.5 | complete | patric | 1267001 |
| 66792 | Mycoplasma synoviae strain NCTC10124 | 2109.71 | complete | patric | 2109 |
| 66792 | Mycoplasma synoviae ATCC 25204 | 2627853883 | complete | img | 1267001 |
| 66792 | Mycoplasma synoviae ATCC 25204 | 2519899698 | draft | img | 1267001 |
GC content
- @ref: 15701
- GC-content: 34
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 97.345 | no |
| gram-positive | yes | 54.995 | no |
| anaerobic | no | 93.814 | no |
| aerobic | no | 96.408 | no |
| halophile | no | 51.963 | no |
| spore-forming | no | 98.373 | no |
| thermophile | no | 96.332 | no |
| glucose-util | yes | 88.703 | no |
| motile | no | 93.908 | no |
| glucose-ferment | yes | 79.848 | no |
External links
@ref: 15701
culture collection no.: DSM 21430, ATCC 25204, CIP 104970, NCTC 10124, WVU 1853
straininfo link
- @ref: 78000
- straininfo: 38413
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 15701 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21430) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21430 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 78000 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID38413.1 | StrainInfo: A central database for resolving microbial strain identifiers |